RNA–Protein interactions for RNA: ENST00000371621.4

PTPN1-201, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN1, Length 4,008 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-201ENST00000371621 IWS1Q96ST2 819 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 SAYSD1Q9NPB0 183 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 CYP39A1Q9NYL5 469 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 GGA2Q9UJY4 613 aa12.6□□□□□ -0.39
PTPN1-201ENST00000371621 PPIP5K2O43314 1243 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 GMNNO75496 209 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 ACTN1P12814 892 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 NOP14P78316 857 aaKnown RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 ATP1A4Q13733 1029 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 CNGA3Q16281 694 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 C10orf76Q5T2E6 689 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 LRRC74BQ6ZQY2 392 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 NUDCD3Q8IVD9 361 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 IFNL2Q8IZJ0 200 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 ERP44Q9BS26 406 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 RNF26Q9BY78 433 aaPredicted RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 TYW1Q9NV66 732 aaKnown RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 HDAC9Q9UKV0 1011 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 ZMYND8Q9ULU4 1186 aaPredicted RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 RTN2O75298 545 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 VIL1P09327 827 aaKnown RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 EEF1B2P24534 225 aaKnown RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 GNA11P29992 359 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 PIK3CAP42336 1068 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 DSG1Q02413 1049 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 ZNF746Q6NUN9 644 aaPredicted RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 TMC3Q7Z5M5 1100 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 JAMLQ86YT9 394 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 UBE2OQ9C0C9 1292 aaKnown RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 MYLK2Q9H1R3 596 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 MRGBPQ9NV56 204 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 ANKIB1Q9P2G1 1089 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 PHTF1Q9UMS5 762 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 BCS1LQ9Y276 419 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 CCDC195A0A1B0GUA6 201 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 FOXO6A8MYZ6 492 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 ZWINTO95229 277 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 OR52Z1P0C646 297 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 PPIDQ08752 370 aaKnown RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 TBL3Q12788 808 aaKnown RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 SLC18A3Q16572 532 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 ZC3H12AQ5D1E8 599 aaKnown RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 KLC3Q6P597 504 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 EBF2Q9HAK2 575 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 ARHGEF38Q9NXL2 777 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 PNPLA6Q8IY17 1366 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 A0A087X0B3 334 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 SEC24DO94855 1032 aaPredicted RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 DCUN1D5Q9BTE7 237 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 TRAIPQ9BWF2 469 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 GDF3Q9NR23 364 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 NMRK1Q9NWW6 199 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 SUCLA2Q9P2R7 463 aaPredicted RBP12.59□□□□□ -0.39
PTPN1-201ENST00000371621 APPL1Q9UKG1 709 aa12.59□□□□□ -0.39
PTPN1-201ENST00000371621 USP17L12C9JPN9 530 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 USP17L21D6R901 530 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 PODXLO00592 558 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 FAM13AO94988 1023 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 IGKV5-2P06315 115 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 ITGA6P23229 1130 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 EIF2B2P49770 351 aaKnown RBP12.58□□□□□ -0.4
PTPN1-201ENST00000371621 CCR3P51677 355 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 ANO7Q6IWH7 933 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 PPP1R2P3Q6NXS1 205 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 MTHFD1LQ6UB35 978 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 LARP4BQ92615 738 aaKnown RBP12.58□□□□□ -0.4
PTPN1-201ENST00000371621 GRAMD1AQ96CP6 724 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 KIAA1683Q9H0B3 1180 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 R3HDM2Q9Y2K5 976 aaKnown RBP12.58□□□□□ -0.4
PTPN1-201ENST00000371621 ZBED4O75132 1171 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 CLPTM1O96005 669 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 GNAQP50148 359 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 DDB1Q16531 1140 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 GPBP1Q86WP2 473 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 CCDC125Q86Z20 511 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 CNBD2Q96M20 576 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 LY9Q9HBG7 655 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 HEY2Q9UBP5 337 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 DIP2CQ9Y2E4 1556 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 LOC100653049A0A140TA62 436 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 RBM47A0AV96 593 aaKnown RBP12.58□□□□□ -0.4
PTPN1-201ENST00000371621 SNAP23O00161 211 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 KRT34O76011 436 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 PRLRP16471 622 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 PSMD7P51665 324 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 ALDH18A1P54886 795 aaKnown RBP12.58□□□□□ -0.4
PTPN1-201ENST00000371621 EIF6P56537 245 aaKnown RBP12.58□□□□□ -0.4
PTPN1-201ENST00000371621 PRAMEP78395 509 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 TMPRSS15P98073 1019 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 PICALMQ13492 652 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 CHRNA2Q15822 529 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 ANO4Q32M45 955 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 NXNQ6DKJ4 435 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 NLRP9Q7RTR0 991 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 PTF1AQ7RTS3 328 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 TRIM11Q96F44 468 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 OLFML3Q9NRN5 406 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 IVNS1ABPQ9Y6Y0 642 aa12.58□□□□□ -0.4
PTPN1-201ENST00000371621 XDHP47989 1333 aa12.57□□□□□ -0.4
PTPN1-201ENST00000371621 NDC80O14777 642 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms