RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 FOXR2Q6PJQ5 311 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 GALNT13Q8IUC8 556 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 KLHL23Q8NBE8 558 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 NSUN6Q8TEA1 469 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 NUP133Q8WUM0 1156 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 ZNF296Q8WUU4 475 aaPredicted RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 TTC17Q96AE7 1141 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 UBXN10Q96LJ8 280 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 TRIM39Q9HCM9 518 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 WASH6PQ9NQA3 447 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 SEC31BQ9NQW1 1179 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 AASDHPPTQ9NRN7 309 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 AGO2Q9UKV8 859 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 MTMR6Q9Y217 621 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 PAXBP1Q9Y5B6 917 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 PCDHGA9Q9Y5G4 932 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 PCDHGA8Q9Y5G5 932 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 PCDHGA7Q9Y5G6 932 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 PCDHGA6Q9Y5G7 932 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 PCDHGA3Q9Y5H0 932 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 PCDHGA2Q9Y5H1 932 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 CASP8AP2Q9UKL3 1982 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 hCG_1642624A0A1W2PR95 340 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 ERICH4A6NGS2 130 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 LARGE1O95461 756 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 EIF4A3P38919 411 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 RPS8P62241 208 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 GTF2IP78347 998 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 GBE1Q04446 702 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 ORC2Q13416 577 aaPredicted RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 ACAP1Q15027 740 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 ZNF423Q2M1K9 1284 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 DHX32Q7L7V1 743 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 EPHX4Q8IUS5 362 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 RNF168Q8IYW5 571 aaPredicted RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 ZSWIM2Q8NEG5 633 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 EPS8L3Q8TE67 593 aaKnown RBP4.36□□□□□ -1.71
MCF2-203ENST00000370576 PLD4Q96BZ4 506 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 MYO19Q96H55 970 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 CNDP1Q96KN2 507 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 MBOAT7Q96N66 472 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 ADPGKQ9BRR6 497 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 TTPALQ9BTX7 342 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 COA1Q9GZY4 146 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 FBRSQ9HAH7 460 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 CD93Q9NPY3 652 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 KCND1Q9NSA2 647 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 MARK1Q9P0L2 795 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 FAM8A1Q9UBU6 413 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 TSKSQ9UJT2 592 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 POLIQ9UNA4 740 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 ANK1P16157 1881 aa4.36□□□□□ -1.71
MCF2-203ENST00000370576 CYP2D7A0A087X1C5 515 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 URI1O94763 535 aaPredicted RBP4.35□□□□□ -1.71
MCF2-203ENST00000370576 PDGFAP04085 211 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 MTHFRP42898 656 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 C21orf58P58505 322 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 ME3Q16798 604 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 KRBOX4Q5JUW0 171 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 RCSD1Q6JBY9 416 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 TPTE2Q6XPS3 522 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 ENOSF1Q7L5Y1 443 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 NSUN7Q8NE18 718 aaKnown RBP4.35□□□□□ -1.71
MCF2-203ENST00000370576 TBC1D16Q8TBP0 767 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 PAIP2Q9BPZ3 127 aaKnown RBP4.35□□□□□ -1.71
MCF2-203ENST00000370576 DHRS4Q9BTZ2 278 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 RNF39Q9H2S5 420 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 SUDS3Q9H7L9 328 aaPredicted RBP4.35□□□□□ -1.71
MCF2-203ENST00000370576 RMI1Q9H9A7 625 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 IL1RAPL2Q9NP60 686 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 NSMCE4AQ9NXX6 385 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 DKK3Q9UBP4 350 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 PCOLCE2Q9UKZ9 415 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 NIP7Q9Y221 180 aaKnown RBP eCLIP4.35□□□□□ -1.71
MCF2-203ENST00000370576 TMEM229AB2RXF0 380 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 IRAK2O43187 625 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 DKC1O60832 514 aaKnown RBP eCLIP4.35□□□□□ -1.71
MCF2-203ENST00000370576 LGR5O75473 907 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 MBD4O95243 580 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 CPP00450 1065 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 CNGA1P29973 690 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 TUBP50607 506 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 STARD6P59095 220 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 NUCB2P80303 420 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 BECN1Q14457 450 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 PPP4R3BQ5MIZ7 849 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 SAMD7Q7Z3H4 446 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 LRRTM3Q86VH5 581 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 SPATA2LQ8IUW3 424 aaPredicted RBP4.35□□□□□ -1.71
MCF2-203ENST00000370576 TBC1D10CQ8IV04 446 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 SULF1Q8IWU6 871 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 KRT78Q8N1N4 520 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 PCYOX1LQ8NBM8 494 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 SPATA20Q8TB22 786 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 PARD3BQ8TEW8 1205 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 RBM17Q96I25 401 aaKnown RBP4.35□□□□□ -1.71
MCF2-203ENST00000370576 ZDHHC15Q96MV8 337 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 CRACR2AQ9BSW2 395 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 FANCFQ9NPI8 374 aa4.35□□□□□ -1.71
MCF2-203ENST00000370576 AIPL1Q9NZN9 384 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms