RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 LENG1Q96BZ8 264 aaPredicted RBP20.53■□□□□ 0.88
CLN3-204ENST00000357857 KIFC3Q9BVG8 833 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 IKZF4Q9H2S9 585 aa20.53■□□□□ 0.88
CLN3-204ENST00000357857 LGALS16A8MUM7 142 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 H0YCG3 227 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 H3BRB1 525 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 CLIC2O15247 247 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 AKR1A1P14550 325 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 GLRA2P23416 452 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 PTPN21Q16825 1174 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 IER5Q5VY09 327 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 TRPV1Q8NER1 839 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 CD99L2Q8TCZ2 262 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 TCP11Q8WWU5 503 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 NOC4LQ9BVI4 516 aaKnown RBP20.52■□□□□ 0.88
CLN3-204ENST00000357857 AP5M1Q9H0R1 490 aa20.52■□□□□ 0.88
CLN3-204ENST00000357857 TUT1Q9H6E5 874 aaKnown RBP20.52■□□□□ 0.88
CLN3-204ENST00000357857 COL1A2P08123 1366 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 IGKV6-21A0A0C4DH24 114 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 DENND3A2RUS2 1198 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 CYBAP13498 195 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 INSRRP14616 1297 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 HOXD10P28358 340 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 ABCD1P33897 745 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 NAMPTP43490 491 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 TRAPPC12Q8WVT3 735 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 AGPAT3Q9NRZ7 376 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 TBX20Q9UMR3 447 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 EXOC7Q9UPT5 735 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 ADGRA3Q8IWK6 1321 aa20.51■□□□□ 0.87
CLN3-204ENST00000357857 GPR25O00155 361 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 PES1O00541 588 aaKnown RBP20.5■□□□□ 0.87
CLN3-204ENST00000357857 PBX1P40424 430 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 MARSP56192 900 aaKnown RBP20.5■□□□□ 0.87
CLN3-204ENST00000357857 UBXN1Q04323 297 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 MAN2A1Q16706 1144 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 SPECC1LQ69YQ0 1117 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 SUGCTQ9HAC7 445 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 CGNQ9P2M7 1197 aaKnown RBP20.5■□□□□ 0.87
CLN3-204ENST00000357857 ARHGAP28Q9P2N2 729 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 SRRDQ9UH36 339 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 CPT1AP50416 773 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 BRDTQ58F21 947 aaPredicted RBP20.5■□□□□ 0.87
CLN3-204ENST00000357857 MIIPQ5JXC2 388 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 MAP4K3Q8IVH8 894 aa20.5■□□□□ 0.87
CLN3-204ENST00000357857 LRRIQ4A6NIV6 560 aa20.49■□□□□ 0.87
CLN3-204ENST00000357857 SLC16A3O15427 465 aaKnown RBP20.49■□□□□ 0.87
CLN3-204ENST00000357857 SCP2P22307 547 aa20.49■□□□□ 0.87
CLN3-204ENST00000357857 DNM2P50570 870 aa20.49■□□□□ 0.87
CLN3-204ENST00000357857 GSDMDP57764 484 aa20.49■□□□□ 0.87
CLN3-204ENST00000357857 SNRPFP62306 86 aaKnown RBP20.49■□□□□ 0.87
CLN3-204ENST00000357857 IGBP1P78318 339 aa20.49■□□□□ 0.87
CLN3-204ENST00000357857 DRP2Q13474 957 aa20.49■□□□□ 0.87
CLN3-204ENST00000357857 VWA3BQ502W6 1294 aa20.49■□□□□ 0.87
CLN3-204ENST00000357857 LRRC71Q8N4P6 559 aa20.49■□□□□ 0.87
CLN3-204ENST00000357857 DEPTORQ8TB45 409 aa20.49■□□□□ 0.87
CLN3-204ENST00000357857 PSPC1Q8WXF1 523 aaKnown RBP20.49■□□□□ 0.87
CLN3-204ENST00000357857 KCNN1Q92952 543 aa20.49■□□□□ 0.87
CLN3-204ENST00000357857 DUSP11O75319 330 aaKnown RBP20.48■□□□□ 0.87
CLN3-204ENST00000357857 C22orf31O95567 290 aa20.48■□□□□ 0.87
CLN3-204ENST00000357857 EPB41P11171 864 aaKnown RBP20.48■□□□□ 0.87
CLN3-204ENST00000357857 MKRN4PQ13434 485 aaPredicted RBP20.48■□□□□ 0.87
CLN3-204ENST00000357857 MYBPC2Q14324 1141 aa20.48■□□□□ 0.87
CLN3-204ENST00000357857 CEP135Q66GS9 1140 aa20.48■□□□□ 0.87
CLN3-204ENST00000357857 FRMD5Q7Z6J6 570 aa20.48■□□□□ 0.87
CLN3-204ENST00000357857 SLC9A9Q8IVB4 645 aa20.48■□□□□ 0.87
CLN3-204ENST00000357857 PRPF31Q8WWY3 499 aaKnown RBP20.48■□□□□ 0.87
CLN3-204ENST00000357857 DMAC2Q9NW81 257 aa20.48■□□□□ 0.87
CLN3-204ENST00000357857 ITIH6Q6UXX5 1313 aa20.48■□□□□ 0.87
CLN3-204ENST00000357857 MAGEB2O15479 319 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 AKAP3O75969 853 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 F2P00734 622 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 PPFIA1Q13136 1202 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 CAPSQ13938 189 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 MXD4Q14582 209 aaPredicted RBP20.47■□□□□ 0.87
CLN3-204ENST00000357857 EFCAB12Q6NXP0 572 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 TRIM59Q8IWR1 403 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 C12orf56Q8IXR9 622 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 RETREG2Q8NC44 543 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 ERO1AQ96HE7 468 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 SAGE1Q9NXZ1 904 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 SUCLA2Q9P2R7 463 aaPredicted RBP20.47■□□□□ 0.87
CLN3-204ENST00000357857 GNRH1P01148 92 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 CASP4P49662 377 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 CYP2J2P51589 502 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 IRX5P78411 483 aaPredicted RBP20.47■□□□□ 0.87
CLN3-204ENST00000357857 CACNB2Q08289 660 aaPredicted RBP20.47■□□□□ 0.87
CLN3-204ENST00000357857 TRIM32Q13049 653 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 TBX2Q13207 712 aaPredicted RBP20.47■□□□□ 0.87
CLN3-204ENST00000357857 FSCN1Q16658 493 aaKnown RBP20.47■□□□□ 0.87
CLN3-204ENST00000357857 FKBP15Q5T1M5 1219 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 TAS1R3Q7RTX0 852 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 METTL13Q8N6R0 699 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 TMEM174Q8WUU8 243 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 ZNF830Q96NB3 372 aaPredicted RBP20.47■□□□□ 0.87
CLN3-204ENST00000357857 MKNK1Q9BUB5 465 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 NDST4Q9H3R1 872 aa20.47■□□□□ 0.87
CLN3-204ENST00000357857 METTL14Q9HCE5 456 aaKnown RBP20.47■□□□□ 0.87
CLN3-204ENST00000357857 ARMCX3Q9UH62 379 aaPredicted RBP20.47■□□□□ 0.87
CLN3-204ENST00000357857 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms