RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 FBF1Q8TES7 1133 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 TIPINQ9BVW5 301 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 RAB17Q9H0T7 212 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 CARD9Q9H257 536 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 VCX3BQ9H321 246 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 ZNF287Q9HBT7 754 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 VAT1LQ9HCJ6 419 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 PCDH18Q9HCL0 1135 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 VCX3AQ9NNX9 186 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 TAB2Q9NYJ8 693 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 TBC1D7Q9P0N9 293 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 HSFX1Q9UBD0 423 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 HYOU1Q9Y4L1 999 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 PCNTO95613 3336 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 FAM196BA6NMK8 535 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 KLRF2D3W0D1 207 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 TCP1P17987 556 aaKnown RBP12.81□□□□□ -0.36
RTN3-203ENST00000341307 ECHS1P30084 290 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 SERPINB4P48594 390 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 CYP27A1Q02318 531 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 TCP10Q12799 353 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 SMYD4Q8IYR2 804 aaPredicted RBP12.81□□□□□ -0.36
RTN3-203ENST00000341307 LRRC47Q8N1G4 583 aaKnown RBP12.81□□□□□ -0.36
RTN3-203ENST00000341307 MS4A14Q96JA4 679 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 PBKQ96KB5 322 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 SCOCQ9UIL1 159 aa12.81□□□□□ -0.36
RTN3-203ENST00000341307 SRPRBQ9Y5M8 271 aaKnown RBP12.81□□□□□ -0.36
RTN3-203ENST00000341307 FRMPD2Q68DX3 1309 aaPredicted RBP12.8□□□□□ -0.36
RTN3-203ENST00000341307 A0A087X0B3 334 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 PPP1R3GB7ZBB8 358 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 ACTN4O43707 911 aaKnown RBP12.8□□□□□ -0.36
RTN3-203ENST00000341307 ECE2O60344 883 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 GBP1P32455 592 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 MCM7P33993 719 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 PRPF4BQ13523 1007 aaKnown RBP12.8□□□□□ -0.36
RTN3-203ENST00000341307 INF2Q27J81 1249 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 TTC38Q5R3I4 469 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 NCCRP1Q6ZVX7 275 aaPredicted RBP12.8□□□□□ -0.36
RTN3-203ENST00000341307 SLC15A3Q8IY34 581 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 ASAP3Q8TDY4 903 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 ATXN2LQ8WWM7 1075 aaKnown RBP12.8□□□□□ -0.36
RTN3-203ENST00000341307 DNAJC9Q8WXX5 260 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 TEKT1Q969V4 418 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 UTP4Q969X6 686 aaKnown RBP12.8□□□□□ -0.36
RTN3-203ENST00000341307 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.8□□□□□ -0.36
RTN3-203ENST00000341307 UBA5Q9GZZ9 404 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 MLXIPQ9HAP2 919 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 CTNNAL1Q9UBT7 734 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 SLC4A7Q9Y6M7 1214 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 hCG_2014768A0A024R1R8 64 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 USP17L5A8MUK1 530 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 NCK2O43639 380 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 CYP1A1P04798 512 aaPredicted RBP12.8□□□□□ -0.36
RTN3-203ENST00000341307 ALOX15P16050 662 aaPredicted RBP12.8□□□□□ -0.36
RTN3-203ENST00000341307 CTNNA1P35221 906 aaKnown RBP12.8□□□□□ -0.36
RTN3-203ENST00000341307 CRKP46108 304 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 PTGDRQ13258 359 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 MEA1Q16626 185 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 SHROOM1Q2M3G4 852 aaPredicted RBP12.8□□□□□ -0.36
RTN3-203ENST00000341307 P3H1Q32P28 736 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 C9orf131Q5VYM1 1079 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 CEP128Q6ZU80 1094 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 CCDC80Q76M96 950 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 MIGA2Q7L4E1 593 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 LZICQ8WZA0 190 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 DHRS1Q96LJ7 313 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 FAM192AQ9GZU8 254 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 TAOK3Q9H2K8 898 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 RNF181Q9P0P0 153 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 PNMA3Q9UL41 463 aa12.8□□□□□ -0.36
RTN3-203ENST00000341307 SCN9AQ15858 1988 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 FOCADQ5VW36 1801 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.79□□□□□ -0.36
RTN3-203ENST00000341307 ZNF263O14978 683 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 GRIN3BO60391 1043 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 PAFAH1B1P43034 410 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 CACNA2D1P54289 1103 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 GABPAQ06546 454 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 LSAMPQ13449 338 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 DUS1LQ6P1R4 473 aaKnown RBP12.79□□□□□ -0.36
RTN3-203ENST00000341307 PODNQ7Z5L7 613 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.79□□□□□ -0.36
RTN3-203ENST00000341307 STK32AQ8WU08 396 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 HAPLN3Q96S86 360 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 CNOT10Q9H9A5 744 aaKnown RBP12.79□□□□□ -0.36
RTN3-203ENST00000341307 SAMD15Q9P1V8 674 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 NUB1Q9Y5A7 615 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 COL4A5P29400 1685 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 MOCS3O95396 460 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 OAS1P00973 400 aaKnown RBP12.79□□□□□ -0.36
RTN3-203ENST00000341307 CHN1P15882 459 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 GM2AP17900 193 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 CASP1P29466 404 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 TMED1Q13445 227 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 ZC2HC1CQ53FD0 456 aaPredicted RBP12.79□□□□□ -0.36
RTN3-203ENST00000341307 OLFML1Q6UWY5 402 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 SEPT14Q6ZU15 432 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 BLIDQ8IZY5 108 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 TLCD1Q96CP7 247 aa12.79□□□□□ -0.36
RTN3-203ENST00000341307 INIPQ9NRY2 104 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms