RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CPSF3Q9UKF6 684 aaKnown RBP10.97□□□□□ -0.65
USP54-201ENST00000339859 DUOX1Q9NRD9 1551 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 GRIK5Q16478 980 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 NIPA1Q7RTP0 329 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 YAF2Q8IY57 180 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 MSH4O15457 936 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 ITKQ08881 620 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 TMEM62Q0P6H9 643 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 PRPSAP1Q14558 356 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 GPR142Q7Z601 462 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 HTATIP2Q9BUP3 242 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 TUBE1Q9UJT0 475 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 DUOXA2Q1HG44 320 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 RSAD2Q8WXG1 361 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 KCNB2Q92953 911 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 C17orf75Q9HAS0 396 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 IL17RBQ9NRM6 502 aa10.97□□□□□ -0.65
USP54-201ENST00000339859 UNCXA6NJT0 531 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 COBLO75128 1261 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 H2AFZP0C0S5 128 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 ATF7IP2Q5U623 682 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 SPRYD7Q5W111 196 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 CYP4F22Q6NT55 531 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 H2AFVQ71UI9 128 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 DAAM2Q86T65 1068 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 SCN4BQ8IWT1 228 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 RPUSD2Q8IZ73 545 aaKnown RBP10.96□□□□□ -0.65
USP54-201ENST00000339859 NCAPGQ9BPX3 1015 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 NMRK2Q9NPI5 230 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 UTP11Q9Y3A2 253 aaKnown RBP10.96□□□□□ -0.65
USP54-201ENST00000339859 TTLL3Q9Y4R7 772 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 IGSF9BQ9UPX0 1349 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 USP2O75604 605 aaPredicted RBP10.96□□□□□ -0.65
USP54-201ENST00000339859 XPAP23025 273 aaPredicted RBP10.96□□□□□ -0.65
USP54-201ENST00000339859 ATN1P54259 1190 aaPredicted RBP10.96□□□□□ -0.65
USP54-201ENST00000339859 SARNPP82979 210 aaKnown RBP10.96□□□□□ -0.65
USP54-201ENST00000339859 DNAJC24Q6P3W2 148 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 C1orf228Q6PIY5 440 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 HPS5Q9UPZ3 1129 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 STK25O00506 426 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 PRMT2P55345 433 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 MFSD10Q14728 455 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 TADA2BQ86TJ2 420 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 PDCL2Q8N4E4 241 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 GRK7Q8WTQ7 553 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 PDCD2LQ9BRP1 358 aa10.96□□□□□ -0.65
USP54-201ENST00000339859 FBXO2Q9UK22 296 aaPredicted RBP10.96□□□□□ -0.65
USP54-201ENST00000339859 PP2D1A8MPX8 630 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 RPA1P27694 616 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 HS1BP3Q53T59 392 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 PLA2G4FQ68DD2 849 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 NME8Q8N427 588 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 GSDMBQ8TAX9 411 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 GPT2Q8TD30 523 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 EHD2Q9NZN4 543 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 PCDHAC2Q9Y5I4 1007 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 SCN11AQ9UI33 1791 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 SALL3Q9BXA9 1300 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 EIF3CLB5ME19 914 aaKnown RBP10.96□□□□□ -0.66
USP54-201ENST00000339859 SLC16A3O15427 465 aaKnown RBP10.96□□□□□ -0.66
USP54-201ENST00000339859 ACTN4O43707 911 aaKnown RBP10.96□□□□□ -0.66
USP54-201ENST00000339859 ARL1P40616 181 aaPredicted RBP10.96□□□□□ -0.66
USP54-201ENST00000339859 APLP1P51693 650 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 TMEM132DQ14C87 1099 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 FSCN1Q16658 493 aaKnown RBP10.96□□□□□ -0.66
USP54-201ENST00000339859 MOB2Q70IA6 237 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 GPIHBP1Q8IV16 184 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 EIF3CQ99613 913 aaKnown RBP10.96□□□□□ -0.66
USP54-201ENST00000339859 COLEC11Q9BWP8 271 aa10.96□□□□□ -0.66
USP54-201ENST00000339859 CWC15Q9P013 229 aaKnown RBP10.96□□□□□ -0.66
USP54-201ENST00000339859 COL22A1Q8NFW1 1626 aaPredicted RBP10.96□□□□□ -0.66
USP54-201ENST00000339859 TCP11X2Q5H9J9 407 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 C10orf76Q5T2E6 689 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 AFG1LQ8WV93 481 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 FAM217BQ9NTX9 383 aaPredicted RBP10.95□□□□□ -0.66
USP54-201ENST00000339859 FEZ2Q9UHY8 353 aaPredicted RBP10.95□□□□□ -0.66
USP54-201ENST00000339859 SOCS7O14512 581 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 XRCC6P12956 609 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP54-201ENST00000339859 NOLC1Q14978 699 aaKnown RBP eCLIP10.95□□□□□ -0.66
USP54-201ENST00000339859 SV2CQ496J9 727 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 SLC30A10Q6XR72 485 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 DONSONQ9NYP3 566 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 LRRN2O75325 713 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 RBP5P82980 135 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 ENOSF1Q7L5Y1 443 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 SPATA2LQ8IUW3 424 aaPredicted RBP10.95□□□□□ -0.66
USP54-201ENST00000339859 LRRC71Q8N4P6 559 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 TNIP3Q96KP6 325 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 NDST4Q9H3R1 872 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 A0A087WWV3 80 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 SNX17Q15036 470 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 APPL2Q8NEU8 664 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 ZNF653Q96CK0 615 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 TINF2Q9BSI4 451 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 TSPYL2Q9H2G4 693 aaPredicted RBP10.95□□□□□ -0.66
USP54-201ENST00000339859 MROH7Q68CQ1 1323 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 AMHP03971 560 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 KRT39Q6A163 491 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 DAAM1Q9Y4D1 1078 aa10.95□□□□□ -0.66
USP54-201ENST00000339859 KLRG2A4D1S0 409 aaPredicted RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms