RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 PANK4Q9NVE7 773 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 CDY2AQ9Y6F7 541 aa24.52■■□□□ 1.52
SDC3-202ENST00000339394 EVI5O60447 810 aa24.51■■□□□ 1.51
SDC3-202ENST00000339394 PEX3P56589 373 aa24.51■■□□□ 1.51
SDC3-202ENST00000339394 MGAT3Q09327 533 aa24.51■■□□□ 1.51
SDC3-202ENST00000339394 DMP1Q13316 513 aaPredicted RBP24.51■■□□□ 1.51
SDC3-202ENST00000339394 TRAF7Q6Q0C0 670 aa24.51■■□□□ 1.51
SDC3-202ENST00000339394 C7orf61Q8IZ16 206 aa24.51■■□□□ 1.51
SDC3-202ENST00000339394 DPF3Q92784 378 aa24.51■■□□□ 1.51
SDC3-202ENST00000339394 ERCC4Q92889 916 aaPredicted RBP24.51■■□□□ 1.51
SDC3-202ENST00000339394 CELF4Q9BZC1 486 aaKnown RBP24.51■■□□□ 1.51
SDC3-202ENST00000339394 PPP1R12CQ9BZL4 782 aa24.51■■□□□ 1.51
SDC3-202ENST00000339394 A0A087WZ62 844 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 M0QZ92 97 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 KIAA0355O15063 1070 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 SELPP16109 830 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 NAMPTP43490 491 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 NPTX2P47972 431 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 PPP2R5AQ15172 486 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 FAM26DQ5JW98 314 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 ODR4Q5SWX8 454 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 UNC13DQ70J99 1090 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 CCDC65Q8IXS2 484 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 OSMRQ99650 979 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 FDXACB1Q9BRP7 624 aaPredicted RBP24.5■■□□□ 1.51
SDC3-202ENST00000339394 NTPCRQ9BSD7 190 aaKnown RBP24.5■■□□□ 1.51
SDC3-202ENST00000339394 IFT122Q9HBG6 1241 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 TRPV2Q9Y5S1 764 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 LOXHD1Q8IVV2 1947 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 PVALEFA0A1B0GWK0 134 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 KLRC4O43908 158 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 CYP2C18P33260 490 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 POU5F1BQ06416 359 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 TFDP1Q14186 410 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 HERC4Q5GLZ8 1057 aaPredicted RBP24.5■■□□□ 1.51
SDC3-202ENST00000339394 ZNF410Q86VK4 478 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 SCLT1Q96NL6 688 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 KIFC3Q9BVG8 833 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 CLSTN2Q9H4D0 955 aa24.5■■□□□ 1.51
SDC3-202ENST00000339394 LRRIQ4A6NIV6 560 aa24.49■■□□□ 1.51
SDC3-202ENST00000339394 CCDC169A6NNP5 214 aa24.49■■□□□ 1.51
SDC3-202ENST00000339394 IQCF3P0C7M6 154 aa24.49■■□□□ 1.51
SDC3-202ENST00000339394 ITGB8P26012 769 aa24.49■■□□□ 1.51
SDC3-202ENST00000339394 CRYBB1P53674 252 aaPredicted RBP24.49■■□□□ 1.51
SDC3-202ENST00000339394 LRRC8DQ7L1W4 858 aa24.49■■□□□ 1.51
SDC3-202ENST00000339394 SFR1Q86XK3 245 aa24.49■■□□□ 1.51
SDC3-202ENST00000339394 SPIRE2Q8WWL2 714 aa24.49■■□□□ 1.51
SDC3-202ENST00000339394 NUP62CLQ9H1M0 184 aa24.49■■□□□ 1.51
SDC3-202ENST00000339394 TRAK2O60296 914 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 TIMP1P01033 207 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 RPN1P04843 607 aaKnown RBP24.48■■□□□ 1.51
SDC3-202ENST00000339394 GAP43P17677 238 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 SMTNP53814 917 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 CCL23P55773 120 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 PTENP60484 403 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 COASYQ13057 564 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 TMEM40Q8WWA1 233 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 FIZ1Q96SL8 496 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 NFKBIZQ9BYH8 718 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 WNT8AQ9H1J5 351 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 KMT5AQ9NQR1 393 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 SEL1LQ9UBV2 794 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 PRKAG2Q9UGJ0 569 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 KCNG1Q9UIX4 513 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 PCDHA5Q9Y5H7 936 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 ADGRA3Q8IWK6 1321 aa24.48■■□□□ 1.51
SDC3-202ENST00000339394 RBAK-RBAKDNI3L0D1 243 aa24.47■■□□□ 1.51
SDC3-202ENST00000339394 CSDE1O75534 798 aaKnown RBP24.47■■□□□ 1.51
SDC3-202ENST00000339394 RAG1P15918 1043 aa24.47■■□□□ 1.51
SDC3-202ENST00000339394 EIF4BP23588 611 aaKnown RBP24.47■■□□□ 1.51
SDC3-202ENST00000339394 EHHADHQ08426 723 aa24.47■■□□□ 1.51
SDC3-202ENST00000339394 KLHL40Q2TBA0 621 aa24.47■■□□□ 1.51
SDC3-202ENST00000339394 KMT5BQ4FZB7 885 aa24.47■■□□□ 1.51
SDC3-202ENST00000339394 FAM178BQ8IXR5 827 aa24.47■■□□□ 1.51
SDC3-202ENST00000339394 SPATA20Q8TB22 786 aa24.47■■□□□ 1.51
SDC3-202ENST00000339394 DEPTORQ8TB45 409 aa24.47■■□□□ 1.51
SDC3-202ENST00000339394 HPS3Q969F9 1004 aa24.47■■□□□ 1.51
SDC3-202ENST00000339394 GCOM2Q9BZD3 368 aaPredicted RBP24.47■■□□□ 1.51
SDC3-202ENST00000339394 PCDH10Q9P2E7 1040 aa24.47■■□□□ 1.51
SDC3-202ENST00000339394 CAPN15O75808 1086 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 DARSP14868 501 aaKnown RBP24.46■■□□□ 1.51
SDC3-202ENST00000339394 PHKA2P46019 1235 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 MBTPS1Q14703 1052 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 CDCA2Q69YH5 1023 aaPredicted RBP24.46■■□□□ 1.51
SDC3-202ENST00000339394 SCLYQ96I15 445 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 OSBPL7Q9BZF2 842 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 MINDY3Q9H8M7 445 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 OLFML3Q9NRN5 406 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 TBC1D7Q9P0N9 293 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 EVPLQ92817 2033 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 SLC16A4O15374 487 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 SMC2O95347 1197 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 NCKAP1LP55160 1127 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 GPNMBQ14956 572 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 FBXO47Q5MNV8 452 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 IFNLR1Q8IU57 520 aaPredicted RBP24.46■■□□□ 1.51
SDC3-202ENST00000339394 TMEM161BQ8NDZ6 487 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 SMARCE1Q969G3 411 aa24.46■■□□□ 1.51
SDC3-202ENST00000339394 MRPL44Q9H9J2 332 aaKnown RBP24.46■■□□□ 1.51
SDC3-202ENST00000339394 ARHGAP28Q9P2N2 729 aa24.46■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms