RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PNMA8AQ86V59 439 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-201ENST00000326004 ZNF761Q86XN6 746 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-201ENST00000326004 LYSMD2Q8IV50 215 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 GLB1L2Q8IW92 636 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 TP53I13Q8NBR0 393 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-201ENST00000326004 PPP1R14CQ8TAE6 165 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 JDP2Q8WYK2 163 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 LPPQ93052 612 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 GFM2Q969S9 779 aaKnown RBP4.49□□□□□ -1.69
HMGB1-201ENST00000326004 QRSL1Q9H0R6 528 aaKnown RBP4.49□□□□□ -1.69
HMGB1-201ENST00000326004 ZNF277Q9NRM2 450 aaPredicted RBP4.49□□□□□ -1.69
HMGB1-201ENST00000326004 KLHL42Q9P2K6 505 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 USP18Q9UMW8 372 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 EDARQ9UNE0 448 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 GPR45Q9Y5Y3 372 aa4.49□□□□□ -1.69
HMGB1-201ENST00000326004 A0A1B0GTL3 188 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 MROH6A6NGR9 719 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 DBX1A6NMT0 343 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 FSBPO95073 299 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 SNUPNO95149 360 aaKnown RBP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 CELA3BP08861 270 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 CSF2RBP32927 897 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 RECQLP46063 649 aaPredicted RBP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 MEOX1P50221 254 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 SLURP1P55000 103 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 ANTXR2P58335 489 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 KIAA2012Q0VF49 1180 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 USP10Q14694 798 aaKnown RBP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 PCBP2Q15366 365 aaKnown RBP eCLIP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 CLUL1Q15846 466 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 ZNF827Q17R98 1081 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 ZMAT1Q5H9K5 638 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 TMEM240Q5SV17 173 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 MBNL2Q5VZF2 373 aaKnown RBP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 RALYLQ86SE5 291 aaKnown RBP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 SP8Q8IXZ3 490 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 LRRC56Q8IYG6 542 aaPredicted RBP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 RTKN2Q8IZC4 609 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 ADGRG2Q8IZP9 1017 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 NKD2Q969F2 451 aaPredicted RBP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 HOOK2Q96ED9 719 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 WDR92Q96MX6 357 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 CAMKK2Q96RR4 588 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 IFT122Q9HBG6 1241 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 TCF7L1Q9HCS4 588 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 LUC7LQ9NQ29 371 aaKnown RBP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 AASDHPPTQ9NRN7 309 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 DPP7Q9UHL4 492 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 EVLQ9UI08 416 aaPredicted RBP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 CDC42EP3Q9UKI2 254 aa4.48□□□□□ -1.69
HMGB1-201ENST00000326004 THRAP3Q9Y2W1 955 aaKnown RBP4.48□□□□□ -1.69
HMGB1-201ENST00000326004 DAPK3O43293 454 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 XPOTO43592 962 aaKnown RBP4.47□□□□□ -1.69
HMGB1-201ENST00000326004 PCDHGA12O60330 932 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 VCAM1P19320 739 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 CFPP27918 469 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 KCNC1P48547 511 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 STAT5BP51692 787 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 GJA9P57773 515 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 MEF2AQ02078 507 aaPredicted RBP4.47□□□□□ -1.69
HMGB1-201ENST00000326004 PIN1Q13526 163 aaPredicted RBP4.47□□□□□ -1.69
HMGB1-201ENST00000326004 VMACQ2NL98 169 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 GJC2Q5T442 439 aaPredicted RBP4.47□□□□□ -1.69
HMGB1-201ENST00000326004 EFCAB2Q5VUJ9 269 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 LMBR1LQ6UX01 489 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 UNC5BQ8IZJ1 945 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 TSPEARQ8WU66 669 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 FATE1Q969F0 183 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 MBD6Q96DN6 1003 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 PRDM12Q9H4Q4 367 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 SLTMQ9NWH9 1034 aaKnown RBP eCLIP4.47□□□□□ -1.69
HMGB1-201ENST00000326004 TCEAL9Q9UHQ7 104 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 DNAI1Q9UI46 699 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 INVSQ9Y283 1065 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 LUC7L2Q9Y383 392 aaKnown RBP4.47□□□□□ -1.69
HMGB1-201ENST00000326004 PCDHGA9Q9Y5G4 932 aaKnown RBP4.47□□□□□ -1.69
HMGB1-201ENST00000326004 PCDHGA8Q9Y5G5 932 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 PCDHGA7Q9Y5G6 932 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 PCDHGA6Q9Y5G7 932 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 PCDHGA3Q9Y5H0 932 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 PCDHGA2Q9Y5H1 932 aa4.47□□□□□ -1.69
HMGB1-201ENST00000326004 A0A0A6YYK5 440 aaPredicted RBP4.46□□□□□ -1.7
HMGB1-201ENST00000326004 AKAP10O43572 662 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 ABLIM3O94929 683 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 OSMP13725 252 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 MRE11P49959 708 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 RAB27AP51159 221 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 CDK17Q00537 523 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 ACAP2Q15057 778 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 PCOLCEQ15113 449 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 NFE2Q16621 373 aaPredicted RBP4.46□□□□□ -1.7
HMGB1-201ENST00000326004 ZNF568Q3ZCX4 644 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 AGBL4Q5VU57 503 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 BORAQ6PGQ7 559 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 BTNL9Q6UXG8 535 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 LARP4Q71RC2 724 aaKnown RBP eCLIP4.46□□□□□ -1.7
HMGB1-201ENST00000326004 GAREM2Q75VX8 874 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 PLEKHH3Q7Z736 793 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 C1QL4Q86Z23 238 aa4.46□□□□□ -1.7
HMGB1-201ENST00000326004 CPA6Q8N4T0 437 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms