RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 RETREG2Q8NC44 543 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 SCFD2Q8WU76 684 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 GLG1Q92896 1179 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 NUP58Q9BVL2 599 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 LGR5O75473 907 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 XRCC5P13010 732 aaKnown RBP20.18■□□□□ 0.82
USP39-201ENST00000323701 PSMC2P35998 433 aaKnown RBP20.18■□□□□ 0.82
USP39-201ENST00000323701 TERF1P54274 439 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 ZBED6P86452 979 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 TCERG1LQ5VWI1 586 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 SLC39A4Q6P5W5 647 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 SPIRE2Q8WWL2 714 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 BAP1Q92560 729 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 ZBTB10Q96DT7 871 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 NAA15Q9BXJ9 866 aaKnown RBP20.18■□□□□ 0.82
USP39-201ENST00000323701 FAM184BQ9ULE4 1060 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 LOC102724159A0A0B4J2E5 919 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 A0A1W2PQJ5 194 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 ACTN1P12814 892 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 ALCAMQ13740 583 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 PWP2Q15269 919 aaKnown RBP20.17■□□□□ 0.82
USP39-201ENST00000323701 TAF1CQ15572 869 aaPredicted RBP20.17■□□□□ 0.82
USP39-201ENST00000323701 FAM160B1Q5W0V3 765 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 ACRBPQ8NEB7 543 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 TMEM206Q9H813 350 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 ADGRG1Q9Y653 693 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 BRCA2P51587 3418 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 HTTP42858 3142 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 MANSC4A6NHS7 340 aaPredicted RBP20.17■□□□□ 0.82
USP39-201ENST00000323701 ADCY6O43306 1168 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 AFPP02771 609 aaKnown RBP20.17■□□□□ 0.82
USP39-201ENST00000323701 SLC10A3P09131 477 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 TRIM49P0CI25 452 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 TRIM49CP0CI26 452 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 SLC9A1P19634 815 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 GLRA2P23416 452 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 SMTNP53814 917 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 SLC9A9Q8IVB4 645 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 MAP4K3Q8IVH8 894 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 LSM14BQ9BX40 385 aaKnown RBP20.17■□□□□ 0.82
USP39-201ENST00000323701 AZI2Q9H6S1 392 aa20.17■□□□□ 0.82
USP39-201ENST00000323701 FANCGO15287 622 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 EXOC3O60645 756 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 MAPK4P31152 587 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 PTPN14Q15678 1187 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 MEA1Q16626 185 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 CYP26C1Q6V0L0 522 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 IFNL1Q8IU54 200 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 TRAPPC12Q8WVT3 735 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 PKNOX2Q96KN3 472 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 NLRC4Q9NPP4 1024 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 ARHGAP28Q9P2N2 729 aa20.16■□□□□ 0.82
USP39-201ENST00000323701 ABL1P00519 1130 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 PLEKP08567 350 aaPredicted RBP20.15■□□□□ 0.82
USP39-201ENST00000323701 ARL2P36404 184 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 RTP1P59025 263 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 DLG4P78352 724 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 MKRN4PQ13434 485 aaPredicted RBP20.15■□□□□ 0.82
USP39-201ENST00000323701 PLCB4Q15147 1175 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 ZNF467Q7Z7K2 595 aaPredicted RBP20.15■□□□□ 0.82
USP39-201ENST00000323701 TMTC1Q8IUR5 882 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 C17orf75Q9HAS0 396 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 METTL14Q9HCE5 456 aaKnown RBP20.15■□□□□ 0.82
USP39-201ENST00000323701 NRBP2Q9NSY0 501 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 HSPBP1Q9NZL4 362 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 RBM47A0AV96 593 aaKnown RBP20.15■□□□□ 0.82
USP39-201ENST00000323701 GOLGA8IPA6NC78 632 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 GOLGA8JA6NMD2 632 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 CNGA1P29973 690 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 NEK11Q8NG66 645 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 GOLGA5Q8TBA6 731 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 PLEKHO2Q8TD55 490 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 SLC7A3Q8WY07 619 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 TINF2Q9BSI4 451 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 MKNK1Q9BUB5 465 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 VTA1Q9NP79 307 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 FLRT1Q9NZU1 646 aa20.15■□□□□ 0.82
USP39-201ENST00000323701 REXO2Q9Y3B8 237 aaKnown RBP20.15■□□□□ 0.82
USP39-201ENST00000323701 LRRC53A6NM62 1247 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 CBWD6Q4V339 395 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 CBWD3Q5JTY5 395 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 CBWD5Q5RIA9 395 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 RRAGAQ7L523 313 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 GANQ9H2C0 597 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 RNPEPQ9H4A4 650 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 FRMD4BQ9Y2L6 1034 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 TLL2Q9Y6L7 1015 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 MAFO75444 373 aaPredicted RBP20.14■□□□□ 0.81
USP39-201ENST00000323701 EDN1P05305 212 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 PON1P27169 355 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 POLR2FP61218 127 aaKnown RBP20.14■□□□□ 0.81
USP39-201ENST00000323701 PRAMEF19Q5SWL8 479 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 MORN1Q5T089 497 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 TRIM65Q6PJ69 517 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 C17orf99Q6UX52 265 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 PLPPR4Q7Z2D5 763 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 C12orf56Q8IXR9 622 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 ATP8B4Q8TF62 1192 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 AFG1LQ8WV93 481 aa20.14■□□□□ 0.81
USP39-201ENST00000323701 EMSYQ7Z589 1322 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms