RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 DDX47Q9H0S4 455 aaKnown RBP12.31□□□□□ -0.44
VPS39-201ENST00000318006 SLC40A1Q9NP59 571 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 MID2Q9UJV3 735 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 USP32Q8NFA0 1604 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 MAN1A2O60476 641 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 RGS9BPQ6ZS82 235 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 RAPH1Q70E73 1250 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 LCA5Q86VQ0 697 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 FAM96AQ9H5X1 160 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 MLXIPLQ9NP71 852 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 ZC4H2Q9NQZ6 224 aa12.31□□□□□ -0.44
VPS39-201ENST00000318006 RICTORQ6R327 1708 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 FAM187AA6NFU0 413 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 ZBBXA8MT70 800 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 HNRNPCL1O60812 293 aaKnown RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 DDIT3P35638 169 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 MRPS35P82673 323 aaKnown RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 BYSLQ13895 437 aaKnown RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 TFDP1Q14186 410 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 SLC27A3Q5K4L6 730 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 LRIG3Q6UXM1 1119 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 SPATA21Q7Z572 469 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 SESTD1Q86VW0 696 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 ZNF512BQ96KM6 892 aaPredicted RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 FAM81BQ96LP2 452 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 SPC25Q9HBM1 224 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 SAYSD1Q9NPB0 183 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 NUB1Q9Y5A7 615 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 KRT10P13645 584 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 CASP1P29466 404 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 CCND2P30279 289 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 ARFIP2P53365 341 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 SNAP25P60880 206 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 IL1RL1Q01638 556 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 SF3B3Q15393 1217 aaKnown RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 MIS18BP1Q6P0N0 1132 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 L2HGDHQ9H9P8 463 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 SMYD2Q9NRG4 433 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 BARHL2Q9NY43 387 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 SNX12Q9UMY4 172 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 A0A1W2PQC6 194 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 KIF28PB7ZC32 967 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 KRT37O76014 449 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 GPSM2P81274 684 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 PPP1R18Q6NYC8 613 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 ICA1LQ8NDH6 482 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 RIN2Q8WYP3 895 aaPredicted RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 DPF2Q92785 391 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 NSUN4Q96CB9 384 aaKnown RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 CCDC124Q96CT7 223 aaKnown RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 PCIF1Q9H4Z3 704 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 TDRD3Q9H7E2 651 aaKnown RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 PRDM4Q9UKN5 801 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 APOBEC2Q9Y235 224 aaKnown RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 POTEMA6NI47 508 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 ZFXP17010 805 aaPredicted RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 RFX5P48382 616 aaPredicted RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 GFPT1Q06210 699 aaPredicted RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 ORC2Q13416 577 aaPredicted RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 LRRC14Q15048 493 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 DALRD3Q5D0E6 543 aaKnown RBP12.3□□□□□ -0.44
VPS39-201ENST00000318006 NEDD1Q8NHV4 660 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 SEC16BQ96JE7 1060 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 HESX1Q9UBX0 185 aa12.3□□□□□ -0.44
VPS39-201ENST00000318006 COPEO14579 308 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 H2AFXP16104 143 aaPredicted RBP12.29□□□□□ -0.44
VPS39-201ENST00000318006 TBC1D10BQ4KMP7 808 aaPredicted RBP12.29□□□□□ -0.44
VPS39-201ENST00000318006 TTC25Q96NG3 672 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 GINM1Q9NU53 330 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 PCDHA6Q9UN73 950 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 PCDHA8Q9Y5H6 950 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 MYO3BQ8WXR4 1341 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 ARHGEF28Q8N1W1 1705 aaKnown RBP12.29□□□□□ -0.44
VPS39-201ENST00000318006 HSPA8P11142 646 aaKnown RBP12.29□□□□□ -0.44
VPS39-201ENST00000318006 PYGBP11216 843 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 EIF2AK2P19525 551 aaKnown RBP12.29□□□□□ -0.44
VPS39-201ENST00000318006 IGBP1P78318 339 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 CCNA1P78396 465 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 CTTNQ14247 550 aaKnown RBP12.29□□□□□ -0.44
VPS39-201ENST00000318006 GPR162Q16538 588 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 AGGF1Q8N302 714 aaeCLIP12.29□□□□□ -0.44
VPS39-201ENST00000318006 ZNF341Q9BYN7 854 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 SMYD3Q9H7B4 428 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 DCTN4Q9UJW0 460 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 TRIM49BA6NDI0 452 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 DNAJC6O75061 913 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 CAMTA2O94983 1202 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 HSPA9P38646 679 aaKnown RBP12.29□□□□□ -0.44
VPS39-201ENST00000318006 GABPAQ06546 454 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 FSCBQ5H9T9 825 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 SHC4Q6S5L8 630 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 RASGRP2Q7LDG7 609 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 PCGF5Q86SE9 256 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 SGSM3Q96HU1 749 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 CALR3Q96L12 384 aaKnown RBP12.29□□□□□ -0.44
VPS39-201ENST00000318006 SEPT10Q9P0V9 454 aa12.29□□□□□ -0.44
VPS39-201ENST00000318006 USP17L15C9J2P7 530 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 USP17L13C9JLJ4 530 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 USP17L11C9JVI0 530 aa12.28□□□□□ -0.44
VPS39-201ENST00000318006 USP17L18D6R9N7 530 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms