RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 BTBD7Q9P203 1132 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 SLC9A2Q9UBY0 812 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 CHORDC1Q9UHD1 332 aaPredicted RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 SNCAIPQ9Y6H5 919 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 ANKRD63C9JTQ0 380 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 SLC16A3O15427 465 aaKnown RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 HOXA7P31268 230 aaPredicted RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 NPTX2P47972 431 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 VSNL1P62760 191 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 MAP2K1Q02750 393 aaPredicted RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 BFSP1Q12934 665 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 BMS1Q14692 1282 aaKnown RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 ALKBH5Q6P6C2 394 aaKnown RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 CBWD2Q8IUF1 395 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 GLYCTKQ8IVS8 523 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 GSPT2Q8IYD1 628 aaKnown RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 REPS2Q8NFH8 660 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 KCND2Q9NZV8 630 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 HYOU1Q9Y4L1 999 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 PRKCEQ02156 737 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 ASTE1Q2TB18 679 aaPredicted RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 GNPTABQ3T906 1256 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 LMBRD2Q68DH5 695 aaPredicted RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 CC2D1AQ6P1N0 951 aaPredicted RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 OTUD6AQ7L8S5 288 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 NIPA1Q7RTP0 329 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 IRF2BP2Q7Z5L9 587 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 ZNF526Q8TF50 670 aaPredicted RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 BSNDQ8WZ55 320 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 POMGNT1Q8WZA1 660 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 UPF1Q92900 1129 aaKnown RBP eCLIP12.51□□□□□ -0.41
CUX1-202ENST00000292538 INTS2Q9H0H0 1204 aaKnown RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 LUC7LQ9NQ29 371 aaKnown RBP12.51□□□□□ -0.41
CUX1-202ENST00000292538 GINM1Q9NU53 330 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 JRKLQ9Y4A0 524 aa12.51□□□□□ -0.41
CUX1-202ENST00000292538 SSU72P8A0A1W2PR75 194 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 HNRNPDLO14979 420 aaKnown RBP12.5□□□□□ -0.41
CUX1-202ENST00000292538 EVI5O60447 810 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 PSAPP07602 524 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 TNNT3P45378 269 aaPredicted RBP12.5□□□□□ -0.41
CUX1-202ENST00000292538 VAMP7P51809 220 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 SLC7A5Q01650 507 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 STXBP2Q15833 593 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 ZC3H3Q8IXZ2 948 aaKnown RBP12.5□□□□□ -0.41
CUX1-202ENST00000292538 C4orf19Q8IY42 314 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 KRT222Q8N1A0 295 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 ATP6V0A1Q93050 837 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 TMEM206Q9H813 350 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 ACP6Q9NPH0 428 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 CLEC11AQ9Y240 323 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 KCNA2P16389 499 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 SFNP31947 248 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 STAT1P42224 750 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 POLGP54098 1239 aaPredicted RBP12.5□□□□□ -0.41
CUX1-202ENST00000292538 PPP3CAQ08209 521 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 TAF3Q5VWG9 929 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 FOXR2Q6PJQ5 311 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 INPP4AQ96PE3 977 aaPredicted RBP12.5□□□□□ -0.41
CUX1-202ENST00000292538 ABCB6Q9NP58 842 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 ADARB2Q9NS39 739 aaKnown RBP12.5□□□□□ -0.41
CUX1-202ENST00000292538 TOPORSQ9NS56 1045 aaPredicted RBP12.5□□□□□ -0.41
CUX1-202ENST00000292538 AIPL1Q9NZN9 384 aa12.5□□□□□ -0.41
CUX1-202ENST00000292538 POTEB2H3BUK9 544 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 RBAK-RBAKDNI3L0D1 243 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 SASH3O75995 380 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 CNGA1P29973 690 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 PPM1KQ8N3J5 372 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 XXYLT1Q8NBI6 393 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 KAT5Q92993 513 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 OSBPL9Q96SU4 736 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 EDEM3Q9BZQ6 932 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 ZCCHC17Q9NP64 241 aaKnown RBP12.49□□□□□ -0.41
CUX1-202ENST00000292538 SIX2Q9NPC8 291 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 DBR1Q9UK59 544 aaKnown RBP12.49□□□□□ -0.41
CUX1-202ENST00000292538 LRRIQ4A6NIV6 560 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 FDX1P10109 184 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 MUTP22033 750 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 MAPK8IP2Q13387 824 aaPredicted RBP12.49□□□□□ -0.41
CUX1-202ENST00000292538 LY6KQ17RY6 165 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 LONRF2Q1L5Z9 754 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 PAPD7Q5XG87 772 aaKnown RBP12.49□□□□□ -0.41
CUX1-202ENST00000292538 PHLDB3Q6NSJ2 640 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 ZNF746Q6NUN9 644 aaPredicted RBP12.49□□□□□ -0.41
CUX1-202ENST00000292538 VPS36Q86VN1 386 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 PROCA1Q8NCQ7 364 aaPredicted RBP12.49□□□□□ -0.41
CUX1-202ENST00000292538 GPRASP2Q96D09 838 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 BORCS6Q96GS4 357 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 MAP3K20Q9NYL2 800 aaKnown RBP12.49□□□□□ -0.41
CUX1-202ENST00000292538 TBX20Q9UMR3 447 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 SNX12Q9UMY4 172 aa12.49□□□□□ -0.41
CUX1-202ENST00000292538 FOXN3O00409 490 aaPredicted RBP12.48□□□□□ -0.41
CUX1-202ENST00000292538 YBX3P16989 372 aaKnown RBP eCLIP12.48□□□□□ -0.413e-6■■■□□ 15.7
CUX1-202ENST00000292538 KCTD17Q8N5Z5 321 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 GOLGA5Q8TBA6 731 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 FAM213AQ9BRX8 229 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 PLCB1Q9NQ66 1216 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 IREB2P48200 963 aaKnown RBP12.48□□□□□ -0.41
CUX1-202ENST00000292538 CETN1Q12798 172 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 SEZ6Q53EL9 994 aa12.48□□□□□ -0.41
CUX1-202ENST00000292538 MIS18BP1Q6P0N0 1132 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms