RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 K7ERI5 159 aa8.4□□□□□ -1.07
USP3-201ENST00000268049 SPOPO43791 374 aa8.4□□□□□ -1.07
USP3-201ENST00000268049 CYP2C9P11712 490 aa8.4□□□□□ -1.07
USP3-201ENST00000268049 PPARDQ03181 441 aa8.4□□□□□ -1.07
USP3-201ENST00000268049 KRT71Q3SY84 523 aa8.4□□□□□ -1.07
USP3-201ENST00000268049 BCAP29Q9UHQ4 241 aa8.4□□□□□ -1.07
USP3-201ENST00000268049 NCKAP1Q9Y2A7 1128 aa8.4□□□□□ -1.07
USP3-201ENST00000268049 SCG2P13521 617 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 PCYT1AP49585 367 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 PHEXP78562 749 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 SEPT2Q15019 361 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 RINT1Q6NUQ1 792 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 CDC42EP5Q6NZY7 148 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 XRRA1Q6P2D8 792 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 PSRC1Q6PGN9 363 aaPredicted RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 SNX19Q92543 992 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 KIAA1586Q9HCI6 787 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 DBR1Q9UK59 544 aaKnown RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 GMEB2Q9UKD1 530 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 PAIP2BQ9ULR5 123 aaKnown RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 UTP11Q9Y3A2 253 aaKnown RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 RPTORQ8N122 1335 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 RGPD8O14715 1765 aaPredicted RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 SPTLC2O15270 562 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 BAG2O95816 211 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 CYP2D6P10635 497 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 TFAMQ00059 246 aaKnown RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 PDCD2Q16342 344 aaPredicted RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.39□□□□□ -1.07
USP3-201ENST00000268049 KIAA1755Q5JYT7 1200 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 PPP1R21Q6ZMI0 780 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 RIPOR3Q96MK2 946 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.39□□□□□ -1.07
USP3-201ENST00000268049 MON2Q7Z3U7 1717 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 EIF3CLB5ME19 914 aaKnown RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 SART1O43290 800 aaKnown RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 FBXW4P57775 412 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 SCYL2Q6P3W7 929 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 CYP26C1Q6V0L0 522 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 EIF3CQ99613 913 aaKnown RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 IRF2BPLQ9H1B7 796 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 METTL14Q9HCE5 456 aaKnown RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 TLL1O43897 1013 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 GJB1P08034 283 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 KLRC2P26717 231 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 SLC16A2P36021 539 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 RAB27AP51159 221 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 TRIM14Q14142 442 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 C3orf67Q6ZVT6 689 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 DIS3L2Q8IYB7 885 aaKnown RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 OR6B3Q8NGW1 331 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 ZNF274Q96GC6 653 aaPredicted RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 CLSTN2Q9H4D0 955 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 ZBTB22O15209 634 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 CTNNB1P35222 781 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 EPHB3P54753 998 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 ITIH3Q06033 890 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 NAA30Q147X3 362 aaPredicted RBP8.39□□□□□ -1.07
USP3-201ENST00000268049 IGSF22Q8N9C0 903 aa8.39□□□□□ -1.07
USP3-201ENST00000268049 ZFXP17010 805 aaPredicted RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 KCNB1Q14721 858 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 HHATQ5VTY9 493 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 NME8Q8N427 588 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 SPDL1Q96EA4 605 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 ZNF512BQ96KM6 892 aaPredicted RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 LMBRD1Q9NUN5 540 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 UTP18Q9Y5J1 556 aaKnown RBP eCLIP8.38□□□□□ -1.07
USP3-201ENST00000268049 ABCC6O95255 1503 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 ZNF189O75820 626 aaPredicted RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 FGBP02675 491 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 CYP21A2P08686 494 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 PPM1AP35813 382 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 OR1G1P47890 313 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 EFNA5P52803 228 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 UBL4BQ8N7F7 174 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 CCHCR1Q8TD31 782 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 SEPT1Q8WYJ6 367 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 ZNF512Q96ME7 567 aaPredicted RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 PLIN2Q99541 437 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 CENPKQ9BS16 269 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 VPS54Q9P1Q0 977 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 GADD45BO75293 160 aaPredicted RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 SEC31AO94979 1220 aaKnown RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 HSPA6P17066 643 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 KLRK1P26718 216 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 ARL4AP40617 200 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 RFX5P48382 616 aaPredicted RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 FANCCQ00597 558 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 DGKHQ86XP1 1220 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 CMTR1Q8N1G2 835 aaKnown RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 ARHGAP18Q8N392 663 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 IQCDQ96DY2 449 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 DTNBP1Q96EV8 351 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 SPACA7Q96KW9 195 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 TRIM56Q9BRZ2 755 aaKnown RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 MSTO1Q9BUK6 570 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 TSSK1BQ9BXA7 367 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 MAGEF1Q9HAY2 307 aa8.38□□□□□ -1.07
USP3-201ENST00000268049 GEMIN8Q9NWZ8 242 aaKnown RBP8.38□□□□□ -1.07
USP3-201ENST00000268049 ERAP1Q9NZ08 941 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms