RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 TOB1P50616 345 aaPredicted RBP12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 EMILIN3Q9NT22 766 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 INTS13Q9NVM9 706 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 PRR12Q9ULL5 1215 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 SNX24Q9Y343 169 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 TUBGCP6Q96RT7 1819 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 YDJCA8MPS7 323 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 HSPA6P17066 643 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 ARHGAP4P98171 946 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 PHLDB3Q6NSJ2 640 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 ARHGEF18Q6ZSZ5 1173 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.43□□□□□ -0.425e-14■■■□□ 15.6
CLSTN3-201ENST00000266546 TMEM260Q9NX78 707 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 HOXC10Q9NYD6 342 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 HACL1Q9UJ83 578 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 TACC3Q9Y6A5 838 aa12.43□□□□□ -0.42
CLSTN3-201ENST00000266546 C4AP0C0L4 1744 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 SBF2Q86WG5 1849 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 ARHGEF35A5YM69 484 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 TBX3O15119 743 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 AARSP49588 968 aaKnown RBP eCLIP12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 KCNG1Q9UIX4 513 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 NOD1Q9Y239 953 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 UBR3Q6ZT12 1888 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 TAF1LQ8IZX4 1826 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 DAPK3O43293 454 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 RPS6KA5O75582 802 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 STAMBPO95630 424 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 SNAP25P60880 206 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 ARHGEF16Q5VV41 709 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 OTUD6AQ7L8S5 288 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 ARMC2Q8NEN0 867 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 MYCBPAPQ8TBZ2 947 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 EDEM3Q9BZQ6 932 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 TXLNGQ9NUQ3 528 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 TPX2Q9ULW0 747 aaKnown RBP12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 LTBP3Q9NS15 1303 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 PVALEFA0A1B0GWK0 134 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 SART1O43290 800 aaKnown RBP12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 RASIP1Q5U651 963 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 ANGEL2Q5VTE6 544 aaKnown RBP12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 PDXDC1Q6P996 788 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 MOXD1Q6UVY6 613 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 GPC2Q8N158 579 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 LRRC8CQ8TDW0 803 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 SGSM3Q96HU1 749 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 CDHR1Q96JP9 859 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 DNAJC7Q99615 494 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.42□□□□□ -0.426e-7■■■□□ 15.3
CLSTN3-201ENST00000266546 TRIM4Q9C037 500 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 EHD2Q9NZN4 543 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 AMACRQ9UHK6 382 aa12.42□□□□□ -0.42
CLSTN3-201ENST00000266546 CFAP73A6NFT4 308 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 RHOBTB3O94955 611 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 MYCLP12524 364 aaPredicted RBP12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 TMOD1P28289 359 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 SPP2Q13103 211 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 KDM7AQ6ZMT4 941 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 ZFPM1Q8IX07 1006 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 GUF1Q8N442 669 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 MSL3Q8N5Y2 521 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 OR2W6PQ8NHA6 318 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 GDAP1Q8TB36 358 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 GRK7Q8WTQ7 553 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 SEC16BQ96JE7 1060 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 TRIM9Q9C026 710 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 POTEMA6NI47 508 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 PHF20L1A8MW92 1017 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 ATF2P15336 505 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 SARSP49591 514 aaKnown RBP12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 KLK7P49862 253 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 LLGL1Q15334 1064 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 SAMD7Q7Z3H4 446 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 PHLDB2Q86SQ0 1253 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 KCTD17Q8N5Z5 321 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 GCNT4Q9P109 453 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 ZHX2Q9Y6X8 837 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 SSU72P8A0A1W2PR75 194 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USP17L15C9J2P7 530 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USP17L13C9JLJ4 530 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USP17L11C9JVI0 530 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USP17L18D6R9N7 530 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USP17L22D6RA61 530 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USP17L17D6RBQ6 530 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USP17L19D6RCP7 530 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USP17L20D6RJB6 530 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USP17L24Q0WX57 530 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USP17L6PQ6QN14 398 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 YIPF3Q9GZM5 350 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 SYNCQ9H7C4 482 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 USTQ9Y2C2 406 aa12.41□□□□□ -0.42
CLSTN3-201ENST00000266546 UBXN2AP68543 259 aa12.4□□□□□ -0.42
CLSTN3-201ENST00000266546 STK4Q13043 487 aa12.4□□□□□ -0.42
CLSTN3-201ENST00000266546 NT5DC1Q5TFE4 455 aa12.4□□□□□ -0.42
CLSTN3-201ENST00000266546 CAPRIN2Q6IMN6 1127 aaKnown RBP12.4□□□□□ -0.42
CLSTN3-201ENST00000266546 MIER3Q7Z3K6 550 aa12.4□□□□□ -0.42
CLSTN3-201ENST00000266546 SPATA24Q86W54 205 aa12.4□□□□□ -0.42
CLSTN3-201ENST00000266546 SCYL3Q8IZE3 742 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms