RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 CALML4Q96GE6 196 aa18.61■□□□□ 0.57
SDCBP-201ENST00000260130 PDLIM2Q96JY6 352 aa18.61■□□□□ 0.57
SDCBP-201ENST00000260130 NLRP4Q96MN2 994 aa18.61■□□□□ 0.57
SDCBP-201ENST00000260130 CLIC6Q96NY7 704 aa18.61■□□□□ 0.57
SDCBP-201ENST00000260130 PLIN2Q99541 437 aa18.61■□□□□ 0.57
SDCBP-201ENST00000260130 FTHL17Q9BXU8 183 aa18.61■□□□□ 0.57
SDCBP-201ENST00000260130 ERVK-5Q9HDB9 667 aa18.61■□□□□ 0.57
SDCBP-201ENST00000260130 TMEM63CQ9P1W3 806 aa18.61■□□□□ 0.57
SDCBP-201ENST00000260130 CFAP45Q9UL16 551 aa18.61■□□□□ 0.57
SDCBP-201ENST00000260130 SIP14410 1827 aa18.6■□□□□ 0.57
SDCBP-201ENST00000260130 CYP11B2P19099 503 aa18.6■□□□□ 0.57
SDCBP-201ENST00000260130 DEFB103AP81534 67 aa18.6■□□□□ 0.57
SDCBP-201ENST00000260130 SPECC1Q5M775 1068 aa18.6■□□□□ 0.57
SDCBP-201ENST00000260130 FAM43BQ6ZT52 329 aaPredicted RBP18.6■□□□□ 0.57
SDCBP-201ENST00000260130 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.59■□□□□ 0.57
SDCBP-201ENST00000260130 ENPP3O14638 875 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 PPP6R2O75170 966 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 AMHP03971 560 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 SRGAP2CP0DJJ0 459 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 ARL2P36404 184 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 DNM1Q05193 864 aaKnown RBP18.59■□□□□ 0.57
SDCBP-201ENST00000260130 MAEAQ7L5Y9 396 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 EPSTI1Q96J88 318 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 INO80BQ9C086 356 aaPredicted RBP18.59■□□□□ 0.57
SDCBP-201ENST00000260130 CCSER1Q9C0I3 900 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 SZT2Q5T011 3432 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 TMEM119Q4V9L6 283 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 USP49Q70CQ1 688 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 HERC6Q8IVU3 1022 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 TMX1Q9H3N1 280 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 IFT122Q9HBG6 1241 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 TCHHQ07283 1943 aa18.59■□□□□ 0.57
SDCBP-201ENST00000260130 TPM2P07951 284 aa18.58■□□□□ 0.57
SDCBP-201ENST00000260130 PRKCSHP14314 528 aaPredicted RBP18.58■□□□□ 0.57
SDCBP-201ENST00000260130 MYOCDQ8IZQ8 938 aa18.58■□□□□ 0.57
SDCBP-201ENST00000260130 RNF149Q8NC42 400 aa18.58■□□□□ 0.57
SDCBP-201ENST00000260130 RASSF8Q8NHQ8 419 aa18.58■□□□□ 0.57
SDCBP-201ENST00000260130 PBX4Q9BYU1 374 aa18.58■□□□□ 0.57
SDCBP-201ENST00000260130 POLR3FQ9H1D9 316 aaPredicted RBP18.58■□□□□ 0.57
SDCBP-201ENST00000260130 GPRC5CQ9NQ84 441 aa18.58■□□□□ 0.57
SDCBP-201ENST00000260130 SYCE3A1L190 88 aa18.58■□□□□ 0.56
SDCBP-201ENST00000260130 CSDE1O75534 798 aaKnown RBP18.58■□□□□ 0.56
SDCBP-201ENST00000260130 KARSQ15046 597 aaKnown RBP18.58■□□□□ 0.56
SDCBP-201ENST00000260130 FAM102BQ5T8I3 360 aa18.58■□□□□ 0.56
SDCBP-201ENST00000260130 RTN4RL1Q86UN2 441 aaPredicted RBP18.58■□□□□ 0.56
SDCBP-201ENST00000260130 SYMPKQ92797 1274 aaKnown RBP18.58■□□□□ 0.56
SDCBP-201ENST00000260130 ATP6V1DQ9Y5K8 247 aa18.58■□□□□ 0.56
SDCBP-201ENST00000260130 ARID2Q68CP9 1835 aa18.58■□□□□ 0.56
SDCBP-201ENST00000260130 GLRA2P23416 452 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 PBX2P40425 430 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 RABGGTBP53611 331 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 TFDP1Q14186 410 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 GPR153Q6NV75 609 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 TMCO2Q7Z6W1 182 aaPredicted RBP18.57■□□□□ 0.56
SDCBP-201ENST00000260130 SYT2Q8N9I0 419 aaPredicted RBP18.57■□□□□ 0.56
SDCBP-201ENST00000260130 KCNG4Q8TDN1 519 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 ASAP3Q8TDY4 903 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 TSPYL2Q9H2G4 693 aaPredicted RBP18.57■□□□□ 0.56
SDCBP-201ENST00000260130 FGFR4P22455 802 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 TXLNAP40222 546 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 POU5F1BQ06416 359 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 RAB30Q15771 203 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 SRGAP1Q7Z6B7 1085 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 LINC01599Q8WXQ3 324 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 TOP1MTQ969P6 601 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 ZBED2Q9BTP6 218 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 MSRAQ9UJ68 235 aa18.57■□□□□ 0.56
SDCBP-201ENST00000260130 GJB5O95377 273 aa18.56■□□□□ 0.56
SDCBP-201ENST00000260130 SSBP05455 408 aaKnown RBP eCLIP18.56■□□□□ 0.56
SDCBP-201ENST00000260130 PLA2G4BP0C869 781 aa18.56■□□□□ 0.56
SDCBP-201ENST00000260130 PLCG1P19174 1290 aa18.56■□□□□ 0.56
SDCBP-201ENST00000260130 SFPQP23246 707 aaKnown RBP eCLIP18.56■□□□□ 0.56
SDCBP-201ENST00000260130 DNAJB2P25686 324 aa18.56■□□□□ 0.56
SDCBP-201ENST00000260130 CAPSQ13938 189 aa18.56■□□□□ 0.56
SDCBP-201ENST00000260130 RINT1Q6NUQ1 792 aa18.56■□□□□ 0.56
SDCBP-201ENST00000260130 ADAM2Q99965 735 aa18.56■□□□□ 0.56
SDCBP-201ENST00000260130 CCDC39Q9UFE4 941 aa18.56■□□□□ 0.56
SDCBP-201ENST00000260130 RCOR1Q9UKL0 485 aa18.56■□□□□ 0.56
SDCBP-201ENST00000260130 PCDHA11Q9Y5I1 949 aa18.56■□□□□ 0.56
SDCBP-201ENST00000260130 DENND3A2RUS2 1198 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 MGEA5O60502 916 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 PHKA2P46019 1235 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 PTENP60484 403 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 FAM117BQ6P1L5 589 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.55■□□□□ 0.56
SDCBP-201ENST00000260130 C1orf186Q6ZWK4 172 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 RUSC1Q9BVN2 902 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 POLD4Q9HCU8 107 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 RGS18Q9NS28 235 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 CUTAO60888 179 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 OFD1O75665 1012 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 UPP2O95045 317 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 ZSCAN20P17040 1043 aaPredicted RBP18.55■□□□□ 0.56
SDCBP-201ENST00000260130 SLC12A3P55017 1021 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 KIFAP3Q92845 792 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 CHAMP1Q96JM3 812 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 MINDY3Q9H8M7 445 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 BLOC1S4Q9NUP1 217 aa18.55■□□□□ 0.56
SDCBP-201ENST00000260130 MYH15Q9Y2K3 1946 aa18.54■□□□□ 0.56
SDCBP-201ENST00000260130 TLL1O43897 1013 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms