RNA–Protein interactions for RNA: ENSMUST00000054384.5

Trim56-201, Transcript of E3 ubiquitin-protein ligase TRIM56, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim56, Length 9,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56-201ENSMUST00000054384 Arfip2Q8K221 341 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Cnot8Q9D8X5 292 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Add3Q9QYB5 706 aaKnown RBP12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gbp11A9YVJ5 442 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Serpina1bP22599 413 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Tcp11l2Q8K1H7 517 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Erbb4Q61527 1308 aa12.67□□□□□ -0.38
Trim56-201ENSMUST00000054384 Zfp626A0A0U1RQ84 676 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Trim15G3UY57 292 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Fam161bQ8CB59 589 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Pcdhb11Q91UZ8 797 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Rgs10Q9CQE5 181 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Snx24Q9CRB0 169 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gm5483B2RV77 97 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Hoxa13Q62424 386 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Sapcd2Q9D818 391 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Arhgap26Q6ZQ82 814 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 GypcQ78HU7 95 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 PrcpQ7TMR0 491 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Nod1Q8BHB0 953 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Pramef12Q9D2F1 463 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Cib4Q9D9N5 185 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Adam22Q9R1V6 904 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Hic1Q9R1Y5 733 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Znf335A2A5K6 1337 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gm3755K7N743 167 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Cacna2d1O08532 1103 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Oog4Q4G0C7 502 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Pomgnt2Q8BW41 605 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Tlr3Q99MB1 905 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Msh6P54276 1358 aaKnown RBP12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Snap23O09044 210 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ifnb1P01575 182 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Psmb9P28076 219 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Wdr60Q8C761 999 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Irak4Q8R4K2 459 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Tbc1d22aQ8R5A6 516 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 MrgbpQ9DAT2 204 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gm7535F7CXE4 302 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Mrps26Q80ZS3 200 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Sptlc3Q8BG54 563 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 FtcdQ91XD4 541 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Chl1P70232 1209 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Inf2Q0GNC1 1273 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Fam160a1Q505K2 1081 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Pla2g4eQ50L42 875 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Zcchc18Q8VD24 393 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 EcsitQ9QZH6 435 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Anapc7Q9WVM3 565 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 NyxP83503 476 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Xxylt1Q3U4G3 392 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Olfm4Q3UZZ4 505 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 Sarm1Q6PDS3 724 aa12.66□□□□□ -0.38
Trim56-201ENSMUST00000054384 CoblQ5NBX1 1337 aaKnown RBP12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ube4aE9Q735 1028 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Mrpl47Q8K2Y7 252 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Anapc4Q91W96 807 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Nsmce3Q9CPR8 279 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Pdzrn4E9PUZ9 1014 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Zfp788E9Q980 884 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Lrrc6O88978 473 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gfpt1P47856 697 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Map4k1P70218 827 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Faf2Q3TDN2 445 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Lrrc8dQ8BGR2 859 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Frmd4aQ8BIE6 1020 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Rgs22G3UYX5 1258 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 MafgO54790 162 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 StrnO55106 780 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 S100a9P31725 113 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Def8Q99J78 448 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 OoepQ9CWE6 164 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Fip1l1Q9D824 581 aaKnown RBP12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Sucla2Q9Z2I9 463 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Hdac6Q9Z2V5 1149 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Coq7P97478 217 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ddx17Q501J6 650 aaKnown RBP12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Tgfb1i1Q62219 461 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Dcaf5Q80T85 946 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Zcrb1Q9CZ96 217 aaKnown RBP12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ppp1r3fQ9JIG4 799 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Cd2apQ9JLQ0 637 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Msr1P30204 458 aaKnown RBP12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Usp10P52479 792 aaKnown RBP12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Tfcp2l1Q3UNW5 479 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ppp1r1bQ60829 194 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 NfrkbQ6PIJ4 1296 aaKnown RBP12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ano4Q8C5H1 955 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gm21083A0A0G2JFD5 256 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Stmn3O70166 180 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Cdh2P15116 906 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Gpr182P43142 395 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 S100gP97816 79 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ces3aQ63880 571 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Ces3bQ8VCU1 571 aa12.65□□□□□ -0.38
Trim56-201ENSMUST00000054384 Pdcd11Q6NS46 1862 aaKnown RBP12.65□□□□□ -0.39
Trim56-201ENSMUST00000054384 Serpinb3cA2RSF9 386 aa12.65□□□□□ -0.39
Trim56-201ENSMUST00000054384 Maml3D4QGC2 1135 aa12.65□□□□□ -0.39
Trim56-201ENSMUST00000054384 Hspa2P17156 633 aa12.65□□□□□ -0.39
Trim56-201ENSMUST00000054384 Gpr162Q3UN16 588 aa12.65□□□□□ -0.39
Retrieved 100 of 22,080 RNA–protein pairs in 210.4 ms