RNA–Protein interactions for RNA: YGR003W

CUL3, Transcript of Ubiquitin-protein ligase, yeast

Gene CUL3, Length 2,235 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUL3	YGR003W	OSH7	P38755	437 aa		4.3	□□□□□ -1.72
CUL3	YGR003W	DLD1	P32891	587 aa		4.3	□□□□□ -1.72
CUL3	YGR003W	PUS6	P53294	404 aa		4.3	□□□□□ -1.72
CUL3	YGR003W	NSG2	P53898	299 aa		4.3	□□□□□ -1.72
CUL3	YGR003W	CCP1	P00431	361 aa		4.28	□□□□□ -1.72
CUL3	YGR003W	JJJ3	P47138	172 aa		4.27	□□□□□ -1.73
CUL3	YGR003W	YBL086C	P38177	466 aa		4.27	□□□□□ -1.73
CUL3	YGR003W	CKB1	P43639	278 aa		4.26	□□□□□ -1.73
CUL3	YGR003W	YMR196W	Q04336	1088 aa		4.26	□□□□□ -1.73
CUL3	YGR003W	THI72	Q08579	599 aa		4.26	□□□□□ -1.73
CUL3	YGR003W	MAM3	Q12296	706 aa		4.26	□□□□□ -1.73
CUL3	YGR003W	CCT8	P47079	568 aa	Known RBP	4.26	□□□□□ -1.73
CUL3	YGR003W	FPK1	P53739	893 aa		4.26	□□□□□ -1.73
CUL3	YGR003W	SBP1	P10080	294 aa	Known RBP	4.23	□□□□□ -1.73
CUL3	YGR003W	AI1	P03875	834 aa		4.23	□□□□□ -1.73
CUL3	YGR003W	TRM1	P15565	570 aa	Known RBP	4.23	□□□□□ -1.73
CUL3	YGR003W	BUB1	P41695	1021 aa	Known RBP RIP-Chip data	4.23	□□□□□ -1.73	not detected
CUL3	YGR003W	VAC17	P25591	423 aa		4.22	□□□□□ -1.73
CUL3	YGR003W	IES2	P40154	320 aa		4.21	□□□□□ -1.74
CUL3	YGR003W	YFL066C	P43538	392 aa		4.21	□□□□□ -1.74
CUL3	YGR003W	APP1	P53933	587 aa		4.21	□□□□□ -1.74
CUL3	YGR003W	YPR053C	Q6Q5F3	151 aa		4.19	□□□□□ -1.74
CUL3	YGR003W	SCJ1	P25303	377 aa		4.18	□□□□□ -1.74
CUL3	YGR003W	NAM8	Q00539	523 aa	Known RBP	4.18	□□□□□ -1.74
CUL3	YGR003W	EMW1	P42842	904 aa	Known RBP	4.18	□□□□□ -1.74
CUL3	YGR003W	NUP42	P49686	430 aa	Known RBP	4.17	□□□□□ -1.74
CUL3	YGR003W	ITT1	Q04638	464 aa		4.17	□□□□□ -1.74
CUL3	YGR003W	CDC19	P00549	500 aa	Known RBP	4.16	□□□□□ -1.74
CUL3	YGR003W	HST2	P53686	357 aa		4.16	□□□□□ -1.74
CUL3	YGR003W	DSF2	P38213	736 aa		4.15	□□□□□ -1.74
CUL3	YGR003W	CUZ1	P53899	274 aa		4.15	□□□□□ -1.75
CUL3	YGR003W	MMP1	Q12372	583 aa		4.15	□□□□□ -1.75
CUL3	YGR003W	CEM1	P39525	442 aa		4.14	□□□□□ -1.75
CUL3	YGR003W	MKS1	P34072	584 aa		4.14	□□□□□ -1.75
CUL3	YGR003W	SKN7	P38889	622 aa		4.14	□□□□□ -1.75
CUL3	YGR003W	DFG5	Q05031	458 aa		4.14	□□□□□ -1.75
CUL3	YGR003W	BDS1	Q08347	646 aa		4.13	□□□□□ -1.75
CUL3	YGR003W	YMR187C	Q03236	431 aa		4.12	□□□□□ -1.75
CUL3	YGR003W	DIT2	P21595	489 aa		4.11	□□□□□ -1.75
CUL3	YGR003W	ADE12	P80210	433 aa	Known RBP	4.11	□□□□□ -1.75
CUL3	YGR003W	GLN1	P32288	370 aa	Known RBP	4.11	□□□□□ -1.75
CUL3	YGR003W	VTC4	P47075	721 aa		4.11	□□□□□ -1.75
CUL3	YGR003W	TDA6	Q06466	467 aa		4.11	□□□□□ -1.75
CUL3	YGR003W	ESS1	P22696	170 aa		4.09	□□□□□ -1.75
CUL3	YGR003W	SBE2	P42223	864 aa	Known RBP	4.09	□□□□□ -1.75
CUL3	YGR003W	YJU3	P28321	313 aa		4.07	□□□□□ -1.76
CUL3	YGR003W	DAL1	P32375	460 aa		4.07	□□□□□ -1.76
CUL3	YGR003W	FBP26	P32604	452 aa		4.07	□□□□□ -1.76
CUL3	YGR003W	SYT1	Q06836	1226 aa		4.07	□□□□□ -1.76
CUL3	YGR003W	YMR265C	Q03508	461 aa	Known RBP	4.06	□□□□□ -1.76
CUL3	YGR003W	STE6	P12866	1290 aa		4.06	□□□□□ -1.76
CUL3	YGR003W	DIT1	P21623	536 aa		4.05	□□□□□ -1.76
CUL3	YGR003W	YNR014W	P53719	212 aa		4.05	□□□□□ -1.76
CUL3	YGR003W	RSC30	P38781	883 aa		4.05	□□□□□ -1.76
CUL3	YGR003W	FIG4	P42837	879 aa		4.05	□□□□□ -1.76
CUL3	YGR003W	KRE33	P53914	1056 aa	Known RBP	4.03	□□□□□ -1.76
CUL3	YGR003W	MCX1	P38323	520 aa	Predicted RBP	4.03	□□□□□ -1.76
CUL3	YGR003W	UBP15	P50101	1230 aa		4.02	□□□□□ -1.77
CUL3	YGR003W	YDR461C-A	Q2V2P7	80 aa		4.02	□□□□□ -1.77
CUL3	YGR003W	SPB4	P25808	606 aa	Predicted RBP	4.02	□□□□□ -1.77
CUL3	YGR003W	YCK2	P23292	546 aa	Known RBP	4.01	□□□□□ -1.77
CUL3	YGR003W	DLD3	P39976	496 aa	Known RBP	4.01	□□□□□ -1.77
CUL3	YGR003W	GLT1	Q12680	2145 aa	Known RBP	4.01	□□□□□ -1.77
CUL3	YGR003W	ARG8	P18544	423 aa		3.99	□□□□□ -1.77
CUL3	YGR003W	MAC1	P35192	417 aa		3.99	□□□□□ -1.77
CUL3	YGR003W	AMN1	P38285	549 aa	Predicted RBP	3.99	□□□□□ -1.77
CUL3	YGR003W	ATF2	P53296	535 aa		3.99	□□□□□ -1.77
CUL3	YGR003W	RPP2B	P02400	110 aa	Known RBP	3.99	□□□□□ -1.77
CUL3	YGR003W	BOI2	P39969	1040 aa		3.99	□□□□□ -1.77
CUL3	YGR003W	ISU1	Q03020	165 aa		3.99	□□□□□ -1.77
CUL3	YGR003W	PKH3	Q03306	898 aa	Predicted RBP	3.99	□□□□□ -1.77
CUL3	YGR003W	TEC1	P18412	486 aa		3.98	□□□□□ -1.77
CUL3	YGR003W	LSB6	P42951	607 aa		3.98	□□□□□ -1.77
CUL3	YGR003W	YDR215C	Q12240	137 aa		3.98	□□□□□ -1.77
CUL3	YGR003W	SLN1	P39928	1220 aa	Predicted RBP	3.97	□□□□□ -1.77
CUL3	YGR003W	ATG20	Q07528	640 aa		3.97	□□□□□ -1.77
CUL3	YGR003W	MCA1	Q08601	432 aa		3.97	□□□□□ -1.77
CUL3	YGR003W	MSN5	P52918	1224 aa		3.96	□□□□□ -1.78
CUL3	YGR003W	GPM1	P00950	247 aa	Known RBP	3.95	□□□□□ -1.78
CUL3	YGR003W	SLA1	P32790	1244 aa		3.95	□□□□□ -1.78
CUL3	YGR003W	TAT1	P38085	619 aa		3.95	□□□□□ -1.78
CUL3	YGR003W	YPR084W	Q06821	456 aa		3.95	□□□□□ -1.78
CUL3	YGR003W	MET1	P36150	593 aa		3.94	□□□□□ -1.78
CUL3	YGR003W	IRC24	P40580	263 aa		3.94	□□□□□ -1.78
CUL3	YGR003W	FPS1	P23900	669 aa		3.93	□□□□□ -1.78
CUL3	YGR003W	SSN3	P39073	555 aa		3.93	□□□□□ -1.78
CUL3	YGR003W	AHP1	P38013	176 aa	Known RBP	3.93	□□□□□ -1.78
CUL3	YGR003W	TY1A-DR3	Q12441	440 aa		3.93	□□□□□ -1.78
CUL3	YGR003W	KTR1	P27810	393 aa	Known RBP	3.92	□□□□□ -1.78
CUL3	YGR003W	SAS10	Q12136	610 aa	Predicted RBP	3.91	□□□□□ -1.78
CUL3	YGR003W	GUT2	P32191	649 aa		3.91	□□□□□ -1.78
CUL3	YGR003W	ALO1	P54783	526 aa	Known RBP	3.9	□□□□□ -1.79
CUL3	YGR003W	WTM2	Q12206	467 aa		3.9	□□□□□ -1.79
CUL3	YGR003W	NAF1	P53919	492 aa	Known RBP	3.89	□□□□□ -1.79
CUL3	YGR003W	YPL034W	Q03083	165 aa		3.89	□□□□□ -1.79
CUL3	YGR003W	KNS1	P32350	737 aa	Predicted RBP	3.88	□□□□□ -1.79
CUL3	YGR003W	DAT1	P13483	248 aa	Known RBP	3.87	□□□□□ -1.79
CUL3	YGR003W	OMA1	P36163	345 aa		3.87	□□□□□ -1.79
CUL3	YGR003W	PRY1	P47032	299 aa		3.87	□□□□□ -1.79
CUL3	YGR003W	RAD59	Q12223	238 aa		3.87	□□□□□ -1.79

Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms