RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 KIAA1468Q9P260 1216 aa2.95□□□□□ -1.94
VPS35-212ENST00000640313 ECM2O94769 699 aaPredicted RBP2.94□□□□□ -1.94
VPS35-212ENST00000640313 COL9A1P20849 921 aa2.94□□□□□ -1.94
VPS35-212ENST00000640313 TJAP1Q5JTD0 557 aa2.94□□□□□ -1.94
VPS35-212ENST00000640313 PPP1R15BQ5SWA1 713 aa2.94□□□□□ -1.94
VPS35-212ENST00000640313 FBXW7Q969H0 707 aa2.94□□□□□ -1.94
VPS35-212ENST00000640313 CDKN2AIPQ9NXV6 580 aaPredicted RBP2.94□□□□□ -1.94
VPS35-212ENST00000640313 PCDHGA10Q9Y5H3 936 aa2.94□□□□□ -1.94
VPS35-212ENST00000640313 RGL2O15211 777 aa2.93□□□□□ -1.94
VPS35-212ENST00000640313 FAM98CQ17RN3 349 aaKnown RBP2.93□□□□□ -1.94
VPS35-212ENST00000640313 LCE2AQ5TA79 106 aaPredicted RBP2.93□□□□□ -1.94
VPS35-212ENST00000640313 PPP1R18Q6NYC8 613 aa2.93□□□□□ -1.94
VPS35-212ENST00000640313 PDZRN3Q9UPQ7 1066 aa2.93□□□□□ -1.94
VPS35-212ENST00000640313 HPS5Q9UPZ3 1129 aa2.93□□□□□ -1.94
VPS35-212ENST00000640313 PDE4AP27815 886 aa2.92□□□□□ -1.94
VPS35-212ENST00000640313 TYW1BQ6NUM6 668 aa2.92□□□□□ -1.94
VPS35-212ENST00000640313 LRCH3Q96II8 777 aa2.92□□□□□ -1.94
VPS35-212ENST00000640313 EIF4ENIF1Q9NRA8 985 aaKnown RBP2.92□□□□□ -1.94
VPS35-212ENST00000640313 TRIM6-TRIM34B2RNG4 842 aa2.91□□□□□ -1.94
VPS35-212ENST00000640313 PHF14O94880 888 aa2.91□□□□□ -1.94
VPS35-212ENST00000640313 PPP4CP60510 307 aa2.91□□□□□ -1.94
VPS35-212ENST00000640313 MAP3K9P80192 1104 aa2.91□□□□□ -1.94
VPS35-212ENST00000640313 C6orf132Q5T0Z8 1188 aa2.91□□□□□ -1.94
VPS35-212ENST00000640313 TREML4Q6UXN2 200 aa2.91□□□□□ -1.94
VPS35-212ENST00000640313 IL21Q9HBE4 155 aa2.91□□□□□ -1.94
VPS35-212ENST00000640313 SEPT9Q9UHD8 586 aaPredicted RBP2.91□□□□□ -1.94
VPS35-212ENST00000640313 PKD2Q13563 968 aa2.9□□□□□ -1.95
VPS35-212ENST00000640313 NCKAP5LQ9HCH0 1330 aa2.9□□□□□ -1.95
VPS35-212ENST00000640313 POTECB2RU33 542 aa2.89□□□□□ -1.95
VPS35-212ENST00000640313 DGAT1O75907 488 aa2.89□□□□□ -1.95
VPS35-212ENST00000640313 MYT1Q01538 1121 aa2.89□□□□□ -1.95
VPS35-212ENST00000640313 HS6ST3Q8IZP7 471 aa2.89□□□□□ -1.95
VPS35-212ENST00000640313 MTRQ99707 1265 aa2.89□□□□□ -1.95
VPS35-212ENST00000640313 EPAS1Q99814 870 aa2.89□□□□□ -1.95
VPS35-212ENST00000640313 TMUB1Q9BVT8 246 aa2.89□□□□□ -1.95
VPS35-212ENST00000640313 DNAJC5Q9H3Z4 198 aa2.89□□□□□ -1.95
VPS35-212ENST00000640313 LOC100996750A0A140TA64 210 aa2.88□□□□□ -1.95
VPS35-212ENST00000640313 GGCXP38435 758 aa2.88□□□□□ -1.95
VPS35-212ENST00000640313 TRIM67Q6ZTA4 783 aa2.88□□□□□ -1.95
VPS35-212ENST00000640313 PACS2Q86VP3 889 aa2.88□□□□□ -1.95
VPS35-212ENST00000640313 ZNF516Q92618 1163 aa2.88□□□□□ -1.95
VPS35-212ENST00000640313 KRTAP4-6Q9BYQ5 205 aa2.88□□□□□ -1.95
VPS35-212ENST00000640313 RYDENQ9NUL5 291 aaKnown RBP2.88□□□□□ -1.95
VPS35-212ENST00000640313 STK17AQ9UEE5 414 aa2.88□□□□□ -1.95
VPS35-212ENST00000640313 PRR20EP86478 221 aa2.87□□□□□ -1.95
VPS35-212ENST00000640313 PRR20CP86479 221 aa2.87□□□□□ -1.95
VPS35-212ENST00000640313 PRR20DP86480 221 aa2.87□□□□□ -1.95
VPS35-212ENST00000640313 PRR20BP86481 221 aa2.87□□□□□ -1.95
VPS35-212ENST00000640313 PRR20AP86496 221 aa2.87□□□□□ -1.95
VPS35-212ENST00000640313 MFSD10Q14728 455 aa2.87□□□□□ -1.95
VPS35-212ENST00000640313 PKDCCQ504Y2 493 aa2.87□□□□□ -1.95
VPS35-212ENST00000640313 DDX27Q96GQ7 796 aaKnown RBP2.87□□□□□ -1.95
VPS35-212ENST00000640313 EMILIN3Q9NT22 766 aa2.87□□□□□ -1.95
VPS35-212ENST00000640313 SAMD7Q7Z3H4 446 aa2.86□□□□□ -1.95
VPS35-212ENST00000640313 LARP6Q9BRS8 491 aaKnown RBP2.86□□□□□ -1.95
VPS35-212ENST00000640313 TSKSQ9UJT2 592 aa2.86□□□□□ -1.95
VPS35-212ENST00000640313 WIPF1O43516 503 aa2.85□□□□□ -1.95
VPS35-212ENST00000640313 SLC19A1P41440 591 aa2.85□□□□□ -1.95
VPS35-212ENST00000640313 NKX1-1Q15270 411 aaPredicted RBP2.85□□□□□ -1.95
VPS35-212ENST00000640313 NKX2-3Q8TAU0 364 aa2.85□□□□□ -1.95
VPS35-212ENST00000640313 WFS1O76024 890 aa2.84□□□□□ -1.95
VPS35-212ENST00000640313 INSM1Q01101 510 aaPredicted RBP2.84□□□□□ -1.95
VPS35-212ENST00000640313 SPRYD7Q5W111 196 aa2.84□□□□□ -1.95
VPS35-212ENST00000640313 ZNF598Q86UK7 904 aaKnown RBP2.84□□□□□ -1.95
VPS35-212ENST00000640313 NECTIN2Q92692 538 aa2.84□□□□□ -1.95
VPS35-212ENST00000640313 EMID1Q96A84 441 aaPredicted RBP2.84□□□□□ -1.95
VPS35-212ENST00000640313 GDF9O60383 454 aa2.83□□□□□ -1.96
VPS35-212ENST00000640313 APLP1P51693 650 aa2.83□□□□□ -1.96
VPS35-212ENST00000640313 AAASQ9NRG9 546 aa2.83□□□□□ -1.96
VPS35-212ENST00000640313 RNF223E7ERA6 249 aa2.82□□□□□ -1.96
VPS35-212ENST00000640313 ZPR1O75312 459 aa2.82□□□□□ -1.96
VPS35-212ENST00000640313 HDGFP51858 240 aaKnown RBP2.82□□□□□ -1.96
VPS35-212ENST00000640313 PRSS12P56730 875 aa2.82□□□□□ -1.96
VPS35-212ENST00000640313 EN1Q05925 392 aaPredicted RBP2.82□□□□□ -1.96
VPS35-212ENST00000640313 NFX1Q12986 1120 aaKnown RBP2.82□□□□□ -1.96
VPS35-212ENST00000640313 CAMK2BQ13554 666 aa2.82□□□□□ -1.96
VPS35-212ENST00000640313 CRIPAKQ8N1N5 446 aa2.82□□□□□ -1.96
VPS35-212ENST00000640313 CERKQ8TCT0 537 aa2.82□□□□□ -1.96
VPS35-212ENST00000640313 TATDN2Q93075 761 aa2.82□□□□□ -1.96
VPS35-212ENST00000640313 RBM33Q96EV2 1170 aaKnown RBP2.82□□□□□ -1.96
VPS35-212ENST00000640313 CDCA7LQ96GN5 454 aa2.82□□□□□ -1.96
VPS35-212ENST00000640313 FAM187AA6NFU0 413 aa2.81□□□□□ -1.96
VPS35-212ENST00000640313 SMAPO00193 183 aa2.81□□□□□ -1.96
VPS35-212ENST00000640313 CHGAP10645 457 aaKnown RBP2.81□□□□□ -1.96
VPS35-212ENST00000640313 ANKLE1Q8NAG6 615 aa2.81□□□□□ -1.96
VPS35-212ENST00000640313 FAM198AQ9UFP1 575 aa2.81□□□□□ -1.96
VPS35-212ENST00000640313 NBPF26B4DH59 902 aa2.8□□□□□ -1.96
VPS35-212ENST00000640313 C3orf80F5H4A9 247 aa2.8□□□□□ -1.96
VPS35-212ENST00000640313 ST8SIA5O15466 376 aa2.8□□□□□ -1.96
VPS35-212ENST00000640313 COPS2P61201 443 aa2.8□□□□□ -1.96
VPS35-212ENST00000640313 TSR1Q2NL82 804 aaKnown RBP2.8□□□□□ -1.96
VPS35-212ENST00000640313 ZNF697Q5TEC3 545 aa2.8□□□□□ -1.96
VPS35-212ENST00000640313 LIAT1Q6ZQX7 453 aa2.8□□□□□ -1.96
VPS35-212ENST00000640313 PNMA3Q9UL41 463 aa2.8□□□□□ -1.96
VPS35-212ENST00000640313 MAP3K7O43318 606 aa2.79□□□□□ -1.96
VPS35-212ENST00000640313 AVPP01185 164 aa2.79□□□□□ -1.96
VPS35-212ENST00000640313 LMOD2Q6P5Q4 547 aa2.79□□□□□ -1.96
VPS35-212ENST00000640313 SLF2Q8IX21 1173 aa2.79□□□□□ -1.96
VPS35-212ENST00000640313 DDX12PQ92771 950 aa2.79□□□□□ -1.96
VPS35-212ENST00000640313 PRR14Q9BWN1 585 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms