RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 PKD2Q13563 968 aa13.46□□□□□ -0.25
VPS39-214ENST00000614932 KLHL34Q8N239 644 aa13.46□□□□□ -0.25
VPS39-214ENST00000614932 KDM5BQ9UGL1 1544 aa13.45□□□□□ -0.26
VPS39-214ENST00000614932 POLR3GLQ9BT43 218 aa13.45□□□□□ -0.26
VPS39-214ENST00000614932 PDCL3Q9H2J4 239 aa13.45□□□□□ -0.26
VPS39-214ENST00000614932 NCOA1Q15788 1441 aa13.44□□□□□ -0.26
VPS39-214ENST00000614932 TSPY4P0CV99 314 aa13.44□□□□□ -0.26
VPS39-214ENST00000614932 TSPY10P0CW01 314 aa13.44□□□□□ -0.26
VPS39-214ENST00000614932 ROCK1Q13464 1354 aa13.44□□□□□ -0.26
VPS39-214ENST00000614932 DDRGK1Q96HY6 314 aa13.44□□□□□ -0.26
VPS39-214ENST00000614932 ERCC6L2Q5T890 1561 aa13.43□□□□□ -0.26
VPS39-214ENST00000614932 CLCN1P35523 988 aa13.43□□□□□ -0.26
VPS39-214ENST00000614932 NAP1L2Q9ULW6 460 aaPredicted RBP13.43□□□□□ -0.26
VPS39-214ENST00000614932 ANKRD30BQ9BXX2 1392 aa13.43□□□□□ -0.26
VPS39-214ENST00000614932 ABCA8O94911 1581 aa13.43□□□□□ -0.26
VPS39-214ENST00000614932 BBXQ8WY36 941 aaPredicted RBP13.43□□□□□ -0.26
VPS39-214ENST00000614932 CHD1O14646 1710 aa13.42□□□□□ -0.26
VPS39-214ENST00000614932 EIF4G2P78344 907 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS39-214ENST00000614932 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.41□□□□□ -0.26
VPS39-214ENST00000614932 ANKRD30AQ9BXX3 1397 aa13.41□□□□□ -0.26
VPS39-214ENST00000614932 KDM2AQ9Y2K7 1162 aa13.4□□□□□ -0.26
VPS39-214ENST00000614932 NUP155O75694 1391 aa13.4□□□□□ -0.26
VPS39-214ENST00000614932 ANKRD50Q9ULJ7 1429 aa13.39□□□□□ -0.27
VPS39-214ENST00000614932 TCERG1O14776 1098 aaKnown RBP13.39□□□□□ -0.27
VPS39-214ENST00000614932 PDE4AP27815 886 aa13.38□□□□□ -0.27
VPS39-214ENST00000614932 PZPP20742 1482 aa13.38□□□□□ -0.27
VPS39-214ENST00000614932 C9orf84Q5VXU9 1444 aa13.38□□□□□ -0.27
VPS39-214ENST00000614932 ABCC10Q5T3U5 1492 aa13.38□□□□□ -0.27
VPS39-214ENST00000614932 ITSN2Q9NZM3 1697 aa13.37□□□□□ -0.27
VPS39-214ENST00000614932 CDC42BPAQ5VT25 1732 aa13.37□□□□□ -0.27
VPS39-214ENST00000614932 BACH2Q9BYV9 841 aa13.36□□□□□ -0.27
VPS39-214ENST00000614932 GTF2E1P29083 439 aaPredicted RBP13.36□□□□□ -0.27
VPS39-214ENST00000614932 L1TD1Q5T7N2 865 aaKnown RBP13.36□□□□□ -0.27
VPS39-214ENST00000614932 RPRD2Q5VT52 1461 aaKnown RBP13.35□□□□□ -0.27
VPS39-214ENST00000614932 KIF15Q9NS87 1388 aa13.35□□□□□ -0.27
VPS39-214ENST00000614932 CHMP4BQ9H444 224 aaKnown RBP13.34□□□□□ -0.27
VPS39-214ENST00000614932 ADCY10Q96PN6 1610 aa13.34□□□□□ -0.27
VPS39-214ENST00000614932 ZBED9Q6R2W3 1325 aa13.33□□□□□ -0.28
VPS39-214ENST00000614932 TPM2P07951 284 aa13.33□□□□□ -0.28
VPS39-214ENST00000614932 CANXP27824 592 aaKnown RBP13.33□□□□□ -0.28
VPS39-214ENST00000614932 RGL3Q3MIN7 710 aa13.33□□□□□ -0.28
VPS39-214ENST00000614932 CCDC184Q52MB2 194 aa13.33□□□□□ -0.28
VPS39-214ENST00000614932 RSPH4AQ5TD94 716 aa13.33□□□□□ -0.28
VPS39-214ENST00000614932 PAXIP1Q6ZW49 1069 aaPredicted RBP13.33□□□□□ -0.28
VPS39-214ENST00000614932 FRAT2O75474 233 aaPredicted RBP13.33□□□□□ -0.28
VPS39-214ENST00000614932 IPO4Q8TEX9 1081 aaKnown RBP13.33□□□□□ -0.28
VPS39-214ENST00000614932 MS4A1P11836 297 aa13.32□□□□□ -0.28
VPS39-214ENST00000614932 SENP3-EIF4A1A0A087X0R7 540 aa13.32□□□□□ -0.28
VPS39-214ENST00000614932 TEX14Q8IWB6 1497 aa13.32□□□□□ -0.28
VPS39-214ENST00000614932 KIAA1107Q9UPP5 1409 aa13.31□□□□□ -0.28
VPS39-214ENST00000614932 STAC3Q96MF2 364 aa13.31□□□□□ -0.28
VPS39-214ENST00000614932 ARHGAP5Q13017 1502 aa13.31□□□□□ -0.28
VPS39-214ENST00000614932 NCBP3Q53F19 620 aaKnown RBP13.3□□□□□ -0.28
VPS39-214ENST00000614932 ADGBQ8N7X0 1667 aa13.29□□□□□ -0.28
VPS39-214ENST00000614932 ADGRL2O95490 1459 aa13.29□□□□□ -0.28
VPS39-214ENST00000614932 RNF123Q5XPI4 1314 aa13.29□□□□□ -0.28
VPS39-214ENST00000614932 MBD5Q9P267 1494 aa13.29□□□□□ -0.28
VPS39-214ENST00000614932 CROCC2H7BZ55 1655 aa13.29□□□□□ -0.28
VPS39-214ENST00000614932 TTC37Q6PGP7 1564 aa13.28□□□□□ -0.28
VPS39-214ENST00000614932 SAMD9LQ8IVG5 1584 aa13.28□□□□□ -0.28
VPS39-214ENST00000614932 SYCP2Q9BX26 1530 aa13.28□□□□□ -0.28
VPS39-214ENST00000614932 FAM9BQ8IZU0 186 aa13.28□□□□□ -0.28
VPS39-214ENST00000614932 KIF7Q2M1P5 1343 aa13.28□□□□□ -0.28
VPS39-214ENST00000614932 NCLP19338 710 aaKnown RBP13.27□□□□□ -0.28
VPS39-214ENST00000614932 ARXQ96QS3 562 aa13.27□□□□□ -0.28
VPS39-214ENST00000614932 CCDC7Q96M83 1385 aa13.27□□□□□ -0.29
VPS39-214ENST00000614932 CDC42BPBQ9Y5S2 1711 aa13.26□□□□□ -0.29
VPS39-214ENST00000614932 SMAP1Q8IYB5 467 aaPredicted RBP13.26□□□□□ -0.29
VPS39-214ENST00000614932 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.26□□□□□ -0.29
VPS39-214ENST00000614932 CCDC141Q6ZP82 1450 aa13.25□□□□□ -0.29
VPS39-214ENST00000614932 AFAP1Q8N556 730 aa13.25□□□□□ -0.29
VPS39-214ENST00000614932 CARD11Q9BXL7 1154 aa13.25□□□□□ -0.29
VPS39-214ENST00000614932 ARID4BQ4LE39 1312 aaPredicted RBP13.25□□□□□ -0.29
VPS39-214ENST00000614932 SLC4A3P48751 1232 aa13.25□□□□□ -0.29
VPS39-214ENST00000614932 SMG6Q86US8 1419 aaKnown RBP13.25□□□□□ -0.29
VPS39-214ENST00000614932 ABCC2Q92887 1545 aa13.23□□□□□ -0.29
VPS39-214ENST00000614932 USP47Q96K76 1375 aa13.23□□□□□ -0.29
VPS39-214ENST00000614932 POGKQ9P215 609 aa13.23□□□□□ -0.29
VPS39-214ENST00000614932 CNTLNQ9NXG0 1405 aa13.22□□□□□ -0.29
VPS39-214ENST00000614932 MRS2Q9HD23 443 aa13.22□□□□□ -0.29
VPS39-214ENST00000614932 SHROOM2Q13796 1616 aa13.22□□□□□ -0.29
VPS39-214ENST00000614932 MAP7D2Q96T17 732 aa13.21□□□□□ -0.29
VPS39-214ENST00000614932 PRKRIP1Q9H875 184 aaPredicted RBP13.21□□□□□ -0.29
VPS39-214ENST00000614932 PLEKHH2Q8IVE3 1493 aa13.21□□□□□ -0.29
VPS39-214ENST00000614932 SHANK2Q9UPX8 1470 aa13.21□□□□□ -0.29
VPS39-214ENST00000614932 PREX2Q70Z35 1606 aa13.21□□□□□ -0.29
VPS39-214ENST00000614932 ARHGEF12Q9NZN5 1544 aa13.21□□□□□ -0.29
VPS39-214ENST00000614932 ST20-MTHFSA0A0A6YYL1 179 aa13.21□□□□□ -0.3
VPS39-214ENST00000614932 EFCAB2Q5VUJ9 269 aa13.21□□□□□ -0.3
VPS39-214ENST00000614932 SPATA31E1Q6ZUB1 1445 aa13.2□□□□□ -0.3
VPS39-214ENST00000614932 ZHX1Q9UKY1 873 aaPredicted RBP13.19□□□□□ -0.3
VPS39-214ENST00000614932 NBPF1Q3BBV0 1214 aa13.19□□□□□ -0.3
VPS39-214ENST00000614932 XRCC6P12956 609 aaKnown RBP eCLIP13.18□□□□□ -0.3
VPS39-214ENST00000614932 NUDCQ9Y266 331 aa13.18□□□□□ -0.3
VPS39-214ENST00000614932 TRAPPC8Q9Y2L5 1435 aa13.18□□□□□ -0.3
VPS39-214ENST00000614932 FAM135AQ9P2D6 1515 aa13.17□□□□□ -0.3
VPS39-214ENST00000614932 ARHGEF5Q12774 1597 aa13.17□□□□□ -0.3
VPS39-214ENST00000614932 ESPNB1AK53 854 aa13.17□□□□□ -0.3
VPS39-214ENST00000614932 UTP14CQ5TAP6 766 aaKnown RBP13.17□□□□□ -0.3
VPS39-214ENST00000614932 ZCCHC11Q5TAX3 1644 aaKnown RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms