RNA–Protein interactions for RNA: ENST00000612350.1

PTCHD3P1-201, Transcript of patched domain containing 3 pseudogene 1, humanhuman

BASIC

Gene PTCHD3P1, Length 537 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3P1-201ENST00000612350 SAMD9LQ8IVG5 1584 aa12.19□□□□□ -0.46
PTCHD3P1-201ENST00000612350 GGT6Q6P531 493 aa12.19□□□□□ -0.46
PTCHD3P1-201ENST00000612350 UPF1Q92900 1129 aaKnown RBP eCLIP12.19□□□□□ -0.46
PTCHD3P1-201ENST00000612350 MED14O60244 1454 aa12.19□□□□□ -0.46
PTCHD3P1-201ENST00000612350 RNF17Q9BXT8 1623 aaKnown RBP12.19□□□□□ -0.46
PTCHD3P1-201ENST00000612350 ATP1B4Q9UN42 357 aaPredicted RBP12.18□□□□□ -0.46
PTCHD3P1-201ENST00000612350 NPHP4O75161 1426 aaPredicted RBP12.18□□□□□ -0.46
PTCHD3P1-201ENST00000612350 PREX2Q70Z35 1606 aa12.18□□□□□ -0.46
PTCHD3P1-201ENST00000612350 PLXNC1O60486 1568 aa12.18□□□□□ -0.46
PTCHD3P1-201ENST00000612350 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.18□□□□□ -0.46
PTCHD3P1-201ENST00000612350 CLIP1P30622 1438 aa12.16□□□□□ -0.46
PTCHD3P1-201ENST00000612350 DEPDC5O75140 1603 aa12.15□□□□□ -0.46
PTCHD3P1-201ENST00000612350 A2MP01023 1474 aa12.15□□□□□ -0.46
PTCHD3P1-201ENST00000612350 SPAG9O60271 1321 aaKnown RBP12.15□□□□□ -0.46
PTCHD3P1-201ENST00000612350 FBXO31Q5XUX0 539 aaPredicted RBP12.15□□□□□ -0.46
PTCHD3P1-201ENST00000612350 THEMISQ8N1K5 641 aaPredicted RBP12.14□□□□□ -0.47
PTCHD3P1-201ENST00000612350 TNRQ92752 1358 aa12.14□□□□□ -0.47
PTCHD3P1-201ENST00000612350 SYNMO15061 1565 aa12.13□□□□□ -0.47
PTCHD3P1-201ENST00000612350 FAM135BQ49AJ0 1406 aa12.13□□□□□ -0.47
PTCHD3P1-201ENST00000612350 FMN1Q68DA7 1419 aa12.12□□□□□ -0.47
PTCHD3P1-201ENST00000612350 IQGAP1P46940 1657 aa12.12□□□□□ -0.47
PTCHD3P1-201ENST00000612350 ATP7AQ04656 1500 aa12.11□□□□□ -0.47
PTCHD3P1-201ENST00000612350 LRRIQ1Q96JM4 1722 aa12.11□□□□□ -0.47
PTCHD3P1-201ENST00000612350 HNRNPMP52272 730 aaKnown RBP eCLIP12.11□□□□□ -0.47
PTCHD3P1-201ENST00000612350 CDC42BPAQ5VT25 1732 aa12.11□□□□□ -0.47
PTCHD3P1-201ENST00000612350 XIRP1Q702N8 1843 aaKnown RBP12.1□□□□□ -0.47
PTCHD3P1-201ENST00000612350 INO80Q9ULG1 1556 aaPredicted RBP12.09□□□□□ -0.47
PTCHD3P1-201ENST00000612350 ZNF777Q9ULD5 760 aaPredicted RBP12.09□□□□□ -0.47
PTCHD3P1-201ENST00000612350 SYCP2Q9BX26 1530 aa12.09□□□□□ -0.47
PTCHD3P1-201ENST00000612350 UGGT1Q9NYU2 1555 aa12.09□□□□□ -0.47
PTCHD3P1-201ENST00000612350 PZPP20742 1482 aa12.08□□□□□ -0.47
PTCHD3P1-201ENST00000612350 MIA2Q96PC5 1412 aa12.08□□□□□ -0.48
PTCHD3P1-201ENST00000612350 FAM135AQ9P2D6 1515 aa12.07□□□□□ -0.48
PTCHD3P1-201ENST00000612350 SLC4A2P04920 1241 aa12.07□□□□□ -0.48
PTCHD3P1-201ENST00000612350 NLRP1Q9C000 1473 aa12.07□□□□□ -0.48
PTCHD3P1-201ENST00000612350 KIAA1107Q9UPP5 1409 aa12.06□□□□□ -0.48
PTCHD3P1-201ENST00000612350 ZC3H13Q5T200 1668 aaKnown RBP12.06□□□□□ -0.48
PTCHD3P1-201ENST00000612350 ARHGAP35Q9NRY4 1499 aa12.05□□□□□ -0.48
PTCHD3P1-201ENST00000612350 ADGBQ8N7X0 1667 aa12.05□□□□□ -0.48
PTCHD3P1-201ENST00000612350 GPATCH8Q9UKJ3 1502 aaKnown RBP12.04□□□□□ -0.48
PTCHD3P1-201ENST00000612350 TRIM52Q96A61 297 aa12.03□□□□□ -0.48
PTCHD3P1-201ENST00000612350 ROBO1Q9Y6N7 1651 aa12.03□□□□□ -0.48
PTCHD3P1-201ENST00000612350 CAPN15O75808 1086 aa12.02□□□□□ -0.49
PTCHD3P1-201ENST00000612350 DHX29Q7Z478 1369 aaKnown RBP12.02□□□□□ -0.49
PTCHD3P1-201ENST00000612350 EEA1Q15075 1411 aa12.02□□□□□ -0.49
PTCHD3P1-201ENST00000612350 SPINK5Q9NQ38 1064 aaPredicted RBP12.01□□□□□ -0.49
PTCHD3P1-201ENST00000612350 JCADQ9P266 1359 aa12□□□□□ -0.49
PTCHD3P1-201ENST00000612350 PLEKHH2Q8IVE3 1493 aa12□□□□□ -0.49
PTCHD3P1-201ENST00000612350 KDM5DQ9BY66 1539 aa12□□□□□ -0.49
PTCHD3P1-201ENST00000612350 KIF3BO15066 747 aa11.99□□□□□ -0.49
PTCHD3P1-201ENST00000612350 ZNF772Q68DY9 489 aaPredicted RBP11.99□□□□□ -0.49
PTCHD3P1-201ENST00000612350 WASHC2CQ9Y4E1 1318 aa11.99□□□□□ -0.49
PTCHD3P1-201ENST00000612350 LTKP29376 864 aa11.98□□□□□ -0.49
PTCHD3P1-201ENST00000612350 LRP6O75581 1613 aa11.97□□□□□ -0.49
PTCHD3P1-201ENST00000612350 TMEM94Q12767 1356 aa11.97□□□□□ -0.49
PTCHD3P1-201ENST00000612350 APLP2Q06481 763 aa11.97□□□□□ -0.49
PTCHD3P1-201ENST00000612350 CFDP1Q9UEE9 299 aaPredicted RBP11.97□□□□□ -0.49
PTCHD3P1-201ENST00000612350 CCDC18Q5T9S5 1454 aa11.96□□□□□ -0.49
PTCHD3P1-201ENST00000612350 SCAF11Q99590 1463 aaKnown RBP11.96□□□□□ -0.49
PTCHD3P1-201ENST00000612350 RTEL1-TNFRSF6BF6WH68 1400 aa11.96□□□□□ -0.49
PTCHD3P1-201ENST00000612350 RXRBP28702 533 aa11.96□□□□□ -0.49
PTCHD3P1-201ENST00000612350 CDK12Q9NYV4 1490 aaPredicted RBP11.95□□□□□ -0.5
PTCHD3P1-201ENST00000612350 MBD5Q9P267 1494 aa11.95□□□□□ -0.5
PTCHD3P1-201ENST00000612350 PHLPP1O60346 1717 aa11.95□□□□□ -0.5
PTCHD3P1-201ENST00000612350 DSG3P32926 999 aa11.95□□□□□ -0.5
PTCHD3P1-201ENST00000612350 TXNDC2Q86VQ3 553 aa11.95□□□□□ -0.5
PTCHD3P1-201ENST00000612350 MAP3K1Q13233 1512 aa11.95□□□□□ -0.5
PTCHD3P1-201ENST00000612350 ARHGAP23Q9P227 1491 aa11.95□□□□□ -0.5
PTCHD3P1-201ENST00000612350 CASKIN1Q8WXD9 1431 aa11.94□□□□□ -0.5
PTCHD3P1-201ENST00000612350 NCOA2Q15596 1464 aa11.94□□□□□ -0.5
PTCHD3P1-201ENST00000612350 SPATA31A6Q5VVP1 1343 aa11.93□□□□□ -0.5
PTCHD3P1-201ENST00000612350 ZNF644Q9H582 1327 aaPredicted RBP11.93□□□□□ -0.5
PTCHD3P1-201ENST00000612350 RBM33Q96EV2 1170 aaKnown RBP11.93□□□□□ -0.5
PTCHD3P1-201ENST00000612350 UBR1Q8IWV7 1749 aa11.93□□□□□ -0.5
PTCHD3P1-201ENST00000612350 LRRC9Q6ZRR7 1453 aa11.93□□□□□ -0.5
PTCHD3P1-201ENST00000612350 SLIT1O75093 1534 aa11.92□□□□□ -0.5
PTCHD3P1-201ENST00000612350 UBTFP17480 764 aaKnown RBP11.92□□□□□ -0.5
PTCHD3P1-201ENST00000612350 KCNA6P17658 529 aa11.92□□□□□ -0.5
PTCHD3P1-201ENST00000612350 SLAIN2Q9P270 581 aa11.92□□□□□ -0.5
PTCHD3P1-201ENST00000612350 COL16A1Q07092 1604 aaPredicted RBP11.92□□□□□ -0.5
PTCHD3P1-201ENST00000612350 PROSER2Q86WR7 435 aaPredicted RBP11.91□□□□□ -0.5
PTCHD3P1-201ENST00000612350 ERVK-7P63135 1459 aa11.9□□□□□ -0.5
PTCHD3P1-201ENST00000612350 MEX3CQ5U5Q3 659 aaKnown RBP11.9□□□□□ -0.5
PTCHD3P1-201ENST00000612350 FGD6Q6ZV73 1430 aa11.9□□□□□ -0.5
PTCHD3P1-201ENST00000612350 CCNB3Q8WWL7 1395 aa11.9□□□□□ -0.5
PTCHD3P1-201ENST00000612350 PRDM15P57071 1507 aaPredicted RBP11.88□□□□□ -0.51
PTCHD3P1-201ENST00000612350 SRCAPQ6ZRS2 3230 aa11.88□□□□□ -0.51
PTCHD3P1-201ENST00000612350 EHMT2Q96KQ7 1210 aa11.88□□□□□ -0.51
PTCHD3P1-201ENST00000612350 CFAP65Q6ZU64 1925 aaKnown RBP11.87□□□□□ -0.51
PTCHD3P1-201ENST00000612350 SETBP1Q9Y6X0 1596 aa11.87□□□□□ -0.51
PTCHD3P1-201ENST00000612350 ABCC3O15438 1527 aa11.86□□□□□ -0.51
PTCHD3P1-201ENST00000612350 ZRANB1Q9UGI0 708 aa11.86□□□□□ -0.51
PTCHD3P1-201ENST00000612350 EID1Q9Y6B2 187 aa11.86□□□□□ -0.51
PTCHD3P1-201ENST00000612350 RGS12O14924 1447 aa11.86□□□□□ -0.51
PTCHD3P1-201ENST00000612350 TIAM1Q13009 1591 aa11.85□□□□□ -0.51
PTCHD3P1-201ENST00000612350 MSH6P52701 1360 aa11.85□□□□□ -0.51
PTCHD3P1-201ENST00000612350 SAMD1Q6SPF0 538 aaPredicted RBP11.85□□□□□ -0.51
PTCHD3P1-201ENST00000612350 ZNF219Q9P2Y4 722 aaPredicted RBP11.85□□□□□ -0.51
PTCHD3P1-201ENST00000612350 TET3O43151 1660 aa11.84□□□□□ -0.51
PTCHD3P1-201ENST00000612350 SHPRHQ149N8 1683 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms