RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 COL9A1P20849 921 aa10.85□□□□□ -0.67
LINC00540-201ENST00000611481 CAMK2BQ13554 666 aa10.85□□□□□ -0.67
LINC00540-201ENST00000611481 RGS20O76081 388 aa10.84□□□□□ -0.67
LINC00540-201ENST00000611481 PROX2Q3B8N5 592 aa10.84□□□□□ -0.67
LINC00540-201ENST00000611481 ANKK1Q8NFD2 765 aa10.83□□□□□ -0.68
LINC00540-201ENST00000611481 EPAS1Q99814 870 aa10.83□□□□□ -0.68
LINC00540-201ENST00000611481 DPYSL4O14531 572 aa10.81□□□□□ -0.68
LINC00540-201ENST00000611481 LAPTM4BQ86VI4 370 aa10.81□□□□□ -0.68
LINC00540-201ENST00000611481 A0A0G2JS52 829 aa10.79□□□□□ -0.68
LINC00540-201ENST00000611481 ONECUT3O60422 494 aaPredicted RBP10.79□□□□□ -0.68
LINC00540-201ENST00000611481 C6orf132Q5T0Z8 1188 aa10.79□□□□□ -0.68
LINC00540-201ENST00000611481 KIAA1468Q9P260 1216 aa10.79□□□□□ -0.68
LINC00540-201ENST00000611481 BBXQ8WY36 941 aaPredicted RBP10.77□□□□□ -0.69
LINC00540-201ENST00000611481 SOWAHBA6NEL2 793 aa10.75□□□□□ -0.69
LINC00540-201ENST00000611481 BCAMP50895 628 aa10.75□□□□□ -0.69
LINC00540-201ENST00000611481 ZFRQ96KR1 1074 aaKnown RBP10.75□□□□□ -0.69
LINC00540-201ENST00000611481 NYAP1Q6ZVC0 841 aa10.74□□□□□ -0.69
LINC00540-201ENST00000611481 RBM33Q96EV2 1170 aaKnown RBP10.74□□□□□ -0.69
LINC00540-201ENST00000611481 TRIM6-TRIM34B2RNG4 842 aa10.73□□□□□ -0.69
LINC00540-201ENST00000611481 DDX12PQ92771 950 aa10.73□□□□□ -0.69
LINC00540-201ENST00000611481 ITGBL1O95965 494 aaPredicted RBP10.72□□□□□ -0.69
LINC00540-201ENST00000611481 SEPT9Q9UHD8 586 aaPredicted RBP10.72□□□□□ -0.69
LINC00540-201ENST00000611481 FAM98CQ17RN3 349 aaKnown RBP10.7□□□□□ -0.7
LINC00540-201ENST00000611481 IRX2Q9BZI1 471 aaPredicted RBP10.69□□□□□ -0.7
LINC00540-201ENST00000611481 PDIA6Q15084 440 aa10.68□□□□□ -0.7
LINC00540-201ENST00000611481 WBP1LQ9NX94 342 aa10.68□□□□□ -0.7
LINC00540-201ENST00000611481 SPDYE16A6NNV3 312 aaPredicted RBP10.67□□□□□ -0.7
LINC00540-201ENST00000611481 EN1Q05925 392 aaPredicted RBP10.67□□□□□ -0.7
LINC00540-201ENST00000611481 NBR1Q14596 966 aa10.67□□□□□ -0.7
LINC00540-201ENST00000611481 SPRYD3Q8NCJ5 442 aa10.67□□□□□ -0.7
LINC00540-201ENST00000611481 MAP3K7O43318 606 aa10.66□□□□□ -0.7
LINC00540-201ENST00000611481 PACS2Q86VP3 889 aa10.66□□□□□ -0.7
LINC00540-201ENST00000611481 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.66□□□□□ -0.7
LINC00540-201ENST00000611481 LRCH3Q96II8 777 aa10.65□□□□□ -0.7
LINC00540-201ENST00000611481 TSR3Q9UJK0 312 aaKnown RBP10.65□□□□□ -0.7
LINC00540-201ENST00000611481 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.64□□□□□ -0.71
LINC00540-201ENST00000611481 KCNC4Q03721 635 aa10.63□□□□□ -0.71
LINC00540-201ENST00000611481 TSR1Q2NL82 804 aaKnown RBP10.63□□□□□ -0.71
LINC00540-201ENST00000611481 HPS5Q9UPZ3 1129 aa10.63□□□□□ -0.71
LINC00540-201ENST00000611481 TSKSQ9UJT2 592 aa10.62□□□□□ -0.71
LINC00540-201ENST00000611481 E2F4Q16254 413 aa10.61□□□□□ -0.71
LINC00540-201ENST00000611481 CERKQ8TCT0 537 aa10.59□□□□□ -0.71
LINC00540-201ENST00000611481 CDCA7LQ96GN5 454 aa10.58□□□□□ -0.72
LINC00540-201ENST00000611481 ARIH1Q9Y4X5 557 aaPredicted RBP10.58□□□□□ -0.72
LINC00540-201ENST00000611481 PRSS12P56730 875 aa10.57□□□□□ -0.72
LINC00540-201ENST00000611481 WDR70Q9NW82 654 aa10.57□□□□□ -0.72
LINC00540-201ENST00000611481 PPP4CP60510 307 aa10.56□□□□□ -0.72
LINC00540-201ENST00000611481 GRXCR2A6NFK2 248 aa10.55□□□□□ -0.72
LINC00540-201ENST00000611481 SMAPO00193 183 aa10.53□□□□□ -0.72
LINC00540-201ENST00000611481 NBPF26B4DH59 902 aa10.52□□□□□ -0.73
LINC00540-201ENST00000611481 PRIM1P49642 420 aaKnown RBP10.52□□□□□ -0.73
LINC00540-201ENST00000611481 PAXIP1Q6ZW49 1069 aaPredicted RBP10.52□□□□□ -0.73
LINC00540-201ENST00000611481 SAMD7Q7Z3H4 446 aa10.52□□□□□ -0.73
LINC00540-201ENST00000611481 CFAP44Q96MT7 982 aa10.52□□□□□ -0.73
LINC00540-201ENST00000611481 FAM198AQ9UFP1 575 aa10.52□□□□□ -0.73
LINC00540-201ENST00000611481 AMER1Q5JTC6 1135 aaPredicted RBP10.51□□□□□ -0.73
LINC00540-201ENST00000611481 TATDN2Q93075 761 aa10.5□□□□□ -0.73
LINC00540-201ENST00000611481 PNMA3Q9UL41 463 aa10.5□□□□□ -0.73
LINC00540-201ENST00000611481 OSBPP22059 807 aa10.49□□□□□ -0.73
LINC00540-201ENST00000611481 HDGFP51858 240 aaKnown RBP10.48□□□□□ -0.73
LINC00540-201ENST00000611481 RBM27Q9P2N5 1060 aaKnown RBP10.48□□□□□ -0.73
LINC00540-201ENST00000611481 C3orf80F5H4A9 247 aa10.47□□□□□ -0.73
LINC00540-201ENST00000611481 TJAP1Q5JTD0 557 aa10.47□□□□□ -0.73
LINC00540-201ENST00000611481 Q6ZNB5 142 aa10.46□□□□□ -0.73
LINC00540-201ENST00000611481 CDHR5Q9HBB8 845 aa10.46□□□□□ -0.73
LINC00540-201ENST00000611481 NUDT18Q6ZVK8 323 aa10.44□□□□□ -0.74
LINC00540-201ENST00000611481 MTRQ99707 1265 aa10.44□□□□□ -0.74
LINC00540-201ENST00000611481 IL21Q9HBE4 155 aa10.44□□□□□ -0.74
LINC00540-201ENST00000611481 LAPTM4AQ15012 233 aa10.43□□□□□ -0.74
LINC00540-201ENST00000611481 RNF40O75150 1001 aa10.42□□□□□ -0.74
LINC00540-201ENST00000611481 NECTIN2Q92692 538 aa10.41□□□□□ -0.74
LINC00540-201ENST00000611481 TTC13Q8NBP0 860 aa10.4□□□□□ -0.74
LINC00540-201ENST00000611481 RTN4Q9NQC3 1192 aaKnown RBP10.4□□□□□ -0.74
LINC00540-201ENST00000611481 NPDC1Q9NQX5 325 aaPredicted RBP10.39□□□□□ -0.75
LINC00540-201ENST00000611481 APLP1P51693 650 aa10.38□□□□□ -0.75
LINC00540-201ENST00000611481 PADI6Q6TGC4 694 aa10.38□□□□□ -0.75
LINC00540-201ENST00000611481 PRKD2Q9BZL6 878 aa10.38□□□□□ -0.75
LINC00540-201ENST00000611481 PPP1R18Q6NYC8 613 aa10.37□□□□□ -0.75
LINC00540-201ENST00000611481 SLF2Q8IX21 1173 aa10.37□□□□□ -0.75
LINC00540-201ENST00000611481 ZNF516Q92618 1163 aa10.37□□□□□ -0.75
LINC00540-201ENST00000611481 GFRA3O60609 400 aa10.36□□□□□ -0.75
LINC00540-201ENST00000611481 SLC4A3P48751 1232 aa10.35□□□□□ -0.75
LINC00540-201ENST00000611481 SWT1Q5T5J6 900 aaKnown RBP10.35□□□□□ -0.75
LINC00540-201ENST00000611481 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.35□□□□□ -0.75
LINC00540-201ENST00000611481 V9GY48 417 aaPredicted RBP10.35□□□□□ -0.75
LINC00540-201ENST00000611481 ARHGEF1Q92888 912 aaKnown RBP10.32□□□□□ -0.76
LINC00540-201ENST00000611481 EYA1Q99502 592 aa10.32□□□□□ -0.76
LINC00540-201ENST00000611481 GGCXP38435 758 aa10.3□□□□□ -0.76
LINC00540-201ENST00000611481 COPS2P61201 443 aa10.3□□□□□ -0.76
LINC00540-201ENST00000611481 TRAF7Q6Q0C0 670 aa10.3□□□□□ -0.76
LINC00540-201ENST00000611481 NKX2-3Q8TAU0 364 aa10.3□□□□□ -0.76
LINC00540-201ENST00000611481 NRG2O14511 850 aaPredicted RBP10.29□□□□□ -0.76
LINC00540-201ENST00000611481 PRR14Q9BWN1 585 aa10.29□□□□□ -0.76
LINC00540-201ENST00000611481 MLLT3P42568 568 aaPredicted RBP10.28□□□□□ -0.76
LINC00540-201ENST00000611481 CCDC180Q9P1Z9 1646 aa10.28□□□□□ -0.76
LINC00540-201ENST00000611481 ZPR1O75312 459 aa10.26□□□□□ -0.77
LINC00540-201ENST00000611481 TMUB1Q9BVT8 246 aa10.26□□□□□ -0.77
LINC00540-201ENST00000611481 LCE2BO14633 110 aa10.25□□□□□ -0.77
LINC00540-201ENST00000611481 TSHZ2Q9NRE2 1034 aa10.25□□□□□ -0.77
LINC00540-201ENST00000611481 DNAJB2P25686 324 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms