RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 BRPF3Q9ULD4 1205 aa13.57□□□□□ -0.24
LIG1-220ENST00000601091 KTN1Q86UP2 1357 aaKnown RBP13.57□□□□□ -0.24
LIG1-220ENST00000601091 LAMC3Q9Y6N6 1575 aa13.56□□□□□ -0.24
LIG1-220ENST00000601091 EPRSP07814 1512 aaKnown RBP13.55□□□□□ -0.24
LIG1-220ENST00000601091 FANCIQ9NVI1 1328 aa13.55□□□□□ -0.24
LIG1-220ENST00000601091 PTPRKQ15262 1439 aa13.55□□□□□ -0.24
LIG1-220ENST00000601091 IPO4Q8TEX9 1081 aaKnown RBP13.55□□□□□ -0.24
LIG1-220ENST00000601091 URB2Q14146 1524 aaKnown RBP13.54□□□□□ -0.24
LIG1-220ENST00000601091 HECW1Q76N89 1606 aa13.54□□□□□ -0.24
LIG1-220ENST00000601091 NLRP13Q86W25 1043 aa13.54□□□□□ -0.24
LIG1-220ENST00000601091 KIF15Q9NS87 1388 aa13.54□□□□□ -0.24
LIG1-220ENST00000601091 ARID4BQ4LE39 1312 aaPredicted RBP13.54□□□□□ -0.24
LIG1-220ENST00000601091 RCAN3Q9UKA8 241 aa13.54□□□□□ -0.24
LIG1-220ENST00000601091 PTPN23Q9H3S7 1636 aa13.53□□□□□ -0.24
LIG1-220ENST00000601091 MYBBP1AQ9BQG0 1328 aaKnown RBP13.52□□□□□ -0.25
LIG1-220ENST00000601091 ZNF592Q92610 1267 aa13.52□□□□□ -0.25
LIG1-220ENST00000601091 ANKRD50Q9ULJ7 1429 aa13.51□□□□□ -0.25
LIG1-220ENST00000601091 ROCK1Q13464 1354 aa13.51□□□□□ -0.25
LIG1-220ENST00000601091 DAPK1P53355 1430 aa13.51□□□□□ -0.25
LIG1-220ENST00000601091 PRDM2Q13029 1718 aa13.51□□□□□ -0.25
LIG1-220ENST00000601091 CDK13Q14004 1512 aaKnown RBP13.51□□□□□ -0.25
LIG1-220ENST00000601091 NPM1P06748 294 aaKnown RBP eCLIP13.5□□□□□ -0.25
LIG1-220ENST00000601091 PDE3BQ13370 1112 aa13.5□□□□□ -0.25
LIG1-220ENST00000601091 FTSJ3Q8IY81 847 aaKnown RBP13.49□□□□□ -0.25
LIG1-220ENST00000601091 CFAP43Q8NDM7 1665 aa13.49□□□□□ -0.25
LIG1-220ENST00000601091 ANKRD30BQ9BXX2 1392 aa13.49□□□□□ -0.25
LIG1-220ENST00000601091 C11orf95C9JLR9 678 aaPredicted RBP13.49□□□□□ -0.25
LIG1-220ENST00000601091 DNAJC5BQ9UF47 199 aa13.49□□□□□ -0.25
LIG1-220ENST00000601091 RGS3P49796 1198 aa13.48□□□□□ -0.25
LIG1-220ENST00000601091 IQGAP2Q13576 1575 aa13.48□□□□□ -0.25
LIG1-220ENST00000601091 DDRGK1Q96HY6 314 aa13.48□□□□□ -0.25
LIG1-220ENST00000601091 MRC2Q9UBG0 1479 aa13.48□□□□□ -0.25
LIG1-220ENST00000601091 EFCAB2Q5VUJ9 269 aa13.47□□□□□ -0.25
LIG1-220ENST00000601091 CCDC144AA2RUR9 1427 aa13.47□□□□□ -0.25
LIG1-220ENST00000601091 TROQ12816 1431 aaPredicted RBP13.47□□□□□ -0.25
LIG1-220ENST00000601091 HSP90AA1P07900 732 aaKnown RBP13.47□□□□□ -0.25
LIG1-220ENST00000601091 PRG4Q92954 1404 aaPredicted RBP13.47□□□□□ -0.25
LIG1-220ENST00000601091 SNAPC4Q5SXM2 1469 aa13.47□□□□□ -0.25
LIG1-220ENST00000601091 PTPRGP23470 1445 aa13.46□□□□□ -0.25
LIG1-220ENST00000601091 KIAA1107Q9UPP5 1409 aa13.46□□□□□ -0.25
LIG1-220ENST00000601091 KIAA0586Q9BVV6 1533 aa13.46□□□□□ -0.25
LIG1-220ENST00000601091 IFT140Q96RY7 1462 aa13.46□□□□□ -0.25
LIG1-220ENST00000601091 PPP6R1Q9UPN7 881 aa13.46□□□□□ -0.25
LIG1-220ENST00000601091 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.46□□□□□ -0.25
LIG1-220ENST00000601091 NEFMP07197 916 aa13.46□□□□□ -0.26
LIG1-220ENST00000601091 TCERG1O14776 1098 aaKnown RBP13.45□□□□□ -0.26
LIG1-220ENST00000601091 APPP05067 770 aa13.45□□□□□ -0.26
LIG1-220ENST00000601091 AKNAQ7Z591 1439 aa13.45□□□□□ -0.26
LIG1-220ENST00000601091 THOC2Q8NI27 1593 aaKnown RBP13.45□□□□□ -0.26
LIG1-220ENST00000601091 ABCC5O15440 1437 aa13.44□□□□□ -0.26
LIG1-220ENST00000601091 UPF2Q9HAU5 1272 aaKnown RBP13.44□□□□□ -0.26
LIG1-220ENST00000601091 UGGT2Q9NYU1 1516 aa13.43□□□□□ -0.26
LIG1-220ENST00000601091 PANK3Q9H999 370 aa13.42□□□□□ -0.26
LIG1-220ENST00000601091 CTTNBP2Q8WZ74 1663 aa13.42□□□□□ -0.26
LIG1-220ENST00000601091 PPM1GO15355 546 aaPredicted RBP13.42□□□□□ -0.26
LIG1-220ENST00000601091 IPO9Q96P70 1041 aaKnown RBP13.42□□□□□ -0.26
LIG1-220ENST00000601091 NCOA1Q15788 1441 aa13.42□□□□□ -0.26
LIG1-220ENST00000601091 MAPK8IP2Q13387 824 aaPredicted RBP13.42□□□□□ -0.26
LIG1-220ENST00000601091 RPRD2Q5VT52 1461 aaKnown RBP13.41□□□□□ -0.26
LIG1-220ENST00000601091 SKAP1Q86WV1 359 aa13.41□□□□□ -0.26
LIG1-220ENST00000601091 ARID3AQ99856 593 aa13.41□□□□□ -0.26
LIG1-220ENST00000601091 KANK1Q14678 1352 aa13.41□□□□□ -0.26
LIG1-220ENST00000601091 PTMSP20962 102 aa13.4□□□□□ -0.26
LIG1-220ENST00000601091 RRP1P56182 461 aaKnown RBP13.4□□□□□ -0.26
LIG1-220ENST00000601091 SLC4A3P48751 1232 aa13.4□□□□□ -0.26
LIG1-220ENST00000601091 TEX2Q8IWB9 1127 aa13.4□□□□□ -0.26
LIG1-220ENST00000601091 PNISRQ8TF01 805 aaKnown RBP13.4□□□□□ -0.26
LIG1-220ENST00000601091 BRD4O60885 1362 aaPredicted RBP13.39□□□□□ -0.27
LIG1-220ENST00000601091 GTF2E1P29083 439 aaPredicted RBP13.39□□□□□ -0.27
LIG1-220ENST00000601091 EXOC6Q8TAG9 804 aa13.38□□□□□ -0.27
LIG1-220ENST00000601091 CFAP53Q96M91 514 aa13.38□□□□□ -0.27
LIG1-220ENST00000601091 PLCB2Q00722 1185 aa13.38□□□□□ -0.27
LIG1-220ENST00000601091 C9orf84Q5VXU9 1444 aa13.37□□□□□ -0.27
LIG1-220ENST00000601091 NEUROD2Q15784 382 aa13.37□□□□□ -0.27
LIG1-220ENST00000601091 VGLL3A8MV65 326 aa13.37□□□□□ -0.27
LIG1-220ENST00000601091 TCOF1Q13428 1488 aaKnown RBP13.37□□□□□ -0.27
LIG1-220ENST00000601091 OS9Q13438 667 aaPredicted RBP13.37□□□□□ -0.27
LIG1-220ENST00000601091 SPAG9O60271 1321 aaKnown RBP13.36□□□□□ -0.27
LIG1-220ENST00000601091 RRP9O43818 475 aaKnown RBP13.36□□□□□ -0.27
LIG1-220ENST00000601091 GOLGA2Q08379 1002 aa13.35□□□□□ -0.27
LIG1-220ENST00000601091 SMG6Q86US8 1419 aaKnown RBP13.35□□□□□ -0.27
LIG1-220ENST00000601091 HMGB1P09429 215 aaKnown RBP13.35□□□□□ -0.27
LIG1-220ENST00000601091 FAM193AP78312 1265 aa13.35□□□□□ -0.27
LIG1-220ENST00000601091 STAG3Q9UJ98 1225 aa13.35□□□□□ -0.27
LIG1-220ENST00000601091 TNNT2P45379 298 aaPredicted RBP13.34□□□□□ -0.27
LIG1-220ENST00000601091 CAMSAP2Q08AD1 1489 aa13.34□□□□□ -0.27
LIG1-220ENST00000601091 TMED8Q6PL24 325 aaPredicted RBP13.33□□□□□ -0.27
LIG1-220ENST00000601091 PLCD4Q9BRC7 762 aa13.33□□□□□ -0.27
LIG1-220ENST00000601091 KIF3BO15066 747 aa13.33□□□□□ -0.28
LIG1-220ENST00000601091 PLB1Q6P1J6 1458 aa13.33□□□□□ -0.28
LIG1-220ENST00000601091 PLIN1O60240 522 aa13.32□□□□□ -0.28
LIG1-220ENST00000601091 NBPF1Q3BBV0 1214 aa13.32□□□□□ -0.28
LIG1-220ENST00000601091 FRAT1Q92837 279 aaPredicted RBP13.32□□□□□ -0.28
LIG1-220ENST00000601091 STAC3Q96MF2 364 aa13.32□□□□□ -0.28
LIG1-220ENST00000601091 PSMD1Q99460 953 aa13.32□□□□□ -0.28
LIG1-220ENST00000601091 SYNJ2O15056 1496 aa13.32□□□□□ -0.28
LIG1-220ENST00000601091 GRIN2AQ12879 1464 aa13.32□□□□□ -0.28
LIG1-220ENST00000601091 PDE4AP27815 886 aa13.31□□□□□ -0.28
LIG1-220ENST00000601091 EIF3AQ14152 1382 aaKnown RBP13.31□□□□□ -0.28
LIG1-220ENST00000601091 WASHC2CQ9Y4E1 1318 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms