RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 PBRM1Q86U86 1689 aa13.05□□□□□ -0.32
LIG3-216ENST00000593099 AKNAQ7Z591 1439 aa13.05□□□□□ -0.32
LIG3-216ENST00000593099 NUTM2FA1L443 756 aa13.05□□□□□ -0.32
LIG3-216ENST00000593099 NUP153P49790 1475 aaKnown RBP13.04□□□□□ -0.32
LIG3-216ENST00000593099 MAPK8IP3Q9UPT6 1336 aa13.04□□□□□ -0.32
LIG3-216ENST00000593099 DAXXQ9UER7 740 aaPredicted RBP13.03□□□□□ -0.32
LIG3-216ENST00000593099 THOC2Q8NI27 1593 aaKnown RBP13.03□□□□□ -0.32
LIG3-216ENST00000593099 CAMSAP2Q08AD1 1489 aa13.03□□□□□ -0.32
LIG3-216ENST00000593099 ABCC2Q92887 1545 aa13.03□□□□□ -0.32
LIG3-216ENST00000593099 U2SURPO15042 1029 aaKnown RBP13.02□□□□□ -0.32
LIG3-216ENST00000593099 PLCH2O75038 1416 aa13.02□□□□□ -0.33
LIG3-216ENST00000593099 CEP170Q5SW79 1584 aa13.01□□□□□ -0.33
LIG3-216ENST00000593099 BCL11AQ9H165 835 aa13.01□□□□□ -0.33
LIG3-216ENST00000593099 ROCK1Q13464 1354 aa13.01□□□□□ -0.33
LIG3-216ENST00000593099 HFM1A2PYH4 1435 aa13.01□□□□□ -0.33
LIG3-216ENST00000593099 CTTNBP2Q8WZ74 1663 aa13.01□□□□□ -0.33
LIG3-216ENST00000593099 MIER1Q8N108 512 aa13□□□□□ -0.33
LIG3-216ENST00000593099 PNNQ9H307 717 aaKnown RBP13□□□□□ -0.33
LIG3-216ENST00000593099 EVC2Q86UK5 1308 aa13□□□□□ -0.33
LIG3-216ENST00000593099 ANKLE2Q86XL3 938 aa13□□□□□ -0.33
LIG3-216ENST00000593099 MINK1Q8N4C8 1332 aaPredicted RBP12.99□□□□□ -0.33
LIG3-216ENST00000593099 ST20-MTHFSA0A0A6YYL1 179 aa12.99□□□□□ -0.33
LIG3-216ENST00000593099 PPP6R1Q9UPN7 881 aa12.99□□□□□ -0.33
LIG3-216ENST00000593099 DISP1Q96F81 1524 aa12.99□□□□□ -0.33
LIG3-216ENST00000593099 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.99□□□□□ -0.33
LIG3-216ENST00000593099 ABCC5O15440 1437 aa12.98□□□□□ -0.33
LIG3-216ENST00000593099 CSB-PGBD3P0DP91 1061 aa12.98□□□□□ -0.33
LIG3-216ENST00000593099 GPATCH8Q9UKJ3 1502 aaKnown RBP12.98□□□□□ -0.33
LIG3-216ENST00000593099 ATF3P18847 181 aa12.97□□□□□ -0.33
LIG3-216ENST00000593099 KIAA1107Q9UPP5 1409 aa12.96□□□□□ -0.34
LIG3-216ENST00000593099 NEUROD2Q15784 382 aa12.95□□□□□ -0.34
LIG3-216ENST00000593099 KTN1Q86UP2 1357 aaKnown RBP12.95□□□□□ -0.34
LIG3-216ENST00000593099 PROSER2Q86WR7 435 aaPredicted RBP12.94□□□□□ -0.34
LIG3-216ENST00000593099 DHX29Q7Z478 1369 aaKnown RBP12.94□□□□□ -0.34
LIG3-216ENST00000593099 CENPJQ9HC77 1338 aaPredicted RBP12.94□□□□□ -0.34
LIG3-216ENST00000593099 PTPN23Q9H3S7 1636 aa12.93□□□□□ -0.34
LIG3-216ENST00000593099 CCDC9Q9Y3X0 531 aaKnown RBP12.93□□□□□ -0.34
LIG3-216ENST00000593099 RPGRIP1LQ68CZ1 1315 aa12.93□□□□□ -0.34
LIG3-216ENST00000593099 TMEM132EQ6IEE7 984 aa12.93□□□□□ -0.34
LIG3-216ENST00000593099 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.92□□□□□ -0.34
LIG3-216ENST00000593099 NAIPQ13075 1403 aa12.92□□□□□ -0.34
LIG3-216ENST00000593099 CFAP70Q5T0N1 1121 aa12.92□□□□□ -0.34
LIG3-216ENST00000593099 NCOA1Q15788 1441 aa12.92□□□□□ -0.34
LIG3-216ENST00000593099 USP47Q96K76 1375 aa12.92□□□□□ -0.34
LIG3-216ENST00000593099 CEBPAP49715 358 aaPredicted RBP12.91□□□□□ -0.34
LIG3-216ENST00000593099 ARXQ96QS3 562 aa12.91□□□□□ -0.34
LIG3-216ENST00000593099 ZNF518AQ6AHZ1 1483 aa12.9□□□□□ -0.34
LIG3-216ENST00000593099 AMPHP49418 695 aa12.9□□□□□ -0.34
LIG3-216ENST00000593099 LAS1LQ9Y4W2 734 aaKnown RBP12.9□□□□□ -0.34
LIG3-216ENST00000593099 PSME1Q06323 249 aa12.9□□□□□ -0.34
LIG3-216ENST00000593099 RALBP1Q15311 655 aa12.9□□□□□ -0.34
LIG3-216ENST00000593099 SLC26A8Q96RN1 970 aa12.89□□□□□ -0.35
LIG3-216ENST00000593099 ANKRD30BQ9BXX2 1392 aa12.88□□□□□ -0.35
LIG3-216ENST00000593099 FBXO31Q5XUX0 539 aaPredicted RBP12.88□□□□□ -0.35
LIG3-216ENST00000593099 DNAJC5Q9H3Z4 198 aa12.88□□□□□ -0.35
LIG3-216ENST00000593099 COG3Q96JB2 828 aa12.87□□□□□ -0.35
LIG3-216ENST00000593099 ABCC10Q5T3U5 1492 aa12.87□□□□□ -0.35
LIG3-216ENST00000593099 U2AF1L5P0DN76 240 aaPredicted RBP12.87□□□□□ -0.35
LIG3-216ENST00000593099 U2AF1Q01081 240 aaKnown RBP eCLIP12.87□□□□□ -0.35
LIG3-216ENST00000593099 RTF1Q92541 710 aaKnown RBP12.87□□□□□ -0.35
LIG3-216ENST00000593099 ERBINQ96RT1 1412 aa12.86□□□□□ -0.35
LIG3-216ENST00000593099 SENP3-EIF4A1A0A087X0R7 540 aa12.86□□□□□ -0.35
LIG3-216ENST00000593099 PANK3Q9H999 370 aa12.86□□□□□ -0.35
LIG3-216ENST00000593099 CGNL1Q0VF96 1302 aa12.85□□□□□ -0.35
LIG3-216ENST00000593099 A2MP01023 1474 aa12.85□□□□□ -0.35
LIG3-216ENST00000593099 TRAPPC8Q9Y2L5 1435 aa12.85□□□□□ -0.35
LIG3-216ENST00000593099 IDI1Q13907 227 aa12.84□□□□□ -0.35
LIG3-216ENST00000593099 LTV1Q96GA3 475 aaPredicted RBP12.83□□□□□ -0.35
LIG3-216ENST00000593099 SYCP2Q9BX26 1530 aa12.83□□□□□ -0.36
LIG3-216ENST00000593099 PRAM1Q96QH2 718 aa12.83□□□□□ -0.36
LIG3-216ENST00000593099 MYH16Q9H6N6 1097 aa12.82□□□□□ -0.36
LIG3-216ENST00000593099 DMRT2Q9Y5R5 561 aa12.82□□□□□ -0.36
LIG3-216ENST00000593099 CHD1O14646 1710 aa12.82□□□□□ -0.36
LIG3-216ENST00000593099 UHRF1BP1LA0JNW5 1464 aa12.82□□□□□ -0.36
LIG3-216ENST00000593099 KDM5BQ9UGL1 1544 aa12.82□□□□□ -0.36
LIG3-216ENST00000593099 ITSN2Q9NZM3 1697 aa12.81□□□□□ -0.36
LIG3-216ENST00000593099 EVA1CP58658 441 aa12.81□□□□□ -0.36
LIG3-216ENST00000593099 GTF3C3Q9Y5Q9 886 aa12.81□□□□□ -0.36
LIG3-216ENST00000593099 CCER2I3L3R5 266 aa12.81□□□□□ -0.36
LIG3-216ENST00000593099 TNRQ92752 1358 aa12.81□□□□□ -0.36
LIG3-216ENST00000593099 SAMD9Q5K651 1589 aa12.8□□□□□ -0.36
LIG3-216ENST00000593099 CABP2Q9NPB3 220 aa12.8□□□□□ -0.36
LIG3-216ENST00000593099 ESCO1Q5FWF5 840 aa12.8□□□□□ -0.36
LIG3-216ENST00000593099 NLRP13Q86W25 1043 aa12.8□□□□□ -0.36
LIG3-216ENST00000593099 GPRASP1Q5JY77 1395 aa12.8□□□□□ -0.36
LIG3-216ENST00000593099 NBPF1Q3BBV0 1214 aa12.79□□□□□ -0.36
LIG3-216ENST00000593099 MEX3CQ5U5Q3 659 aaKnown RBP12.79□□□□□ -0.36
LIG3-216ENST00000593099 CALD1Q05682 793 aaKnown RBP12.79□□□□□ -0.36
LIG3-216ENST00000593099 FKBP8Q14318 412 aa12.79□□□□□ -0.36
LIG3-216ENST00000593099 NPHP1O15259 732 aa12.78□□□□□ -0.36
LIG3-216ENST00000593099 DUOX2Q9NRD8 1548 aa12.78□□□□□ -0.36
LIG3-216ENST00000593099 RTEL1-TNFRSF6BF6WH68 1400 aa12.77□□□□□ -0.36
LIG3-216ENST00000593099 NEO1Q92859 1461 aa12.77□□□□□ -0.37
LIG3-216ENST00000593099 NLRP6P59044 892 aa12.75□□□□□ -0.37
LIG3-216ENST00000593099 FTSJ3Q8IY81 847 aaKnown RBP12.75□□□□□ -0.37
LIG3-216ENST00000593099 CCDC136Q96JN2 1154 aa12.74□□□□□ -0.37
LIG3-216ENST00000593099 CHMP4AQ9BY43 222 aa12.74□□□□□ -0.37
LIG3-216ENST00000593099 ATP10AO60312 1499 aa12.74□□□□□ -0.37
LIG3-216ENST00000593099 ABCA8O94911 1581 aa12.73□□□□□ -0.37
LIG3-216ENST00000593099 PMFBP1Q8TBY8 1022 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms