RNA–Protein interactions for RNA: ENST00000590347.5

CIRBP-228, Transcript of cold inducible RNA binding protein, humanhuman

TSL 2

Gene CIRBP, Length 3,117 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIRBP-228ENST00000590347 CFDP1Q9UEE9 299 aaPredicted RBP19.73■□□□□ 0.75
CIRBP-228ENST00000590347 SUPT6HQ7KZ85 1726 aaKnown RBP19.72■□□□□ 0.75
CIRBP-228ENST00000590347 SYNJ2O15056 1496 aa19.72■□□□□ 0.75
CIRBP-228ENST00000590347 NUP153P49790 1475 aaKnown RBP19.72■□□□□ 0.75
CIRBP-228ENST00000590347 SEC24BO95487 1268 aa19.71■□□□□ 0.75
CIRBP-228ENST00000590347 MPHOSPH9Q99550 1183 aa19.71■□□□□ 0.75
CIRBP-228ENST00000590347 HECW1Q76N89 1606 aa19.71■□□□□ 0.75
CIRBP-228ENST00000590347 UGGT2Q9NYU1 1516 aa19.71■□□□□ 0.75
CIRBP-228ENST00000590347 CEP170Q5SW79 1584 aa19.71■□□□□ 0.75
CIRBP-228ENST00000590347 PTPN23Q9H3S7 1636 aa19.69■□□□□ 0.74
CIRBP-228ENST00000590347 HFM1A2PYH4 1435 aa19.69■□□□□ 0.74
CIRBP-228ENST00000590347 KIAA0556O60303 1618 aa19.69■□□□□ 0.74
CIRBP-228ENST00000590347 GOLGA6L3A6NEY3 463 aa19.68■□□□□ 0.74
CIRBP-228ENST00000590347 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.68■□□□□ 0.745e-6■■■□□ 18.7
CIRBP-228ENST00000590347 MAGI1Q96QZ7 1491 aaPredicted RBP19.68■□□□□ 0.74
CIRBP-228ENST00000590347 L1TD1Q5T7N2 865 aaKnown RBP19.68■□□□□ 0.74
CIRBP-228ENST00000590347 ERBB4Q15303 1308 aa19.68■□□□□ 0.74
CIRBP-228ENST00000590347 CLCN1P35523 988 aa19.66■□□□□ 0.74
CIRBP-228ENST00000590347 PLEKHD1A6NEE1 506 aa19.65■□□□□ 0.74
CIRBP-228ENST00000590347 CARMIL2Q6F5E8 1435 aa19.63■□□□□ 0.73
CIRBP-228ENST00000590347 KTN1Q86UP2 1357 aaKnown RBP19.6■□□□□ 0.73
CIRBP-228ENST00000590347 SLC24A1O60721 1099 aa19.6■□□□□ 0.73
CIRBP-228ENST00000590347 SLC4A1APQ9BWU0 796 aaKnown RBP19.6■□□□□ 0.73
CIRBP-228ENST00000590347 DENND4BO75064 1496 aaPredicted RBP19.59■□□□□ 0.73
CIRBP-228ENST00000590347 KDM6BO15054 1643 aa19.59■□□□□ 0.73
CIRBP-228ENST00000590347 ARHGEF11O15085 1522 aa19.58■□□□□ 0.72
CIRBP-228ENST00000590347 CC2D1BQ5T0F9 858 aaKnown RBP19.58■□□□□ 0.72
CIRBP-228ENST00000590347 KDM2BQ8NHM5 1336 aa19.58■□□□□ 0.72
CIRBP-228ENST00000590347 RAPGEF6Q8TEU7 1601 aa19.57■□□□□ 0.72
CIRBP-228ENST00000590347 HNRNPMP52272 730 aaKnown RBP eCLIP19.57■□□□□ 0.72
CIRBP-228ENST00000590347 ESPNB1AK53 854 aa19.57■□□□□ 0.72
CIRBP-228ENST00000590347 PRDM10Q9NQV6 1147 aa19.57■□□□□ 0.72
CIRBP-228ENST00000590347 KDM2AQ9Y2K7 1162 aa19.56■□□□□ 0.72
CIRBP-228ENST00000590347 NUP160Q12769 1436 aa19.56■□□□□ 0.72
CIRBP-228ENST00000590347 CENPQQ7L2Z9 268 aaPredicted RBP19.55■□□□□ 0.72
CIRBP-228ENST00000590347 USP47Q96K76 1375 aa19.55■□□□□ 0.72
CIRBP-228ENST00000590347 ABCC5O15440 1437 aa19.54■□□□□ 0.72
CIRBP-228ENST00000590347 PTPRGP23470 1445 aa19.54■□□□□ 0.72
CIRBP-228ENST00000590347 USP19O94966 1318 aa19.54■□□□□ 0.72
CIRBP-228ENST00000590347 AAMPQ13685 434 aa19.54■□□□□ 0.72
CIRBP-228ENST00000590347 ZHX1Q9UKY1 873 aaPredicted RBP19.54■□□□□ 0.72
CIRBP-228ENST00000590347 FAM13BQ9NYF5 915 aa19.54■□□□□ 0.72
CIRBP-228ENST00000590347 TROQ12816 1431 aaPredicted RBP19.53■□□□□ 0.72
CIRBP-228ENST00000590347 ZBTB7CA1YPR0 619 aa19.53■□□□□ 0.72
CIRBP-228ENST00000590347 MYH16Q9H6N6 1097 aa19.53■□□□□ 0.72
CIRBP-228ENST00000590347 DAPK1P53355 1430 aa19.53■□□□□ 0.72
CIRBP-228ENST00000590347 SPATA31E1Q6ZUB1 1445 aa19.52■□□□□ 0.72
CIRBP-228ENST00000590347 MIA2Q96PC5 1412 aa19.52■□□□□ 0.72
CIRBP-228ENST00000590347 KIAA1211Q6ZU35 1233 aa19.52■□□□□ 0.72
CIRBP-228ENST00000590347 MYBBP1AQ9BQG0 1328 aaKnown RBP19.51■□□□□ 0.71
CIRBP-228ENST00000590347 TRIM44Q96DX7 344 aaPredicted RBP19.51■□□□□ 0.71
CIRBP-228ENST00000590347 PRDM4Q9UKN5 801 aa19.51■□□□□ 0.71
CIRBP-228ENST00000590347 TCOF1Q13428 1488 aaKnown RBP19.5■□□□□ 0.71
CIRBP-228ENST00000590347 BECN1Q14457 450 aa19.49■□□□□ 0.71
CIRBP-228ENST00000590347 KIF14Q15058 1648 aa19.49■□□□□ 0.71
CIRBP-228ENST00000590347 LRPPRCP42704 1394 aaKnown RBP19.49■□□□□ 0.71
CIRBP-228ENST00000590347 ST20-MTHFSA0A0A6YYL1 179 aa19.48■□□□□ 0.71
CIRBP-228ENST00000590347 ATP10BO94823 1461 aa19.48■□□□□ 0.71
CIRBP-228ENST00000590347 IGHDP01880 384 aa19.48■□□□□ 0.71
CIRBP-228ENST00000590347 TRAK2O60296 914 aa19.47■□□□□ 0.71
CIRBP-228ENST00000590347 GPATCH8Q9UKJ3 1502 aaKnown RBP19.47■□□□□ 0.71
CIRBP-228ENST00000590347 FSD2A1L4K1 749 aa19.46■□□□□ 0.71
CIRBP-228ENST00000590347 MCM4P33991 863 aa19.46■□□□□ 0.71
CIRBP-228ENST00000590347 TBC1D2Q9BYX2 928 aa19.46■□□□□ 0.71
CIRBP-228ENST00000590347 CARD11Q9BXL7 1154 aa19.46■□□□□ 0.71
CIRBP-228ENST00000590347 ANTXR1Q9H6X2 564 aa19.45■□□□□ 0.7
CIRBP-228ENST00000590347 GRPEL1Q9HAV7 217 aa19.45■□□□□ 0.7
CIRBP-228ENST00000590347 PDCL3Q9H2J4 239 aa19.45■□□□□ 0.7
CIRBP-228ENST00000590347 CAMSAP2Q08AD1 1489 aa19.44■□□□□ 0.7
CIRBP-228ENST00000590347 TSPY4P0CV99 314 aa19.44■□□□□ 0.7
CIRBP-228ENST00000590347 TSPY10P0CW01 314 aa19.44■□□□□ 0.7
CIRBP-228ENST00000590347 PKD2Q13563 968 aa19.43■□□□□ 0.7
CIRBP-228ENST00000590347 BCORL1Q5H9F3 1711 aa19.42■□□□□ 0.7
CIRBP-228ENST00000590347 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.42■□□□□ 0.71e-19■□□□□ 10
CIRBP-228ENST00000590347 KIF15Q9NS87 1388 aa19.42■□□□□ 0.7
CIRBP-228ENST00000590347 BCAR3O75815 825 aa19.42■□□□□ 0.7
CIRBP-228ENST00000590347 PDE3BQ13370 1112 aa19.42■□□□□ 0.7
CIRBP-228ENST00000590347 GAS2L3Q86XJ1 694 aa19.42■□□□□ 0.7
CIRBP-228ENST00000590347 FGD1P98174 961 aa19.41■□□□□ 0.7
CIRBP-228ENST00000590347 NLRP13Q86W25 1043 aa19.4■□□□□ 0.7
CIRBP-228ENST00000590347 BRD4O60885 1362 aaPredicted RBP19.4■□□□□ 0.7
CIRBP-228ENST00000590347 ERCC6L2Q5T890 1561 aa19.4■□□□□ 0.7
CIRBP-228ENST00000590347 MRE11P49959 708 aa19.39■□□□□ 0.69
CIRBP-228ENST00000590347 FOXD4L1Q9NU39 408 aa19.38■□□□□ 0.69
CIRBP-228ENST00000590347 R3HCC1Q9Y3T6 440 aaKnown RBP19.38■□□□□ 0.69
CIRBP-228ENST00000590347 ANKRD30BQ9BXX2 1392 aa19.38■□□□□ 0.69
CIRBP-228ENST00000590347 AMER1Q5JTC6 1135 aaPredicted RBP19.38■□□□□ 0.69
CIRBP-228ENST00000590347 RIPK4P57078 832 aa19.37■□□□□ 0.69
CIRBP-228ENST00000590347 CALD1Q05682 793 aaKnown RBP19.37■□□□□ 0.69
CIRBP-228ENST00000590347 ADAMTS8Q9UP79 889 aa19.37■□□□□ 0.69
CIRBP-228ENST00000590347 RALBP1Q15311 655 aa19.36■□□□□ 0.69
CIRBP-228ENST00000590347 CCDC146Q8IYE0 955 aa19.36■□□□□ 0.69
CIRBP-228ENST00000590347 TEX14Q8IWB6 1497 aa19.34■□□□□ 0.69
CIRBP-228ENST00000590347 NUP155O75694 1391 aa19.34■□□□□ 0.69
CIRBP-228ENST00000590347 TPM2P07951 284 aa19.34■□□□□ 0.69
CIRBP-228ENST00000590347 PDE4CQ08493 712 aa19.34■□□□□ 0.69
CIRBP-228ENST00000590347 COG6Q9Y2V7 657 aa19.34■□□□□ 0.69
CIRBP-228ENST00000590347 PANK1Q8TE04 598 aa19.33■□□□□ 0.69
CIRBP-228ENST00000590347 ANKRD30AQ9BXX3 1397 aa19.33■□□□□ 0.68
CIRBP-228ENST00000590347 CHD1O14646 1710 aa19.32■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms