RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 COL9A1P20849 921 aa11.75□□□□□ -0.53
SMCHD1-209ENST00000583441 TSR3Q9UJK0 312 aaKnown RBP11.74□□□□□ -0.53
SMCHD1-209ENST00000583441 CRISPLD2Q9H0B8 497 aa11.72□□□□□ -0.53
SMCHD1-209ENST00000583441 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.72□□□□□ -0.53
SMCHD1-209ENST00000583441 SEPT9Q9UHD8 586 aaPredicted RBP11.72□□□□□ -0.53
SMCHD1-209ENST00000583441 HPS5Q9UPZ3 1129 aa11.72□□□□□ -0.53
SMCHD1-209ENST00000583441 MAP3K9P80192 1104 aa11.7□□□□□ -0.54
SMCHD1-209ENST00000583441 V9GY48 417 aaPredicted RBP11.7□□□□□ -0.54
SMCHD1-209ENST00000583441 ONECUT3O60422 494 aaPredicted RBP11.69□□□□□ -0.54
SMCHD1-209ENST00000583441 LRCH3Q96II8 777 aa11.69□□□□□ -0.54
SMCHD1-209ENST00000583441 PCDHGA10Q9Y5H3 936 aa11.69□□□□□ -0.54
SMCHD1-209ENST00000583441 PDZRN3Q9UPQ7 1066 aa11.67□□□□□ -0.54
SMCHD1-209ENST00000583441 FAM98CQ17RN3 349 aaKnown RBP11.66□□□□□ -0.54
SMCHD1-209ENST00000583441 FBXW7Q969H0 707 aa11.66□□□□□ -0.54
SMCHD1-209ENST00000583441 PDE4AP27815 886 aa11.65□□□□□ -0.54
SMCHD1-209ENST00000583441 TYW1BQ6NUM6 668 aa11.65□□□□□ -0.54
SMCHD1-209ENST00000583441 PKD2Q13563 968 aa11.63□□□□□ -0.55
SMCHD1-209ENST00000583441 PPP1R18Q6NYC8 613 aa11.63□□□□□ -0.55
SMCHD1-209ENST00000583441 PPP4CP60510 307 aa11.62□□□□□ -0.55
SMCHD1-209ENST00000583441 PHF14O94880 888 aa11.6□□□□□ -0.55
SMCHD1-209ENST00000583441 TJAP1Q5JTD0 557 aa11.6□□□□□ -0.55
SMCHD1-209ENST00000583441 TRIM6-TRIM34B2RNG4 842 aa11.59□□□□□ -0.55
SMCHD1-209ENST00000583441 HS6ST3Q8IZP7 471 aa11.59□□□□□ -0.55
SMCHD1-209ENST00000583441 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.58□□□□□ -0.56
SMCHD1-209ENST00000583441 NCKAP5LQ9HCH0 1330 aa11.57□□□□□ -0.56
SMCHD1-209ENST00000583441 IL21Q9HBE4 155 aa11.56□□□□□ -0.56
SMCHD1-209ENST00000583441 C6orf132Q5T0Z8 1188 aa11.55□□□□□ -0.56
SMCHD1-209ENST00000583441 RYDENQ9NUL5 291 aaKnown RBP11.55□□□□□ -0.56
SMCHD1-209ENST00000583441 DDX27Q96GQ7 796 aaKnown RBP11.54□□□□□ -0.56
SMCHD1-209ENST00000583441 MTRQ99707 1265 aa11.54□□□□□ -0.56
SMCHD1-209ENST00000583441 LARP6Q9BRS8 491 aaKnown RBP11.53□□□□□ -0.56
SMCHD1-209ENST00000583441 EPAS1Q99814 870 aa11.5□□□□□ -0.57
SMCHD1-209ENST00000583441 PACS2Q86VP3 889 aa11.48□□□□□ -0.57
SMCHD1-209ENST00000583441 EMILIN3Q9NT22 766 aa11.48□□□□□ -0.57
SMCHD1-209ENST00000583441 GGCXP38435 758 aa11.47□□□□□ -0.57
SMCHD1-209ENST00000583441 CHGAP10645 457 aaKnown RBP11.46□□□□□ -0.57
SMCHD1-209ENST00000583441 PKDCCQ504Y2 493 aa11.46□□□□□ -0.57
SMCHD1-209ENST00000583441 ZNF516Q92618 1163 aa11.46□□□□□ -0.57
SMCHD1-209ENST00000583441 SAMD7Q7Z3H4 446 aa11.44□□□□□ -0.58
SMCHD1-209ENST00000583441 RBM33Q96EV2 1170 aaKnown RBP11.44□□□□□ -0.58
SMCHD1-209ENST00000583441 TREML4Q6UXN2 200 aa11.43□□□□□ -0.58
SMCHD1-209ENST00000583441 POTECB2RU33 542 aa11.42□□□□□ -0.58
SMCHD1-209ENST00000583441 MYT1Q01538 1121 aa11.42□□□□□ -0.58
SMCHD1-209ENST00000583441 NKX1-1Q15270 411 aaPredicted RBP11.41□□□□□ -0.58
SMCHD1-209ENST00000583441 DGAT1O75907 488 aa11.4□□□□□ -0.58
SMCHD1-209ENST00000583441 MFSD10Q14728 455 aa11.4□□□□□ -0.58
SMCHD1-209ENST00000583441 NKX2-3Q8TAU0 364 aa11.4□□□□□ -0.58
SMCHD1-209ENST00000583441 TSKSQ9UJT2 592 aa11.4□□□□□ -0.58
SMCHD1-209ENST00000583441 TMUB1Q9BVT8 246 aa11.37□□□□□ -0.59
SMCHD1-209ENST00000583441 DNAJC5Q9H3Z4 198 aa11.36□□□□□ -0.59
SMCHD1-209ENST00000583441 SMAPO00193 183 aa11.35□□□□□ -0.59
SMCHD1-209ENST00000583441 TRIM67Q6ZTA4 783 aa11.35□□□□□ -0.59
SMCHD1-209ENST00000583441 RNF40O75150 1001 aa11.34□□□□□ -0.59
SMCHD1-209ENST00000583441 HDGFP51858 240 aaKnown RBP11.33□□□□□ -0.6
SMCHD1-209ENST00000583441 SLC19A1P41440 591 aa11.32□□□□□ -0.6
SMCHD1-209ENST00000583441 APLP1P51693 650 aa11.32□□□□□ -0.6
SMCHD1-209ENST00000583441 LCE2AQ5TA79 106 aaPredicted RBP11.32□□□□□ -0.6
SMCHD1-209ENST00000583441 DDX12PQ92771 950 aa11.3□□□□□ -0.6
SMCHD1-209ENST00000583441 FAM187AA6NFU0 413 aa11.29□□□□□ -0.6
SMCHD1-209ENST00000583441 MAP3K7O43318 606 aa11.29□□□□□ -0.6
SMCHD1-209ENST00000583441 COPS2P61201 443 aa11.29□□□□□ -0.6
SMCHD1-209ENST00000583441 STK17AQ9UEE5 414 aa11.29□□□□□ -0.6
SMCHD1-209ENST00000583441 CDCA7LQ96GN5 454 aa11.28□□□□□ -0.6
SMCHD1-209ENST00000583441 PRR20EP86478 221 aa11.27□□□□□ -0.61
SMCHD1-209ENST00000583441 PRR20CP86479 221 aa11.27□□□□□ -0.61
SMCHD1-209ENST00000583441 PRR20DP86480 221 aa11.27□□□□□ -0.61
SMCHD1-209ENST00000583441 PRR20BP86481 221 aa11.27□□□□□ -0.61
SMCHD1-209ENST00000583441 PRR20AP86496 221 aa11.27□□□□□ -0.61
SMCHD1-209ENST00000583441 TSR1Q2NL82 804 aaKnown RBP11.27□□□□□ -0.61
SMCHD1-209ENST00000583441 ZNF598Q86UK7 904 aaKnown RBP11.26□□□□□ -0.61
SMCHD1-209ENST00000583441 NECTIN2Q92692 538 aa11.26□□□□□ -0.61
SMCHD1-209ENST00000583441 PNMA3Q9UL41 463 aa11.26□□□□□ -0.61
SMCHD1-209ENST00000583441 NBPF26B4DH59 902 aa11.25□□□□□ -0.61
SMCHD1-209ENST00000583441 DPYSL4O14531 572 aa11.25□□□□□ -0.61
SMCHD1-209ENST00000583441 EN1Q05925 392 aaPredicted RBP11.25□□□□□ -0.61
SMCHD1-209ENST00000583441 SPRYD7Q5W111 196 aa11.25□□□□□ -0.61
SMCHD1-209ENST00000583441 TATDN2Q93075 761 aa11.25□□□□□ -0.61
SMCHD1-209ENST00000583441 WFS1O76024 890 aa11.24□□□□□ -0.61
SMCHD1-209ENST00000583441 PRSS12P56730 875 aa11.24□□□□□ -0.61
SMCHD1-209ENST00000583441 NBR1Q14596 966 aa11.24□□□□□ -0.61
SMCHD1-209ENST00000583441 ZPR1O75312 459 aa11.23□□□□□ -0.61
SMCHD1-209ENST00000583441 RNF223E7ERA6 249 aa11.22□□□□□ -0.61
SMCHD1-209ENST00000583441 ST8SIA5O15466 376 aa11.21□□□□□ -0.61
SMCHD1-209ENST00000583441 FAM198AQ9UFP1 575 aa11.21□□□□□ -0.61
SMCHD1-209ENST00000583441 INSM1Q01101 510 aaPredicted RBP11.2□□□□□ -0.62
SMCHD1-209ENST00000583441 AAASQ9NRG9 546 aa11.2□□□□□ -0.62
SMCHD1-209ENST00000583441 ZNF697Q5TEC3 545 aa11.19□□□□□ -0.62
SMCHD1-209ENST00000583441 CERKQ8TCT0 537 aa11.19□□□□□ -0.62
SMCHD1-209ENST00000583441 EMID1Q96A84 441 aaPredicted RBP11.19□□□□□ -0.62
SMCHD1-209ENST00000583441 C3orf80F5H4A9 247 aa11.18□□□□□ -0.62
SMCHD1-209ENST00000583441 TNFRSF10AO00220 468 aa11.18□□□□□ -0.62
SMCHD1-209ENST00000583441 GTPBP6O43824 516 aaPredicted RBP11.17□□□□□ -0.62
SMCHD1-209ENST00000583441 CAMK2BQ13554 666 aa11.16□□□□□ -0.62
SMCHD1-209ENST00000583441 NUDT18Q6ZVK8 323 aa11.16□□□□□ -0.62
SMCHD1-209ENST00000583441 SLF2Q8IX21 1173 aa11.15□□□□□ -0.62
SMCHD1-209ENST00000583441 GDF9O60383 454 aa11.14□□□□□ -0.63
SMCHD1-209ENST00000583441 ANKLE1Q8NAG6 615 aa11.14□□□□□ -0.63
SMCHD1-209ENST00000583441 WIPF1O43516 503 aa11.12□□□□□ -0.63
SMCHD1-209ENST00000583441 SLC4A3P48751 1232 aa11.12□□□□□ -0.63
SMCHD1-209ENST00000583441 LIAT1Q6ZQX7 453 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms