RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 GRXCR2A6NFK2 248 aa8.24□□□□□ -1.09
NUP88-209ENST00000574855 TK2O00142 265 aa8.24□□□□□ -1.09
NUP88-209ENST00000574855 NBR1Q14596 966 aa8.23□□□□□ -1.09
NUP88-209ENST00000574855 ADGRD1Q6QNK2 874 aa8.23□□□□□ -1.09
NUP88-209ENST00000574855 C6orf132Q5T0Z8 1188 aa8.22□□□□□ -1.09
NUP88-209ENST00000574855 RBM33Q96EV2 1170 aaKnown RBP8.22□□□□□ -1.09
NUP88-209ENST00000574855 SLC4A5Q9BY07 1137 aa8.21□□□□□ -1.1
NUP88-209ENST00000574855 MAP3K7O43318 606 aa8.2□□□□□ -1.1
NUP88-209ENST00000574855 EN1Q05925 392 aaPredicted RBP8.2□□□□□ -1.1
NUP88-209ENST00000574855 STAC3Q96MF2 364 aa8.2□□□□□ -1.1
NUP88-209ENST00000574855 MYT1LQ9UL68 1186 aa8.2□□□□□ -1.1
NUP88-209ENST00000574855 PPP1R3GB7ZBB8 358 aa8.19□□□□□ -1.1
NUP88-209ENST00000574855 VPS9D1Q9Y2B5 631 aa8.19□□□□□ -1.1
NUP88-209ENST00000574855 OSBPP22059 807 aa8.18□□□□□ -1.1
NUP88-209ENST00000574855 ZBED2Q9BTP6 218 aa8.18□□□□□ -1.1
NUP88-209ENST00000574855 HRO43593 1189 aa8.17□□□□□ -1.1
NUP88-209ENST00000574855 COL9A1P20849 921 aa8.17□□□□□ -1.1
NUP88-209ENST00000574855 MLLT3P42568 568 aaPredicted RBP8.16□□□□□ -1.1
NUP88-209ENST00000574855 SEMA3EO15041 775 aa8.15□□□□□ -1.1
NUP88-209ENST00000574855 TSR1Q2NL82 804 aaKnown RBP8.15□□□□□ -1.1
NUP88-209ENST00000574855 RNF166Q96A37 237 aaPredicted RBP8.15□□□□□ -1.1
NUP88-209ENST00000574855 CERKQ8TCT0 537 aa8.14□□□□□ -1.11
NUP88-209ENST00000574855 PRIM1P49642 420 aaKnown RBP8.13□□□□□ -1.11
NUP88-209ENST00000574855 RABGEF1Q9UJ41 708 aa8.13□□□□□ -1.11
NUP88-209ENST00000574855 BHMG1C9JSJ3 638 aaPredicted RBP8.12□□□□□ -1.11
NUP88-209ENST00000574855 ONECUT3O60422 494 aaPredicted RBP8.12□□□□□ -1.11
NUP88-209ENST00000574855 PROX2Q3B8N5 592 aa8.12□□□□□ -1.11
NUP88-209ENST00000574855 SMYD5Q6GMV2 418 aa8.12□□□□□ -1.11
NUP88-209ENST00000574855 NBPF3Q9H094 633 aa8.12□□□□□ -1.11
NUP88-209ENST00000574855 MRPL50Q8N5N7 158 aaKnown RBP8.11□□□□□ -1.11
NUP88-209ENST00000574855 TRIM6-TRIM34B2RNG4 842 aa8.1□□□□□ -1.11
NUP88-209ENST00000574855 KIAA1468Q9P260 1216 aa8.1□□□□□ -1.11
NUP88-209ENST00000574855 TESPA1A2RU30 521 aaPredicted RBP8.09□□□□□ -1.11
NUP88-209ENST00000574855 GOLGA8CPA6NN73 597 aa8.09□□□□□ -1.11
NUP88-209ENST00000574855 PACS2Q86VP3 889 aa8.09□□□□□ -1.11
NUP88-209ENST00000574855 PRSS12P56730 875 aa8.08□□□□□ -1.12
NUP88-209ENST00000574855 CDCA7LQ96GN5 454 aa8.08□□□□□ -1.12
NUP88-209ENST00000574855 CDHR5Q9HBB8 845 aa8.07□□□□□ -1.12
NUP88-209ENST00000574855 NUTM2FA1L443 756 aa8.06□□□□□ -1.12
NUP88-209ENST00000574855 LAPTM4BQ86VI4 370 aa8.06□□□□□ -1.12
NUP88-209ENST00000574855 KCTD12Q96CX2 325 aaKnown RBP8.06□□□□□ -1.12
NUP88-209ENST00000574855 NPDC1Q9NQX5 325 aaPredicted RBP8.06□□□□□ -1.12
NUP88-209ENST00000574855 TSKSQ9UJT2 592 aa8.06□□□□□ -1.12
NUP88-209ENST00000574855 RBM27Q9P2N5 1060 aaKnown RBP8.05□□□□□ -1.12
NUP88-209ENST00000574855 WNT2BQ93097 391 aa8.04□□□□□ -1.12
NUP88-209ENST00000574855 HCSTQ9UBK5 93 aa8.04□□□□□ -1.12
NUP88-209ENST00000574855 TULP1O00294 542 aaPredicted RBP8.03□□□□□ -1.12
NUP88-209ENST00000574855 PTGDRQ13258 359 aa8.03□□□□□ -1.12
NUP88-209ENST00000574855 FAM98CQ17RN3 349 aaKnown RBP8.02□□□□□ -1.13
NUP88-209ENST00000574855 RBM26Q5T8P6 1007 aaKnown RBP8.02□□□□□ -1.13
NUP88-209ENST00000574855 SEPT9Q9UHD8 586 aaPredicted RBP8.02□□□□□ -1.13
NUP88-209ENST00000574855 NBPF26B4DH59 902 aa8.01□□□□□ -1.13
NUP88-209ENST00000574855 ANKK1Q8NFD2 765 aa8.01□□□□□ -1.13
NUP88-209ENST00000574855 TATDN2Q93075 761 aa8.01□□□□□ -1.13
NUP88-209ENST00000574855 ZFRQ96KR1 1074 aaKnown RBP8.01□□□□□ -1.13
NUP88-209ENST00000574855 FCHSD2O94868 740 aa8□□□□□ -1.13
NUP88-209ENST00000574855 PADI6Q6TGC4 694 aa8□□□□□ -1.13
NUP88-209ENST00000574855 TTC13Q8NBP0 860 aa8□□□□□ -1.13
NUP88-209ENST00000574855 FAM198AQ9UFP1 575 aa8□□□□□ -1.13
NUP88-209ENST00000574855 PNMA3Q9UL41 463 aa8□□□□□ -1.13
NUP88-209ENST00000574855 PTPN5P54829 565 aa7.99□□□□□ -1.13
NUP88-209ENST00000574855 THSD4Q6ZMP0 1018 aa7.99□□□□□ -1.13
NUP88-209ENST00000574855 NUDT18Q6ZVK8 323 aa7.98□□□□□ -1.13
NUP88-209ENST00000574855 SMAPO00193 183 aa7.97□□□□□ -1.13
NUP88-209ENST00000574855 HDGFP51858 240 aaKnown RBP7.97□□□□□ -1.13
NUP88-209ENST00000574855 HIC1Q14526 733 aa7.97□□□□□ -1.13
NUP88-209ENST00000574855 SOWAHBA6NEL2 793 aa7.96□□□□□ -1.14
NUP88-209ENST00000574855 C3orf80F5H4A9 247 aa7.95□□□□□ -1.14
NUP88-209ENST00000574855 SLC24A1O60721 1099 aa7.95□□□□□ -1.14
NUP88-209ENST00000574855 LRCH3Q96II8 777 aa7.95□□□□□ -1.14
NUP88-209ENST00000574855 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.95□□□□□ -1.14
NUP88-209ENST00000574855 BCAMP50895 628 aa7.94□□□□□ -1.14
NUP88-209ENST00000574855 GPIHBP1Q8IV16 184 aa7.94□□□□□ -1.14
NUP88-209ENST00000574855 GNPATO15228 680 aa7.93□□□□□ -1.14
NUP88-209ENST00000574855 RBM46Q8TBY0 533 aaKnown RBP7.93□□□□□ -1.14
NUP88-209ENST00000574855 EYA1Q99502 592 aa7.93□□□□□ -1.14
NUP88-209ENST00000574855 SAMD7Q7Z3H4 446 aa7.92□□□□□ -1.14
NUP88-209ENST00000574855 TSR3Q9UJK0 312 aaKnown RBP7.92□□□□□ -1.14
NUP88-209ENST00000574855 ADGRG1Q9Y653 693 aa7.92□□□□□ -1.14
NUP88-209ENST00000574855 OATP04181 439 aa7.91□□□□□ -1.14
NUP88-209ENST00000574855 NYAP1Q6ZVC0 841 aa7.91□□□□□ -1.14
NUP88-209ENST00000574855 GPR37O15354 613 aa7.9□□□□□ -1.14
NUP88-209ENST00000574855 SLC4A3P48751 1232 aa7.9□□□□□ -1.14
NUP88-209ENST00000574855 PPP4CP60510 307 aa7.9□□□□□ -1.14
NUP88-209ENST00000574855 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.9□□□□□ -1.14
NUP88-209ENST00000574855 HPS5Q9UPZ3 1129 aa7.9□□□□□ -1.14
NUP88-209ENST00000574855 FECHP22830 423 aa7.89□□□□□ -1.15
NUP88-209ENST00000574855 FAM161AQ3B820 660 aa7.89□□□□□ -1.15
NUP88-209ENST00000574855 WBP1LQ9NX94 342 aa7.89□□□□□ -1.15
NUP88-209ENST00000574855 DNAJB2P25686 324 aa7.88□□□□□ -1.15
NUP88-209ENST00000574855 RNF40O75150 1001 aa7.87□□□□□ -1.15
NUP88-209ENST00000574855 SWT1Q5T5J6 900 aaKnown RBP7.87□□□□□ -1.15
NUP88-209ENST00000574855 SLF2Q8IX21 1173 aa7.87□□□□□ -1.15
NUP88-209ENST00000574855 NECTIN2Q92692 538 aa7.87□□□□□ -1.15
NUP88-209ENST00000574855 PLA2G2EQ9NZK7 142 aa7.87□□□□□ -1.15
NUP88-209ENST00000574855 RCCD1A6NED2 376 aa7.86□□□□□ -1.15
NUP88-209ENST00000574855 LMOD2Q6P5Q4 547 aa7.86□□□□□ -1.15
NUP88-209ENST00000574855 PXYLP1Q8TE99 480 aa7.86□□□□□ -1.15
NUP88-209ENST00000574855 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.85□□□□□ -1.15
NUP88-209ENST00000574855 METTL3Q86U44 580 aaKnown RBP7.85□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 172.7 ms