RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 CARD11Q9BXL7 1154 aa16.55■□□□□ 0.24
CIITA-209ENST00000573309 WDR7Q9Y4E6 1490 aa16.55■□□□□ 0.24
CIITA-209ENST00000573309 FANCAO15360 1455 aa16.54■□□□□ 0.24
CIITA-209ENST00000573309 NBPF1Q3BBV0 1214 aa16.54■□□□□ 0.24
CIITA-209ENST00000573309 RSPH4AQ5TD94 716 aa16.54■□□□□ 0.24
CIITA-209ENST00000573309 WASHC2AQ641Q2 1341 aa16.54■□□□□ 0.24
CIITA-209ENST00000573309 KIAA1107Q9UPP5 1409 aa16.53■□□□□ 0.24
CIITA-209ENST00000573309 GCC2Q8IWJ2 1684 aa16.52■□□□□ 0.24
CIITA-209ENST00000573309 CD109Q6YHK3 1445 aa16.51■□□□□ 0.23
CIITA-209ENST00000573309 ADGRL1O94910 1474 aa16.49■□□□□ 0.23
CIITA-209ENST00000573309 PPP4R2Q9NY27 417 aa16.49■□□□□ 0.23
CIITA-209ENST00000573309 ST20-MTHFSA0A0A6YYL1 179 aa16.48■□□□□ 0.23
CIITA-209ENST00000573309 B4GALNT3Q6L9W6 998 aa16.48■□□□□ 0.23
CIITA-209ENST00000573309 PREX2Q70Z35 1606 aa16.47■□□□□ 0.23
CIITA-209ENST00000573309 RPRD2Q5VT52 1461 aaKnown RBP16.47■□□□□ 0.23
CIITA-209ENST00000573309 NBR1Q14596 966 aa16.46■□□□□ 0.23
CIITA-209ENST00000573309 PAK3O75914 559 aaPredicted RBP16.46■□□□□ 0.22
CIITA-209ENST00000573309 CCDC184Q52MB2 194 aa16.46■□□□□ 0.22
CIITA-209ENST00000573309 ADGRL2O95490 1459 aa16.46■□□□□ 0.22
CIITA-209ENST00000573309 CCDC144AA2RUR9 1427 aa16.45■□□□□ 0.22
CIITA-209ENST00000573309 UHRF1BP1LA0JNW5 1464 aa16.45■□□□□ 0.22
CIITA-209ENST00000573309 FAM9BQ8IZU0 186 aa16.44■□□□□ 0.22
CIITA-209ENST00000573309 MYO5CQ9NQX4 1742 aa16.43■□□□□ 0.22
CIITA-209ENST00000573309 ERICH6BQ5W0A0 696 aa16.42■□□□□ 0.22
CIITA-209ENST00000573309 NOP58Q9Y2X3 529 aaKnown RBP16.41■□□□□ 0.22
CIITA-209ENST00000573309 FAM135AQ9P2D6 1515 aa16.41■□□□□ 0.22
CIITA-209ENST00000573309 TRHP20396 242 aaPredicted RBP16.41■□□□□ 0.22
CIITA-209ENST00000573309 KIF7Q2M1P5 1343 aa16.41■□□□□ 0.22
CIITA-209ENST00000573309 WASHC2CQ9Y4E1 1318 aa16.41■□□□□ 0.22
CIITA-209ENST00000573309 ANO8Q9HCE9 1232 aaPredicted RBP16.4■□□□□ 0.22
CIITA-209ENST00000573309 USP47Q96K76 1375 aa16.4■□□□□ 0.22
CIITA-209ENST00000573309 ROCK2O75116 1388 aaKnown RBP16.4■□□□□ 0.22
CIITA-209ENST00000573309 TEX14Q8IWB6 1497 aa16.38■□□□□ 0.21
CIITA-209ENST00000573309 SHANK2Q9UPX8 1470 aa16.38■□□□□ 0.21
CIITA-209ENST00000573309 ADGBQ8N7X0 1667 aa16.38■□□□□ 0.21
CIITA-209ENST00000573309 CROCC2H7BZ55 1655 aa16.37■□□□□ 0.21
CIITA-209ENST00000573309 CFAP65Q6ZU64 1925 aaKnown RBP16.37■□□□□ 0.21
CIITA-209ENST00000573309 SAFB2Q14151 953 aaKnown RBP eCLIP16.36■□□□□ 0.21
CIITA-209ENST00000573309 ABCC1P33527 1531 aa16.35■□□□□ 0.21
CIITA-209ENST00000573309 PLA2R1Q13018 1463 aa16.35■□□□□ 0.21
CIITA-209ENST00000573309 MRS2Q9HD23 443 aa16.35■□□□□ 0.21
CIITA-209ENST00000573309 SALL2Q9Y467 1007 aaPredicted RBP16.35■□□□□ 0.21
CIITA-209ENST00000573309 ARHGEF5Q12774 1597 aa16.35■□□□□ 0.21
CIITA-209ENST00000573309 ARID4BQ4LE39 1312 aaPredicted RBP16.34■□□□□ 0.21
CIITA-209ENST00000573309 CFAP70Q5T0N1 1121 aa16.33■□□□□ 0.2
CIITA-209ENST00000573309 FBXO31Q5XUX0 539 aaPredicted RBP16.32■□□□□ 0.2
CIITA-209ENST00000573309 KANK1Q14678 1352 aa16.32■□□□□ 0.2
CIITA-209ENST00000573309 CCDC7Q96M83 1385 aa16.32■□□□□ 0.2
CIITA-209ENST00000573309 TMEM132EQ6IEE7 984 aa16.32■□□□□ 0.2
CIITA-209ENST00000573309 UGGT1Q9NYU2 1555 aa16.3■□□□□ 0.2
CIITA-209ENST00000573309 CC2D1BQ5T0F9 858 aaKnown RBP16.29■□□□□ 0.2
CIITA-209ENST00000573309 DHX29Q7Z478 1369 aaKnown RBP16.29■□□□□ 0.2
CIITA-209ENST00000573309 YEATS2Q9ULM3 1422 aa16.29■□□□□ 0.2
CIITA-209ENST00000573309 DUOX2Q9NRD8 1548 aa16.29■□□□□ 0.2
CIITA-209ENST00000573309 TSPOAP1O95153 1857 aa16.28■□□□□ 0.2
CIITA-209ENST00000573309 ATP7AQ04656 1500 aa16.28■□□□□ 0.2
CIITA-209ENST00000573309 STK26Q9P289 416 aa16.27■□□□□ 0.2
CIITA-209ENST00000573309 ADGRF5Q8IZF2 1346 aa16.27■□□□□ 0.2
CIITA-209ENST00000573309 STAG3Q9UJ98 1225 aa16.27■□□□□ 0.19
CIITA-209ENST00000573309 ZBED9Q6R2W3 1325 aa16.26■□□□□ 0.19
CIITA-209ENST00000573309 TRAK1Q9UPV9 953 aa16.26■□□□□ 0.19
CIITA-209ENST00000573309 A2MP01023 1474 aa16.26■□□□□ 0.19
CIITA-209ENST00000573309 PRKRIP1Q9H875 184 aaPredicted RBP16.26■□□□□ 0.19
CIITA-209ENST00000573309 RIMBP3CA6NJZ7 1639 aa16.25■□□□□ 0.19
CIITA-209ENST00000573309 RIMBP3BA6NNM3 1639 aa16.25■□□□□ 0.19
CIITA-209ENST00000573309 RIMBP3Q9UFD9 1639 aa16.25■□□□□ 0.19
CIITA-209ENST00000573309 ZFYVE16Q7Z3T8 1539 aa16.25■□□□□ 0.19
CIITA-209ENST00000573309 CNTLNQ9NXG0 1405 aa16.24■□□□□ 0.19
CIITA-209ENST00000573309 IL27Q8NEV9 243 aa16.24■□□□□ 0.19
CIITA-209ENST00000573309 IPO9Q96P70 1041 aaKnown RBP16.24■□□□□ 0.19
CIITA-209ENST00000573309 ERBINQ96RT1 1412 aa16.23■□□□□ 0.19
CIITA-209ENST00000573309 ABCA9Q8IUA7 1624 aa16.22■□□□□ 0.19
CIITA-209ENST00000573309 ZNF518AQ6AHZ1 1483 aa16.21■□□□□ 0.19
CIITA-209ENST00000573309 POGZQ7Z3K3 1410 aa16.2■□□□□ 0.18
CIITA-209ENST00000573309 ANP32AP39687 249 aaKnown RBP16.19■□□□□ 0.18
CIITA-209ENST00000573309 RTN4Q9NQC3 1192 aaKnown RBP16.19■□□□□ 0.18
CIITA-209ENST00000573309 IDI1Q13907 227 aa16.19■□□□□ 0.18
CIITA-209ENST00000573309 RTL5Q5HYW3 569 aaPredicted RBP16.19■□□□□ 0.18
CIITA-209ENST00000573309 ESF1Q9H501 851 aaKnown RBP16.19■□□□□ 0.18
CIITA-209ENST00000573309 ZBTB47Q9UFB7 747 aaPredicted RBP16.19■□□□□ 0.18
CIITA-209ENST00000573309 TMC1Q8TDI8 760 aa16.18■□□□□ 0.18
CIITA-209ENST00000573309 TNNT2P45379 298 aaPredicted RBP16.18■□□□□ 0.18
CIITA-209ENST00000573309 CEBPAP49715 358 aaPredicted RBP16.18■□□□□ 0.18
CIITA-209ENST00000573309 RTEL1-TNFRSF6BF6WH68 1400 aa16.17■□□□□ 0.18
CIITA-209ENST00000573309 SPATA31E1Q6ZUB1 1445 aa16.17■□□□□ 0.18
CIITA-209ENST00000573309 CCDC136Q96JN2 1154 aa16.17■□□□□ 0.18
CIITA-209ENST00000573309 PANK3Q9H999 370 aa16.17■□□□□ 0.18
CIITA-209ENST00000573309 PRAG1Q86YV5 1406 aa16.17■□□□□ 0.18
CIITA-209ENST00000573309 ATP10AO60312 1499 aa16.16■□□□□ 0.18
CIITA-209ENST00000573309 DISP3Q9P2K9 1392 aa16.16■□□□□ 0.18
CIITA-209ENST00000573309 PLXNC1O60486 1568 aa16.13■□□□□ 0.17
CIITA-209ENST00000573309 MAST1Q9Y2H9 1570 aa16.13■□□□□ 0.17
CIITA-209ENST00000573309 SMG6Q86US8 1419 aaKnown RBP16.12■□□□□ 0.17
CIITA-209ENST00000573309 KIDINS220Q9ULH0 1771 aa16.12■□□□□ 0.17
CIITA-209ENST00000573309 TMF1P82094 1093 aa16.12■□□□□ 0.17
CIITA-209ENST00000573309 TESK2Q96S53 571 aa16.12■□□□□ 0.17
CIITA-209ENST00000573309 KDM5DQ9BY66 1539 aa16.11■□□□□ 0.17
CIITA-209ENST00000573309 NPATQ14207 1427 aa16.11■□□□□ 0.17
CIITA-209ENST00000573309 NOS1P29475 1434 aa16.11■□□□□ 0.17
CIITA-209ENST00000573309 BCORL1Q5H9F3 1711 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms