RNA–Protein interactions for RNA: ENST00000571272.5

SCARF1-205, Transcript of scavenger receptor class F member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCARF1, Length 2,871 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-205ENST00000571272 RRP1P56182 461 aaKnown RBP23.37■■□□□ 1.33
SCARF1-205ENST00000571272 CEP170Q5SW79 1584 aa23.36■■□□□ 1.33
SCARF1-205ENST00000571272 ARHGEF12Q9NZN5 1544 aa23.35■■□□□ 1.33
SCARF1-205ENST00000571272 CARMIL2Q6F5E8 1435 aa23.35■■□□□ 1.33
SCARF1-205ENST00000571272 ZBTB47Q9UFB7 747 aaPredicted RBP23.34■■□□□ 1.33
SCARF1-205ENST00000571272 RCAN3Q9UKA8 241 aa23.34■■□□□ 1.33
SCARF1-205ENST00000571272 RGL3Q3MIN7 710 aa23.34■■□□□ 1.33
SCARF1-205ENST00000571272 CDC42BPAQ5VT25 1732 aa23.32■■□□□ 1.32
SCARF1-205ENST00000571272 NPM2Q86SE8 214 aaKnown RBP23.31■■□□□ 1.32
SCARF1-205ENST00000571272 NLRP13Q86W25 1043 aa23.3■■□□□ 1.32
SCARF1-205ENST00000571272 NBPF1Q3BBV0 1214 aa23.3■■□□□ 1.32
SCARF1-205ENST00000571272 KTN1Q86UP2 1357 aaKnown RBP23.3■■□□□ 1.32
SCARF1-205ENST00000571272 MAGI1Q96QZ7 1491 aaPredicted RBP23.3■■□□□ 1.32
SCARF1-205ENST00000571272 ABCC10Q5T3U5 1492 aa23.29■■□□□ 1.32
SCARF1-205ENST00000571272 SHANK2Q9UPX8 1470 aa23.29■■□□□ 1.32
SCARF1-205ENST00000571272 CDCA7LQ96GN5 454 aa23.29■■□□□ 1.32
SCARF1-205ENST00000571272 ATP10BO94823 1461 aa23.28■■□□□ 1.32
SCARF1-205ENST00000571272 SYNJ2O15056 1496 aa23.28■■□□□ 1.32
SCARF1-205ENST00000571272 CC2D1BQ5T0F9 858 aaKnown RBP23.26■■□□□ 1.31
SCARF1-205ENST00000571272 KDM5DQ9BY66 1539 aa23.25■■□□□ 1.31
SCARF1-205ENST00000571272 PTPRGP23470 1445 aa23.24■■□□□ 1.31
SCARF1-205ENST00000571272 PARD3Q8TEW0 1356 aa23.24■■□□□ 1.31
SCARF1-205ENST00000571272 PER1O15534 1290 aaPredicted RBP23.23■■□□□ 1.31
SCARF1-205ENST00000571272 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.23■■□□□ 1.31
SCARF1-205ENST00000571272 PLIN1O60240 522 aa23.23■■□□□ 1.31
SCARF1-205ENST00000571272 E9PCH4 1651 aa23.22■■□□□ 1.31
SCARF1-205ENST00000571272 RTL5Q5HYW3 569 aaPredicted RBP23.22■■□□□ 1.31
SCARF1-205ENST00000571272 CCDC144AA2RUR9 1427 aa23.21■■□□□ 1.31
SCARF1-205ENST00000571272 PRAG1Q86YV5 1406 aa23.21■■□□□ 1.31
SCARF1-205ENST00000571272 TCERG1O14776 1098 aaKnown RBP23.2■■□□□ 1.3
SCARF1-205ENST00000571272 PDE3BQ13370 1112 aa23.2■■□□□ 1.3
SCARF1-205ENST00000571272 PDE4AP27815 886 aa23.2■■□□□ 1.3
SCARF1-205ENST00000571272 ABCA8O94911 1581 aa23.2■■□□□ 1.3
SCARF1-205ENST00000571272 FAM135AQ9P2D6 1515 aa23.19■■□□□ 1.3
SCARF1-205ENST00000571272 NUP160Q12769 1436 aa23.18■■□□□ 1.3
SCARF1-205ENST00000571272 PANK3Q9H999 370 aa23.17■■□□□ 1.3
SCARF1-205ENST00000571272 ERCC6Q03468 1493 aa23.16■■□□□ 1.3
SCARF1-205ENST00000571272 DISP3Q9P2K9 1392 aa23.16■■□□□ 1.3
SCARF1-205ENST00000571272 SKAP1Q86WV1 359 aa23.15■■□□□ 1.3
SCARF1-205ENST00000571272 TRPM1Q7Z4N2 1603 aa23.14■■□□□ 1.29
SCARF1-205ENST00000571272 TESK2Q96S53 571 aa23.14■■□□□ 1.29
SCARF1-205ENST00000571272 BACH2Q9BYV9 841 aa23.13■■□□□ 1.29
SCARF1-205ENST00000571272 CCDC141Q6ZP82 1450 aa23.13■■□□□ 1.29
SCARF1-205ENST00000571272 ARHGEF5Q12774 1597 aa23.12■■□□□ 1.29
SCARF1-205ENST00000571272 LAS1LQ9Y4W2 734 aaKnown RBP23.11■■□□□ 1.29
SCARF1-205ENST00000571272 CRBNQ96SW2 442 aa23.11■■□□□ 1.29
SCARF1-205ENST00000571272 PLA2R1Q13018 1463 aa23.1■■□□□ 1.29
SCARF1-205ENST00000571272 A2MP01023 1474 aa23.1■■□□□ 1.29
SCARF1-205ENST00000571272 SAMD9LQ8IVG5 1584 aa23.09■■□□□ 1.29
SCARF1-205ENST00000571272 COL17A1Q9UMD9 1497 aaPredicted RBP23.09■■□□□ 1.29
SCARF1-205ENST00000571272 GPRASP1Q5JY77 1395 aa23.08■■□□□ 1.28
SCARF1-205ENST00000571272 MS4A1P11836 297 aa23.07■■□□□ 1.28
SCARF1-205ENST00000571272 WASHC2CQ9Y4E1 1318 aa23.06■■□□□ 1.28
SCARF1-205ENST00000571272 TMF1P82094 1093 aa23.06■■□□□ 1.28
SCARF1-205ENST00000571272 RSPH4AQ5TD94 716 aa23.06■■□□□ 1.28
SCARF1-205ENST00000571272 ERBINQ96RT1 1412 aa23.06■■□□□ 1.28
SCARF1-205ENST00000571272 C20orf194Q5TEA3 1177 aa23.05■■□□□ 1.28
SCARF1-205ENST00000571272 ADAMTS8Q9UP79 889 aa23.04■■□□□ 1.28
SCARF1-205ENST00000571272 CDC42BPBQ9Y5S2 1711 aa23.04■■□□□ 1.28
SCARF1-205ENST00000571272 BLMP54132 1417 aaPredicted RBP23.04■■□□□ 1.28
SCARF1-205ENST00000571272 SYCP2Q9BX26 1530 aa23.03■■□□□ 1.28
SCARF1-205ENST00000571272 NEFMP07197 916 aa23.02■■□□□ 1.28
SCARF1-205ENST00000571272 PRDM15P57071 1507 aaPredicted RBP23.01■■□□□ 1.27
SCARF1-205ENST00000571272 PLEKHH2Q8IVE3 1493 aa23■■□□□ 1.27
SCARF1-205ENST00000571272 PREX2Q70Z35 1606 aa22.98■■□□□ 1.27
SCARF1-205ENST00000571272 ARHGAP5Q13017 1502 aa22.97■■□□□ 1.27
SCARF1-205ENST00000571272 KNSTRNQ9Y448 316 aa22.95■■□□□ 1.27
SCARF1-205ENST00000571272 WDR43Q15061 677 aaKnown RBP eCLIP22.94■■□□□ 1.26
SCARF1-205ENST00000571272 ZMYM4Q5VZL5 1548 aa22.94■■□□□ 1.26
SCARF1-205ENST00000571272 INSRP06213 1382 aa22.94■■□□□ 1.26
SCARF1-205ENST00000571272 UNC13BO14795 1591 aa22.94■■□□□ 1.26
SCARF1-205ENST00000571272 PPP2R1AP30153 589 aa22.93■■□□□ 1.26
SCARF1-205ENST00000571272 MYO5CQ9NQX4 1742 aa22.93■■□□□ 1.26
SCARF1-205ENST00000571272 PLEKHH1Q9ULM0 1364 aa22.93■■□□□ 1.26
SCARF1-205ENST00000571272 DUSP27Q5VZP5 1158 aa22.91■■□□□ 1.26
SCARF1-205ENST00000571272 LAMC1P11047 1609 aa22.91■■□□□ 1.26
SCARF1-205ENST00000571272 MAGI2Q86UL8 1455 aa22.91■■□□□ 1.26
SCARF1-205ENST00000571272 TTC37Q6PGP7 1564 aa22.91■■□□□ 1.26
SCARF1-205ENST00000571272 EIF2AK4Q9P2K8 1649 aaKnown RBP22.89■■□□□ 1.25
SCARF1-205ENST00000571272 SLC4A3P48751 1232 aa22.89■■□□□ 1.25
SCARF1-205ENST00000571272 PPM1GO15355 546 aaPredicted RBP22.88■■□□□ 1.25
SCARF1-205ENST00000571272 IQGAP3Q86VI3 1631 aa22.88■■□□□ 1.25
SCARF1-205ENST00000571272 KDM2BQ8NHM5 1336 aa22.87■■□□□ 1.25
SCARF1-205ENST00000571272 WDR7Q9Y4E6 1490 aa22.87■■□□□ 1.25
SCARF1-205ENST00000571272 AMER1Q5JTC6 1135 aaPredicted RBP22.87■■□□□ 1.25
SCARF1-205ENST00000571272 USP35Q9P2H5 1018 aa22.87■■□□□ 1.25
SCARF1-205ENST00000571272 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP22.87■■□□□ 1.25
SCARF1-205ENST00000571272 GOLGA2Q08379 1002 aa22.87■■□□□ 1.25
SCARF1-205ENST00000571272 DDRGK1Q96HY6 314 aa22.86■■□□□ 1.25
SCARF1-205ENST00000571272 MAST1Q9Y2H9 1570 aa22.86■■□□□ 1.25
SCARF1-205ENST00000571272 CCDC146Q8IYE0 955 aa22.85■■□□□ 1.25
SCARF1-205ENST00000571272 IL27Q8NEV9 243 aa22.85■■□□□ 1.25
SCARF1-205ENST00000571272 CENPQQ7L2Z9 268 aaPredicted RBP22.84■■□□□ 1.25
SCARF1-205ENST00000571272 ATP10AO60312 1499 aa22.82■■□□□ 1.24
SCARF1-205ENST00000571272 ZNF521Q96K83 1311 aa22.82■■□□□ 1.24
SCARF1-205ENST00000571272 DUOX2Q9NRD8 1548 aa22.82■■□□□ 1.24
SCARF1-205ENST00000571272 RGS3P49796 1198 aa22.81■■□□□ 1.24
SCARF1-205ENST00000571272 PLXNC1O60486 1568 aa22.8■■□□□ 1.24
SCARF1-205ENST00000571272 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.79■■□□□ 1.24
SCARF1-205ENST00000571272 RTN4Q9NQC3 1192 aaKnown RBP22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms