RNA–Protein interactions for RNA: ENST00000566843.1

COMMD4-215, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-215ENST00000566843 EXOC6Q8TAG9 804 aa20.92■□□□□ 0.94
COMMD4-215ENST00000566843 USP35Q9P2H5 1018 aa20.92■□□□□ 0.94
COMMD4-215ENST00000566843 PKD2Q13563 968 aa20.91■□□□□ 0.94
COMMD4-215ENST00000566843 PDE4AP27815 886 aa20.9■□□□□ 0.94
COMMD4-215ENST00000566843 PDE3BQ13370 1112 aa20.9■□□□□ 0.94
COMMD4-215ENST00000566843 RCAN3Q9UKA8 241 aa20.9■□□□□ 0.94
COMMD4-215ENST00000566843 TROQ12816 1431 aaPredicted RBP20.9■□□□□ 0.94
COMMD4-215ENST00000566843 ZNF326Q5BKZ1 582 aaKnown RBP20.89■□□□□ 0.94
COMMD4-215ENST00000566843 BACH2Q9BYV9 841 aa20.89■□□□□ 0.94
COMMD4-215ENST00000566843 ATP10BO94823 1461 aa20.88■□□□□ 0.93
COMMD4-215ENST00000566843 ADCY10Q96PN6 1610 aa20.88■□□□□ 0.93
COMMD4-215ENST00000566843 GPATCH8Q9UKJ3 1502 aaKnown RBP20.87■□□□□ 0.93
COMMD4-215ENST00000566843 CARD11Q9BXL7 1154 aa20.87■□□□□ 0.93
COMMD4-215ENST00000566843 ANKRD30AQ9BXX3 1397 aa20.86■□□□□ 0.93
COMMD4-215ENST00000566843 SENP3-EIF4A1A0A087X0R7 540 aa20.85■□□□□ 0.93
COMMD4-215ENST00000566843 KDM5DQ9BY66 1539 aa20.85■□□□□ 0.93
COMMD4-215ENST00000566843 CFDP1Q9UEE9 299 aaPredicted RBP20.84■□□□□ 0.93
COMMD4-215ENST00000566843 INSRP06213 1382 aa20.84■□□□□ 0.93
COMMD4-215ENST00000566843 ANKRD50Q9ULJ7 1429 aa20.84■□□□□ 0.93
COMMD4-215ENST00000566843 PARD3Q8TEW0 1356 aa20.83■□□□□ 0.92
COMMD4-215ENST00000566843 ABCC2Q92887 1545 aa20.82■□□□□ 0.92
COMMD4-215ENST00000566843 NPM2Q86SE8 214 aaKnown RBP20.82■□□□□ 0.92
COMMD4-215ENST00000566843 ST20-MTHFSA0A0A6YYL1 179 aa20.81■□□□□ 0.92
COMMD4-215ENST00000566843 PPM1GO15355 546 aaPredicted RBP20.81■□□□□ 0.92
COMMD4-215ENST00000566843 ZMYM4Q5VZL5 1548 aa20.81■□□□□ 0.92
COMMD4-215ENST00000566843 WASHC2CQ9Y4E1 1318 aa20.81■□□□□ 0.92
COMMD4-215ENST00000566843 NLRP13Q86W25 1043 aa20.81■□□□□ 0.92
COMMD4-215ENST00000566843 PLEKHD1A6NEE1 506 aa20.8■□□□□ 0.92
COMMD4-215ENST00000566843 SHANK2Q9UPX8 1470 aa20.79■□□□□ 0.92
COMMD4-215ENST00000566843 NEFMP07197 916 aa20.79■□□□□ 0.92
COMMD4-215ENST00000566843 IL27Q8NEV9 243 aa20.76■□□□□ 0.91
COMMD4-215ENST00000566843 LAS1LQ9Y4W2 734 aaKnown RBP20.76■□□□□ 0.91
COMMD4-215ENST00000566843 NUP155O75694 1391 aa20.76■□□□□ 0.91
COMMD4-215ENST00000566843 BLMP54132 1417 aaPredicted RBP20.74■□□□□ 0.91
COMMD4-215ENST00000566843 UHRF1BP1LA0JNW5 1464 aa20.74■□□□□ 0.91
COMMD4-215ENST00000566843 DDRGK1Q96HY6 314 aa20.74■□□□□ 0.91
COMMD4-215ENST00000566843 CDC42BPAQ5VT25 1732 aa20.74■□□□□ 0.91
COMMD4-215ENST00000566843 TRPM1Q7Z4N2 1603 aa20.72■□□□□ 0.91
COMMD4-215ENST00000566843 PER1O15534 1290 aaPredicted RBP20.72■□□□□ 0.91
COMMD4-215ENST00000566843 ANO8Q9HCE9 1232 aaPredicted RBP20.72■□□□□ 0.91
COMMD4-215ENST00000566843 PLEKHH2Q8IVE3 1493 aa20.71■□□□□ 0.91
COMMD4-215ENST00000566843 CDCA7LQ96GN5 454 aa20.7■□□□□ 0.9
COMMD4-215ENST00000566843 C9orf84Q5VXU9 1444 aa20.7■□□□□ 0.9
COMMD4-215ENST00000566843 ZNF777Q9ULD5 760 aaPredicted RBP20.7■□□□□ 0.9
COMMD4-215ENST00000566843 ZCCHC11Q5TAX3 1644 aaKnown RBP20.69■□□□□ 0.9
COMMD4-215ENST00000566843 DCAF11Q8TEB1 546 aa20.69■□□□□ 0.9
COMMD4-215ENST00000566843 KDM2AQ9Y2K7 1162 aa20.68■□□□□ 0.9
COMMD4-215ENST00000566843 LAMC1P11047 1609 aa20.67■□□□□ 0.9
COMMD4-215ENST00000566843 PRAG1Q86YV5 1406 aa20.67■□□□□ 0.9
COMMD4-215ENST00000566843 CRBNQ96SW2 442 aa20.67■□□□□ 0.9
COMMD4-215ENST00000566843 SALL2Q9Y467 1007 aaPredicted RBP20.67■□□□□ 0.9
COMMD4-215ENST00000566843 GPRASP1Q5JY77 1395 aa20.66■□□□□ 0.9
COMMD4-215ENST00000566843 ABCC10Q5T3U5 1492 aa20.66■□□□□ 0.9
COMMD4-215ENST00000566843 COL17A1Q9UMD9 1497 aaPredicted RBP20.66■□□□□ 0.9
COMMD4-215ENST00000566843 CYB5RLQ6IPT4 315 aa20.65■□□□□ 0.9
COMMD4-215ENST00000566843 KDM2BQ8NHM5 1336 aa20.64■□□□□ 0.89
COMMD4-215ENST00000566843 PLIN1O60240 522 aa20.63■□□□□ 0.89
COMMD4-215ENST00000566843 RIMBP3CA6NJZ7 1639 aa20.62■□□□□ 0.89
COMMD4-215ENST00000566843 RIMBP3BA6NNM3 1639 aa20.62■□□□□ 0.89
COMMD4-215ENST00000566843 RIMBP3Q9UFD9 1639 aa20.62■□□□□ 0.89
COMMD4-215ENST00000566843 ARHGEF5Q12774 1597 aa20.62■□□□□ 0.89
COMMD4-215ENST00000566843 PRDM15P57071 1507 aaPredicted RBP20.61■□□□□ 0.89
COMMD4-215ENST00000566843 GSE1Q14687 1217 aa20.59■□□□□ 0.89
COMMD4-215ENST00000566843 FAM135AQ9P2D6 1515 aa20.58■□□□□ 0.89
COMMD4-215ENST00000566843 NPM1P06748 294 aaKnown RBP eCLIP20.58■□□□□ 0.88
COMMD4-215ENST00000566843 NFKBIBQ15653 356 aa20.57■□□□□ 0.88
COMMD4-215ENST00000566843 TSPY4P0CV99 314 aa20.56■□□□□ 0.88
COMMD4-215ENST00000566843 TSPY10P0CW01 314 aa20.56■□□□□ 0.88
COMMD4-215ENST00000566843 CENPQQ7L2Z9 268 aaPredicted RBP20.56■□□□□ 0.88
COMMD4-215ENST00000566843 SKAP1Q86WV1 359 aa20.56■□□□□ 0.88
COMMD4-215ENST00000566843 TESK2Q96S53 571 aa20.56■□□□□ 0.88
COMMD4-215ENST00000566843 RTN4Q9NQC3 1192 aaKnown RBP20.56■□□□□ 0.88
COMMD4-215ENST00000566843 DISP3Q9P2K9 1392 aa20.55■□□□□ 0.88
COMMD4-215ENST00000566843 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP20.55■□□□□ 0.88
COMMD4-215ENST00000566843 ASXL2Q76L83 1435 aa20.54■□□□□ 0.88
COMMD4-215ENST00000566843 TTC37Q6PGP7 1564 aa20.54■□□□□ 0.88
COMMD4-215ENST00000566843 WDR7Q9Y4E6 1490 aa20.54■□□□□ 0.88
COMMD4-215ENST00000566843 NBPF1Q3BBV0 1214 aa20.53■□□□□ 0.88
COMMD4-215ENST00000566843 C20orf194Q5TEA3 1177 aa20.53■□□□□ 0.88
COMMD4-215ENST00000566843 CCDC144AA2RUR9 1427 aa20.53■□□□□ 0.88
COMMD4-215ENST00000566843 ERBINQ96RT1 1412 aa20.53■□□□□ 0.88
COMMD4-215ENST00000566843 A2MP01023 1474 aa20.53■□□□□ 0.88
COMMD4-215ENST00000566843 CC2D1BQ5T0F9 858 aaKnown RBP20.53■□□□□ 0.88
COMMD4-215ENST00000566843 EIF2AK4Q9P2K8 1649 aaKnown RBP20.52■□□□□ 0.88
COMMD4-215ENST00000566843 FAM161AQ3B820 660 aa20.52■□□□□ 0.88
COMMD4-215ENST00000566843 PANK3Q9H999 370 aa20.52■□□□□ 0.88
COMMD4-215ENST00000566843 PLA2R1Q13018 1463 aa20.51■□□□□ 0.87
COMMD4-215ENST00000566843 C8orf34Q49A92 452 aa20.51■□□□□ 0.87
COMMD4-215ENST00000566843 UNC13BO14795 1591 aa20.49■□□□□ 0.87
COMMD4-215ENST00000566843 ZNF521Q96K83 1311 aa20.49■□□□□ 0.87
COMMD4-215ENST00000566843 DUSP27Q5VZP5 1158 aa20.48■□□□□ 0.87
COMMD4-215ENST00000566843 BRPF3Q9ULD4 1205 aa20.48■□□□□ 0.87
COMMD4-215ENST00000566843 CCDC141Q6ZP82 1450 aa20.48■□□□□ 0.87
COMMD4-215ENST00000566843 MYO5CQ9NQX4 1742 aa20.47■□□□□ 0.87
COMMD4-215ENST00000566843 FRAT1Q92837 279 aaPredicted RBP20.47■□□□□ 0.87
COMMD4-215ENST00000566843 ADAMTS8Q9UP79 889 aa20.47■□□□□ 0.87
COMMD4-215ENST00000566843 PLEKHH1Q9ULM0 1364 aa20.47■□□□□ 0.87
COMMD4-215ENST00000566843 TMF1P82094 1093 aa20.46■□□□□ 0.87
COMMD4-215ENST00000566843 SLC4A3P48751 1232 aa20.46■□□□□ 0.87
COMMD4-215ENST00000566843 HNRNPMP52272 730 aaKnown RBP eCLIP20.46■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms