RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 CAMK2BQ13554 666 aa11.28□□□□□ -0.6
VPS35-204ENST00000563884 PCDHGA10Q9Y5H3 936 aa11.28□□□□□ -0.6
VPS35-204ENST00000563884 MYO15BQ96JP2 1530 aa11.27□□□□□ -0.61
VPS35-204ENST00000563884 CFAP44Q96MT7 982 aa11.27□□□□□ -0.61
VPS35-204ENST00000563884 ZBED2Q9BTP6 218 aa11.27□□□□□ -0.61
VPS35-204ENST00000563884 PAXIP1Q6ZW49 1069 aaPredicted RBP11.26□□□□□ -0.61
VPS35-204ENST00000563884 TYW1BQ6NUM6 668 aa11.25□□□□□ -0.61
VPS35-204ENST00000563884 GOLGA8CPA6NN73 597 aa11.24□□□□□ -0.61
VPS35-204ENST00000563884 PHF14O94880 888 aa11.24□□□□□ -0.61
VPS35-204ENST00000563884 FBXW7Q969H0 707 aa11.24□□□□□ -0.61
VPS35-204ENST00000563884 MRPL50Q8N5N7 158 aaKnown RBP11.23□□□□□ -0.61
VPS35-204ENST00000563884 PLA2G2EQ9NZK7 142 aa11.23□□□□□ -0.61
VPS35-204ENST00000563884 PPP1R3GB7ZBB8 358 aa11.21□□□□□ -0.61
VPS35-204ENST00000563884 BHMG1C9JSJ3 638 aaPredicted RBP11.21□□□□□ -0.61
VPS35-204ENST00000563884 PTPN5P54829 565 aa11.2□□□□□ -0.62
VPS35-204ENST00000563884 NBPF3Q9H094 633 aa11.2□□□□□ -0.62
VPS35-204ENST00000563884 EPAS1Q99814 870 aa11.19□□□□□ -0.62
VPS35-204ENST00000563884 COL9A1P20849 921 aa11.18□□□□□ -0.62
VPS35-204ENST00000563884 DDX12PQ92771 950 aa11.18□□□□□ -0.62
VPS35-204ENST00000563884 PROX2Q3B8N5 592 aa11.17□□□□□ -0.62
VPS35-204ENST00000563884 WNT2BQ93097 391 aa11.17□□□□□ -0.62
VPS35-204ENST00000563884 WDR70Q9NW82 654 aa11.17□□□□□ -0.62
VPS35-204ENST00000563884 RBM33Q96EV2 1170 aaKnown RBP11.16□□□□□ -0.62
VPS35-204ENST00000563884 C6orf132Q5T0Z8 1188 aa11.15□□□□□ -0.62
VPS35-204ENST00000563884 E2F4Q16254 413 aa11.14□□□□□ -0.63
VPS35-204ENST00000563884 THSD4Q6ZMP0 1018 aa11.14□□□□□ -0.63
VPS35-204ENST00000563884 RABGEF1Q9UJ41 708 aa11.14□□□□□ -0.63
VPS35-204ENST00000563884 PDIA6Q15084 440 aa11.12□□□□□ -0.63
VPS35-204ENST00000563884 SPDYE16A6NNV3 312 aaPredicted RBP11.11□□□□□ -0.63
VPS35-204ENST00000563884 NBR1Q14596 966 aa11.11□□□□□ -0.63
VPS35-204ENST00000563884 KIAA1468Q9P260 1216 aa11.1□□□□□ -0.63
VPS35-204ENST00000563884 ERCC6Q03468 1493 aa11.08□□□□□ -0.64
VPS35-204ENST00000563884 MAP3K7O43318 606 aa11.08□□□□□ -0.64
VPS35-204ENST00000563884 ANKK1Q8NFD2 765 aa11.08□□□□□ -0.64
VPS35-204ENST00000563884 EN1Q05925 392 aaPredicted RBP11.07□□□□□ -0.64
VPS35-204ENST00000563884 ONECUT3O60422 494 aaPredicted RBP11.06□□□□□ -0.64
VPS35-204ENST00000563884 TRIM6-TRIM34B2RNG4 842 aa11.05□□□□□ -0.64
VPS35-204ENST00000563884 LAPTM4BQ86VI4 370 aa11.05□□□□□ -0.64
VPS35-204ENST00000563884 GRXCR2A6NFK2 248 aa11.04□□□□□ -0.64
VPS35-204ENST00000563884 TSR1Q2NL82 804 aaKnown RBP11.04□□□□□ -0.64
VPS35-204ENST00000563884 SEPT9Q9UHD8 586 aaPredicted RBP11.04□□□□□ -0.64
VPS35-204ENST00000563884 BCAMP50895 628 aa11.02□□□□□ -0.65
VPS35-204ENST00000563884 ZFRQ96KR1 1074 aaKnown RBP11.02□□□□□ -0.65
VPS35-204ENST00000563884 ARIH1Q9Y4X5 557 aaPredicted RBP11.02□□□□□ -0.65
VPS35-204ENST00000563884 SOWAHBA6NEL2 793 aa10.99□□□□□ -0.65
VPS35-204ENST00000563884 PACS2Q86VP3 889 aa10.99□□□□□ -0.65
VPS35-204ENST00000563884 FAM98CQ17RN3 349 aaKnown RBP10.98□□□□□ -0.65
VPS35-204ENST00000563884 TSHZ2Q9NRE2 1034 aa10.97□□□□□ -0.65
VPS35-204ENST00000563884 TSKSQ9UJT2 592 aa10.97□□□□□ -0.65
VPS35-204ENST00000563884 SCRIBQ14160 1630 aa10.97□□□□□ -0.65
VPS35-204ENST00000563884 PLCB2Q00722 1185 aa10.96□□□□□ -0.65
VPS35-204ENST00000563884 PRIM1P49642 420 aaKnown RBP10.95□□□□□ -0.66
VPS35-204ENST00000563884 CERKQ8TCT0 537 aa10.95□□□□□ -0.66
VPS35-204ENST00000563884 CDCA7LQ96GN5 454 aa10.95□□□□□ -0.66
VPS35-204ENST00000563884 PRSS12P56730 875 aa10.94□□□□□ -0.66
VPS35-204ENST00000563884 LRCH3Q96II8 777 aa10.94□□□□□ -0.66
VPS35-204ENST00000563884 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.94□□□□□ -0.66
VPS35-204ENST00000563884 OSBPP22059 807 aa10.93□□□□□ -0.66
VPS35-204ENST00000563884 IFFO2Q5TF58 517 aa10.93□□□□□ -0.66
VPS35-204ENST00000563884 WBP1LQ9NX94 342 aa10.93□□□□□ -0.66
VPS35-204ENST00000563884 SMAPO00193 183 aa10.91□□□□□ -0.66
VPS35-204ENST00000563884 NYAP1Q6ZVC0 841 aa10.91□□□□□ -0.66
VPS35-204ENST00000563884 CDHR5Q9HBB8 845 aa10.91□□□□□ -0.66
VPS35-204ENST00000563884 HPS5Q9UPZ3 1129 aa10.91□□□□□ -0.66
VPS35-204ENST00000563884 TSR3Q9UJK0 312 aaKnown RBP10.9□□□□□ -0.66
VPS35-204ENST00000563884 A0A0G2JS52 829 aa10.88□□□□□ -0.67
VPS35-204ENST00000563884 NBPF26B4DH59 902 aa10.88□□□□□ -0.67
VPS35-204ENST00000563884 FAM198AQ9UFP1 575 aa10.88□□□□□ -0.67
VPS35-204ENST00000563884 PNMA3Q9UL41 463 aa10.88□□□□□ -0.67
VPS35-204ENST00000563884 ARHGEF1Q92888 912 aaKnown RBP10.87□□□□□ -0.67
VPS35-204ENST00000563884 TATDN2Q93075 761 aa10.87□□□□□ -0.67
VPS35-204ENST00000563884 DCAF1Q9Y4B6 1507 aa10.86□□□□□ -0.67
VPS35-204ENST00000563884 ITGBL1O95965 494 aaPredicted RBP10.86□□□□□ -0.67
VPS35-204ENST00000563884 PPP4CP60510 307 aa10.85□□□□□ -0.67
VPS35-204ENST00000563884 SAMD7Q7Z3H4 446 aa10.85□□□□□ -0.67
VPS35-204ENST00000563884 KCNV2Q8TDN2 545 aa10.84□□□□□ -0.67
VPS35-204ENST00000563884 THOC2Q8NI27 1593 aaKnown RBP10.84□□□□□ -0.67
VPS35-204ENST00000563884 C3orf80F5H4A9 247 aa10.83□□□□□ -0.68
VPS35-204ENST00000563884 RGS20O76081 388 aa10.83□□□□□ -0.68
VPS35-204ENST00000563884 NUDT18Q6ZVK8 323 aa10.83□□□□□ -0.68
VPS35-204ENST00000563884 RBM27Q9P2N5 1060 aaKnown RBP10.83□□□□□ -0.68
VPS35-204ENST00000563884 KCNC4Q03721 635 aa10.82□□□□□ -0.68
VPS35-204ENST00000563884 MLLT3P42568 568 aaPredicted RBP10.81□□□□□ -0.68
VPS35-204ENST00000563884 HDGFP51858 240 aaKnown RBP10.81□□□□□ -0.68
VPS35-204ENST00000563884 RNF40O75150 1001 aa10.8□□□□□ -0.68
VPS35-204ENST00000563884 PADI6Q6TGC4 694 aa10.8□□□□□ -0.68
VPS35-204ENST00000563884 NPDC1Q9NQX5 325 aaPredicted RBP10.79□□□□□ -0.68
VPS35-204ENST00000563884 P3H3Q8IVL6 736 aa10.76□□□□□ -0.69
VPS35-204ENST00000563884 TTC13Q8NBP0 860 aa10.76□□□□□ -0.69
VPS35-204ENST00000563884 BAZ1AQ9NRL2 1556 aaPredicted RBP10.73□□□□□ -0.69
VPS35-204ENST00000563884 IRX2Q9BZI1 471 aaPredicted RBP10.73□□□□□ -0.69
VPS35-204ENST00000563884 ZCCHC6Q5VYS8 1495 aaKnown RBP10.73□□□□□ -0.69
VPS35-204ENST00000563884 SWT1Q5T5J6 900 aaKnown RBP10.72□□□□□ -0.69
VPS35-204ENST00000563884 NUTM2FA1L443 756 aa10.71□□□□□ -0.69
VPS35-204ENST00000563884 SLC4A3P48751 1232 aa10.7□□□□□ -0.7
VPS35-204ENST00000563884 HAP1P54257 671 aaPredicted RBP10.7□□□□□ -0.7
VPS35-204ENST00000563884 SLF2Q8IX21 1173 aa10.7□□□□□ -0.7
VPS35-204ENST00000563884 PTGDRQ13258 359 aa10.69□□□□□ -0.7
VPS35-204ENST00000563884 TJAP1Q5JTD0 557 aa10.69□□□□□ -0.7
VPS35-204ENST00000563884 NECTIN2Q92692 538 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms