RNA–Protein interactions for RNA: ENST00000563836.1

SMG1-209, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 5

Gene SMG1, Length 565 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-209ENST00000563836 PCDHGA10Q9Y5H3 936 aa13.92□□□□□ -0.18
SMG1-209ENST00000563836 PPP4R3BQ5MIZ7 849 aa13.9□□□□□ -0.18
SMG1-209ENST00000563836 TESPA1A2RU30 521 aaPredicted RBP13.89□□□□□ -0.19
SMG1-209ENST00000563836 MLLT3P42568 568 aaPredicted RBP13.89□□□□□ -0.19
SMG1-209ENST00000563836 ZNF687Q8N1G0 1237 aa13.89□□□□□ -0.19
SMG1-209ENST00000563836 EPAS1Q99814 870 aa13.89□□□□□ -0.19
SMG1-209ENST00000563836 CC2D2AQ9P2K1 1620 aa13.89□□□□□ -0.19
SMG1-209ENST00000563836 HMGXB3Q12766 1538 aa13.88□□□□□ -0.19
SMG1-209ENST00000563836 GRXCR2A6NFK2 248 aa13.87□□□□□ -0.19
SMG1-209ENST00000563836 TYW1BQ6NUM6 668 aa13.87□□□□□ -0.19
SMG1-209ENST00000563836 FBXW7Q969H0 707 aa13.86□□□□□ -0.19
SMG1-209ENST00000563836 ZDHHC16Q969W1 377 aa13.86□□□□□ -0.19
SMG1-209ENST00000563836 NCAPD3P42695 1498 aa13.86□□□□□ -0.19
SMG1-209ENST00000563836 NBR1Q14596 966 aa13.85□□□□□ -0.19
SMG1-209ENST00000563836 OSBPP22059 807 aa13.84□□□□□ -0.19
SMG1-209ENST00000563836 ADAM33Q9BZ11 813 aa13.82□□□□□ -0.2
SMG1-209ENST00000563836 BCL2L12Q9HB09 334 aa13.82□□□□□ -0.2
SMG1-209ENST00000563836 EN1Q05925 392 aaPredicted RBP13.81□□□□□ -0.2
SMG1-209ENST00000563836 PRIM1P49642 420 aaKnown RBP13.8□□□□□ -0.2
SMG1-209ENST00000563836 SMYD5Q6GMV2 418 aa13.8□□□□□ -0.2
SMG1-209ENST00000563836 POTEEQ6S8J3 1075 aa13.8□□□□□ -0.2
SMG1-209ENST00000563836 PBX2P40425 430 aa13.79□□□□□ -0.2
SMG1-209ENST00000563836 CDAN1Q8IWY9 1227 aa13.78□□□□□ -0.2
SMG1-209ENST00000563836 ARHGAP33O14559 1287 aa13.76□□□□□ -0.21
SMG1-209ENST00000563836 RBM33Q96EV2 1170 aaKnown RBP13.76□□□□□ -0.21
SMG1-209ENST00000563836 CCDC88BA6NC98 1476 aa13.75□□□□□ -0.21
SMG1-209ENST00000563836 PTPREP23469 700 aa13.75□□□□□ -0.21
SMG1-209ENST00000563836 MAP3K7O43318 606 aa13.74□□□□□ -0.21
SMG1-209ENST00000563836 C6orf132Q5T0Z8 1188 aa13.74□□□□□ -0.21
SMG1-209ENST00000563836 BCANQ96GW7 911 aa13.74□□□□□ -0.21
SMG1-209ENST00000563836 PCDH10Q9P2E7 1040 aa13.74□□□□□ -0.21
SMG1-209ENST00000563836 TSR1Q2NL82 804 aaKnown RBP13.72□□□□□ -0.21
SMG1-209ENST00000563836 KCNK17Q96T54 332 aa13.72□□□□□ -0.21
SMG1-209ENST00000563836 KRTAP3-3Q9BYR6 98 aa13.72□□□□□ -0.21
SMG1-209ENST00000563836 KRTAP3-2Q9BYR7 98 aa13.72□□□□□ -0.21
SMG1-209ENST00000563836 AXIN2Q9Y2T1 843 aa13.72□□□□□ -0.21
SMG1-209ENST00000563836 PSEN2P49810 448 aa13.71□□□□□ -0.21
SMG1-209ENST00000563836 TULP1O00294 542 aaPredicted RBP13.7□□□□□ -0.22
SMG1-209ENST00000563836 KCNH8Q96L42 1107 aa13.7□□□□□ -0.22
SMG1-209ENST00000563836 PPP1R3GB7ZBB8 358 aa13.68□□□□□ -0.22
SMG1-209ENST00000563836 RBM26Q5T8P6 1007 aaKnown RBP13.68□□□□□ -0.22
SMG1-209ENST00000563836 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.67□□□□□ -0.22
SMG1-209ENST00000563836 COL9A1P20849 921 aa13.66□□□□□ -0.22
SMG1-209ENST00000563836 LSM11P83369 360 aaKnown RBP eCLIP13.66□□□□□ -0.22
SMG1-209ENST00000563836 DMRTA1Q5VZB9 504 aa13.66□□□□□ -0.22
SMG1-209ENST00000563836 CDHR5Q9HBB8 845 aa13.66□□□□□ -0.22
SMG1-209ENST00000563836 CERKQ8TCT0 537 aa13.63□□□□□ -0.23
SMG1-209ENST00000563836 SLC4A5Q9BY07 1137 aa13.63□□□□□ -0.23
SMG1-209ENST00000563836 NPDC1Q9NQX5 325 aaPredicted RBP13.63□□□□□ -0.23
SMG1-209ENST00000563836 ZBED2Q9BTP6 218 aa13.62□□□□□ -0.23
SMG1-209ENST00000563836 NUTM2FA1L443 756 aa13.61□□□□□ -0.23
SMG1-209ENST00000563836 TK2O00142 265 aa13.6□□□□□ -0.23
SMG1-209ENST00000563836 PTGDRQ13258 359 aa13.6□□□□□ -0.23
SMG1-209ENST00000563836 LMOD2Q6P5Q4 547 aa13.6□□□□□ -0.23
SMG1-209ENST00000563836 ANKRD13DQ6ZTN6 518 aa13.57□□□□□ -0.24
SMG1-209ENST00000563836 GPIHBP1Q8IV16 184 aa13.57□□□□□ -0.24
SMG1-209ENST00000563836 VPS9D1Q9Y2B5 631 aa13.57□□□□□ -0.24
SMG1-209ENST00000563836 PRDM2Q13029 1718 aa13.56□□□□□ -0.24
SMG1-209ENST00000563836 GPR37O15354 613 aa13.56□□□□□ -0.24
SMG1-209ENST00000563836 FCHSD2O94868 740 aa13.56□□□□□ -0.24
SMG1-209ENST00000563836 ADGRD1Q6QNK2 874 aa13.56□□□□□ -0.24
SMG1-209ENST00000563836 ONECUT3O60422 494 aaPredicted RBP13.55□□□□□ -0.24
SMG1-209ENST00000563836 PRSS12P56730 875 aa13.55□□□□□ -0.24
SMG1-209ENST00000563836 PROX2Q3B8N5 592 aa13.55□□□□□ -0.24
SMG1-209ENST00000563836 RBM27Q9P2N5 1060 aaKnown RBP13.55□□□□□ -0.24
SMG1-209ENST00000563836 CDCA7LQ96GN5 454 aa13.54□□□□□ -0.24
SMG1-209ENST00000563836 TRIM6-TRIM34B2RNG4 842 aa13.53□□□□□ -0.24
SMG1-209ENST00000563836 CADPSQ9ULU8 1353 aa13.53□□□□□ -0.24
SMG1-209ENST00000563836 HIC1Q14526 733 aa13.52□□□□□ -0.25
SMG1-209ENST00000563836 TTC13Q8NBP0 860 aa13.52□□□□□ -0.25
SMG1-209ENST00000563836 CFTRP13569 1480 aa13.51□□□□□ -0.25
SMG1-209ENST00000563836 HRO43593 1189 aa13.51□□□□□ -0.25
SMG1-209ENST00000563836 TSKSQ9UJT2 592 aa13.51□□□□□ -0.25
SMG1-209ENST00000563836 RABGEF1Q9UJ41 708 aa13.5□□□□□ -0.25
SMG1-209ENST00000563836 LAMC3Q9Y6N6 1575 aa13.49□□□□□ -0.25
SMG1-209ENST00000563836 PADI6Q6TGC4 694 aa13.49□□□□□ -0.25
SMG1-209ENST00000563836 FAM198AQ9UFP1 575 aa13.49□□□□□ -0.25
SMG1-209ENST00000563836 BHMG1C9JSJ3 638 aaPredicted RBP13.48□□□□□ -0.25
SMG1-209ENST00000563836 GNPATO15228 680 aa13.48□□□□□ -0.25
SMG1-209ENST00000563836 KIAA1468Q9P260 1216 aa13.47□□□□□ -0.25
SMG1-209ENST00000563836 PACS2Q86VP3 889 aa13.45□□□□□ -0.26
SMG1-209ENST00000563836 ZC3H15Q8WU90 426 aaKnown RBP13.45□□□□□ -0.26
SMG1-209ENST00000563836 SPNS2Q8IVW8 549 aa13.44□□□□□ -0.26
SMG1-209ENST00000563836 WRNQ14191 1432 aaPredicted RBP eCLIP13.42□□□□□ -0.26
SMG1-209ENST00000563836 PDS5BQ9NTI5 1447 aa13.42□□□□□ -0.26
SMG1-209ENST00000563836 FECHP22830 423 aa13.42□□□□□ -0.26
SMG1-209ENST00000563836 NBPF3Q9H094 633 aa13.42□□□□□ -0.26
SMG1-209ENST00000563836 ABCC8Q09428 1581 aa13.41□□□□□ -0.26
SMG1-209ENST00000563836 ZMYND10O75800 440 aa13.4□□□□□ -0.26
SMG1-209ENST00000563836 NBPF26B4DH59 902 aa13.39□□□□□ -0.27
SMG1-209ENST00000563836 C3orf80F5H4A9 247 aa13.39□□□□□ -0.27
SMG1-209ENST00000563836 TATDN2Q93075 761 aa13.39□□□□□ -0.27
SMG1-209ENST00000563836 FANCD2Q9BXW9 1451 aa13.38□□□□□ -0.27
SMG1-209ENST00000563836 LAPTM4BQ86VI4 370 aa13.38□□□□□ -0.27
SMG1-209ENST00000563836 MRPL50Q8N5N7 158 aaKnown RBP13.38□□□□□ -0.27
SMG1-209ENST00000563836 ADGRG1Q9Y653 693 aa13.38□□□□□ -0.27
SMG1-209ENST00000563836 NUDT18Q6ZVK8 323 aa13.37□□□□□ -0.27
SMG1-209ENST00000563836 STAC3Q96MF2 364 aa13.37□□□□□ -0.27
SMG1-209ENST00000563836 PNMA3Q9UL41 463 aa13.37□□□□□ -0.27
SMG1-209ENST00000563836 CEP164Q9UPV0 1460 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms