RNA–Protein interactions for RNA: ENST00000563149.1

USB1-207, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 2 BASIC

Gene USB1, Length 1,751 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-207ENST00000563149 HNRNPMP52272 730 aaKnown RBP eCLIP17.71■□□□□ 0.43
USB1-207ENST00000563149 POLR3GLQ9BT43 218 aa17.71■□□□□ 0.43
USB1-207ENST00000563149 TMC1Q8TDI8 760 aa17.7■□□□□ 0.42
USB1-207ENST00000563149 UNC13BO14795 1591 aa17.69■□□□□ 0.42
USB1-207ENST00000563149 LRPPRCP42704 1394 aaKnown RBP17.69■□□□□ 0.42
USB1-207ENST00000563149 MYBBP1AQ9BQG0 1328 aaKnown RBP17.69■□□□□ 0.42
USB1-207ENST00000563149 DCAF11Q8TEB1 546 aa17.68■□□□□ 0.42
USB1-207ENST00000563149 LAMC1P11047 1609 aa17.68■□□□□ 0.42
USB1-207ENST00000563149 TRPM1Q7Z4N2 1603 aa17.68■□□□□ 0.42
USB1-207ENST00000563149 ST20-MTHFSA0A0A6YYL1 179 aa17.68■□□□□ 0.42
USB1-207ENST00000563149 MSH5O43196 834 aa17.68■□□□□ 0.42
USB1-207ENST00000563149 B4GALNT3Q6L9W6 998 aa17.67■□□□□ 0.42
USB1-207ENST00000563149 CCDC144AA2RUR9 1427 aa17.66■□□□□ 0.42
USB1-207ENST00000563149 PRAG1Q86YV5 1406 aa17.66■□□□□ 0.42
USB1-207ENST00000563149 PLEKHH2Q8IVE3 1493 aa17.66■□□□□ 0.42
USB1-207ENST00000563149 KDM2AQ9Y2K7 1162 aa17.66■□□□□ 0.42
USB1-207ENST00000563149 GPRASP1Q5JY77 1395 aa17.65■□□□□ 0.42
USB1-207ENST00000563149 PLXNC1O60486 1568 aa17.65■□□□□ 0.42
USB1-207ENST00000563149 AEBP2Q6ZN18 517 aaPredicted RBP17.64■□□□□ 0.41
USB1-207ENST00000563149 IQGAP3Q86VI3 1631 aa17.62■□□□□ 0.41
USB1-207ENST00000563149 WASHC2CQ9Y4E1 1318 aa17.62■□□□□ 0.41
USB1-207ENST00000563149 SHROOM2Q13796 1616 aa17.61■□□□□ 0.41
USB1-207ENST00000563149 EIF2AK4Q9P2K8 1649 aaKnown RBP17.61■□□□□ 0.41
USB1-207ENST00000563149 SYCP2Q9BX26 1530 aa17.61■□□□□ 0.41
USB1-207ENST00000563149 ERICH6Q7L0X2 663 aa17.61■□□□□ 0.41
USB1-207ENST00000563149 INSRP06213 1382 aa17.6■□□□□ 0.41
USB1-207ENST00000563149 ATP10AO60312 1499 aa17.6■□□□□ 0.41
USB1-207ENST00000563149 ARHGAP5Q13017 1502 aa17.6■□□□□ 0.41
USB1-207ENST00000563149 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.6■□□□□ 0.41
USB1-207ENST00000563149 PARD3Q8TEW0 1356 aa17.59■□□□□ 0.41
USB1-207ENST00000563149 PRDM15P57071 1507 aaPredicted RBP17.58■□□□□ 0.41
USB1-207ENST00000563149 NLRP13Q86W25 1043 aa17.58■□□□□ 0.41
USB1-207ENST00000563149 MYO5CQ9NQX4 1742 aa17.58■□□□□ 0.41
USB1-207ENST00000563149 DUOX2Q9NRD8 1548 aa17.58■□□□□ 0.41
USB1-207ENST00000563149 TTC37Q6PGP7 1564 aa17.58■□□□□ 0.4
USB1-207ENST00000563149 ZMYM4Q5VZL5 1548 aa17.58■□□□□ 0.4
USB1-207ENST00000563149 PLA2R1Q13018 1463 aa17.58■□□□□ 0.4
USB1-207ENST00000563149 PDE3BQ13370 1112 aa17.58■□□□□ 0.4
USB1-207ENST00000563149 A2MP01023 1474 aa17.57■□□□□ 0.4
USB1-207ENST00000563149 MAGI2Q86UL8 1455 aa17.57■□□□□ 0.4
USB1-207ENST00000563149 COL17A1Q9UMD9 1497 aaPredicted RBP17.57■□□□□ 0.4
USB1-207ENST00000563149 CNGB1Q14028 1251 aaPredicted RBP17.56■□□□□ 0.4
USB1-207ENST00000563149 CCDC136Q96JN2 1154 aa17.56■□□□□ 0.4
USB1-207ENST00000563149 ABCC2Q92887 1545 aa17.56■□□□□ 0.4
USB1-207ENST00000563149 ERBINQ96RT1 1412 aa17.56■□□□□ 0.4
USB1-207ENST00000563149 CHD1O14646 1710 aa17.55■□□□□ 0.4
USB1-207ENST00000563149 MYT1LQ9UL68 1186 aa17.54■□□□□ 0.4
USB1-207ENST00000563149 PER1O15534 1290 aaPredicted RBP17.53■□□□□ 0.4
USB1-207ENST00000563149 NBPF1Q3BBV0 1214 aa17.5■□□□□ 0.39
USB1-207ENST00000563149 PLCH2O75038 1416 aa17.49■□□□□ 0.39
USB1-207ENST00000563149 TESK2Q96S53 571 aa17.49■□□□□ 0.39
USB1-207ENST00000563149 RNF17Q9BXT8 1623 aaKnown RBP17.49■□□□□ 0.39
USB1-207ENST00000563149 RRP1P56182 461 aaKnown RBP17.48■□□□□ 0.39
USB1-207ENST00000563149 TMF1P82094 1093 aa17.48■□□□□ 0.39
USB1-207ENST00000563149 RGL3Q3MIN7 710 aa17.48■□□□□ 0.39
USB1-207ENST00000563149 STAC3Q96MF2 364 aa17.48■□□□□ 0.39
USB1-207ENST00000563149 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.47■□□□□ 0.39
USB1-207ENST00000563149 RCAN3Q9UKA8 241 aa17.46■□□□□ 0.39
USB1-207ENST00000563149 UHRF1BP1LA0JNW5 1464 aa17.46■□□□□ 0.39
USB1-207ENST00000563149 BLMP54132 1417 aaPredicted RBP17.46■□□□□ 0.38
USB1-207ENST00000563149 EFCAB2Q5VUJ9 269 aa17.45■□□□□ 0.38
USB1-207ENST00000563149 DISP3Q9P2K9 1392 aa17.45■□□□□ 0.38
USB1-207ENST00000563149 ABCC1P33527 1531 aa17.44■□□□□ 0.38
USB1-207ENST00000563149 RTEL1-TNFRSF6BF6WH68 1400 aa17.43■□□□□ 0.38
USB1-207ENST00000563149 ARAP3Q8WWN8 1544 aa17.42■□□□□ 0.38
USB1-207ENST00000563149 NOP58Q9Y2X3 529 aaKnown RBP17.42■□□□□ 0.38
USB1-207ENST00000563149 ZCCHC11Q5TAX3 1644 aaKnown RBP17.42■□□□□ 0.38
USB1-207ENST00000563149 PANK3Q9H999 370 aa17.41■□□□□ 0.38
USB1-207ENST00000563149 ANP32AP39687 249 aaKnown RBP17.4■□□□□ 0.38
USB1-207ENST00000563149 IQGAP1P46940 1657 aa17.39■□□□□ 0.37
USB1-207ENST00000563149 MADDQ8WXG6 1647 aa17.39■□□□□ 0.37
USB1-207ENST00000563149 ERCC6L2Q5T890 1561 aa17.39■□□□□ 0.37
USB1-207ENST00000563149 TCERG1O14776 1098 aaKnown RBP17.39■□□□□ 0.37
USB1-207ENST00000563149 TRPM2O94759 1503 aa17.39■□□□□ 0.37
USB1-207ENST00000563149 SCAPERQ9BY12 1400 aa17.39■□□□□ 0.37
USB1-207ENST00000563149 CDCA8Q53HL2 280 aa17.38■□□□□ 0.37
USB1-207ENST00000563149 CEP152O94986 1710 aa17.37■□□□□ 0.37
USB1-207ENST00000563149 SPHKAPQ2M3C7 1700 aa17.37■□□□□ 0.37
USB1-207ENST00000563149 EXOC6Q8TAG9 804 aa17.37■□□□□ 0.37
USB1-207ENST00000563149 PTPRTO14522 1441 aa17.37■□□□□ 0.37
USB1-207ENST00000563149 NEURL4Q96JN8 1562 aa17.36■□□□□ 0.37
USB1-207ENST00000563149 CC2D1BQ5T0F9 858 aaKnown RBP17.36■□□□□ 0.37
USB1-207ENST00000563149 IPO9Q96P70 1041 aaKnown RBP17.36■□□□□ 0.37
USB1-207ENST00000563149 TRAPPC8Q9Y2L5 1435 aa17.36■□□□□ 0.37
USB1-207ENST00000563149 DEPDC5O75140 1603 aa17.35■□□□□ 0.37
USB1-207ENST00000563149 WDR7Q9Y4E6 1490 aa17.35■□□□□ 0.37
USB1-207ENST00000563149 MS4A1P11836 297 aa17.35■□□□□ 0.37
USB1-207ENST00000563149 SYNMO15061 1565 aa17.35■□□□□ 0.37
USB1-207ENST00000563149 SCAF11Q99590 1463 aaKnown RBP17.34■□□□□ 0.37
USB1-207ENST00000563149 SENP3-EIF4A1A0A087X0R7 540 aa17.34■□□□□ 0.37
USB1-207ENST00000563149 CLASP1Q7Z460 1538 aa17.34■□□□□ 0.37
USB1-207ENST00000563149 KIAA1210Q9ULL0 1709 aa17.33■□□□□ 0.37
USB1-207ENST00000563149 SLC24A1O60721 1099 aa17.33■□□□□ 0.37
USB1-207ENST00000563149 SPAG9O60271 1321 aaKnown RBP17.33■□□□□ 0.36
USB1-207ENST00000563149 TET3O43151 1660 aa17.33■□□□□ 0.36
USB1-207ENST00000563149 ZFYVE16Q7Z3T8 1539 aa17.32■□□□□ 0.36
USB1-207ENST00000563149 NPC1L1Q9UHC9 1359 aa17.32■□□□□ 0.36
USB1-207ENST00000563149 KNSTRNQ9Y448 316 aa17.31■□□□□ 0.36
USB1-207ENST00000563149 SALL2Q9Y467 1007 aaPredicted RBP17.31■□□□□ 0.36
USB1-207ENST00000563149 CDCA7LQ96GN5 454 aa17.3■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms