RNA–Protein interactions for RNA: ENST00000560371.5

TRAF3-208, Transcript of TNF receptor associated factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF3, Length 7,640 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-208ENST00000560371 TRIM6-TRIM34B2RNG4 842 aa16.91■□□□□ 0.3
TRAF3-208ENST00000560371 SPRYD3Q8NCJ5 442 aa16.91■□□□□ 0.3
TRAF3-208ENST00000560371 NLRP13Q86W25 1043 aa16.91■□□□□ 0.3
TRAF3-208ENST00000560371 CCDC146Q8IYE0 955 aa16.91■□□□□ 0.3
TRAF3-208ENST00000560371 EVC2Q86UK5 1308 aa16.9■□□□□ 0.3
TRAF3-208ENST00000560371 COG3Q96JB2 828 aa16.9■□□□□ 0.3
TRAF3-208ENST00000560371 C1orf141Q5JVX7 400 aa16.9■□□□□ 0.3
TRAF3-208ENST00000560371 NOP58Q9Y2X3 529 aaKnown RBP16.89■□□□□ 0.29
TRAF3-208ENST00000560371 AMER1Q5JTC6 1135 aaPredicted RBP16.88■□□□□ 0.29
TRAF3-208ENST00000560371 PMFBP1Q8TBY8 1022 aa16.88■□□□□ 0.29
TRAF3-208ENST00000560371 ERICH6BQ5W0A0 696 aa16.87■□□□□ 0.29
TRAF3-208ENST00000560371 ST20-MTHFSA0A0A6YYL1 179 aa16.87■□□□□ 0.29
TRAF3-208ENST00000560371 PSME1Q06323 249 aa16.87■□□□□ 0.29
TRAF3-208ENST00000560371 CGNL1Q0VF96 1302 aa16.86■□□□□ 0.29
TRAF3-208ENST00000560371 DRC7Q8IY82 874 aa16.86■□□□□ 0.29
TRAF3-208ENST00000560371 CLUAP1Q96AJ1 413 aa16.85■□□□□ 0.29
TRAF3-208ENST00000560371 TEFQ10587 303 aa16.85■□□□□ 0.29
TRAF3-208ENST00000560371 MINK1Q8N4C8 1332 aaPredicted RBP16.85■□□□□ 0.29
TRAF3-208ENST00000560371 FGD5Q6ZNL6 1462 aa16.83■□□□□ 0.29
TRAF3-208ENST00000560371 MSH5O43196 834 aa16.83■□□□□ 0.29
TRAF3-208ENST00000560371 CENPJQ9HC77 1338 aaPredicted RBP16.83■□□□□ 0.28
TRAF3-208ENST00000560371 PANK3Q9H999 370 aa16.83■□□□□ 0.28
TRAF3-208ENST00000560371 PHLDB1Q86UU1 1377 aa16.83■□□□□ 0.28
TRAF3-208ENST00000560371 MEX3CQ5U5Q3 659 aaKnown RBP16.82■□□□□ 0.28
TRAF3-208ENST00000560371 HTATSF1O43719 755 aaKnown RBP16.82■□□□□ 0.28
TRAF3-208ENST00000560371 KIF15Q9NS87 1388 aa16.81■□□□□ 0.28
TRAF3-208ENST00000560371 CHAF1AQ13111 956 aaPredicted RBP16.8■□□□□ 0.28
TRAF3-208ENST00000560371 HSP90B1P14625 803 aaKnown RBP16.79■□□□□ 0.28
TRAF3-208ENST00000560371 CCDC34Q96HJ3 373 aa16.79■□□□□ 0.28
TRAF3-208ENST00000560371 RRP7AQ9Y3A4 280 aaKnown RBP16.79■□□□□ 0.28
TRAF3-208ENST00000560371 SYTL4Q96C24 671 aaPredicted RBP16.79■□□□□ 0.28
TRAF3-208ENST00000560371 ATF3P18847 181 aa16.79■□□□□ 0.28
TRAF3-208ENST00000560371 TTC5Q8N0Z6 440 aa16.79■□□□□ 0.28
TRAF3-208ENST00000560371 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.78■□□□□ 0.28
TRAF3-208ENST00000560371 TOMM22Q9NS69 142 aa16.78■□□□□ 0.28
TRAF3-208ENST00000560371 L1TD1Q5T7N2 865 aaKnown RBP16.77■□□□□ 0.28
TRAF3-208ENST00000560371 GBP4Q96PP9 640 aa16.77■□□□□ 0.28
TRAF3-208ENST00000560371 KIAA2012Q0VF49 1180 aa16.77■□□□□ 0.28
TRAF3-208ENST00000560371 RUSC2Q8N2Y8 1516 aa16.77■□□□□ 0.28
TRAF3-208ENST00000560371 ELL2O00472 640 aaPredicted RBP16.77■□□□□ 0.27
TRAF3-208ENST00000560371 PDE3BQ13370 1112 aa16.77■□□□□ 0.27
TRAF3-208ENST00000560371 NEXNQ0ZGT2 675 aa16.76■□□□□ 0.27
TRAF3-208ENST00000560371 NGEFQ8N5V2 710 aa16.76■□□□□ 0.27
TRAF3-208ENST00000560371 RAD54L2Q9Y4B4 1467 aa16.76■□□□□ 0.27
TRAF3-208ENST00000560371 MYBBP1AQ9BQG0 1328 aaKnown RBP16.74■□□□□ 0.27
TRAF3-208ENST00000560371 MFAP1P55081 439 aaKnown RBP16.74■□□□□ 0.27
TRAF3-208ENST00000560371 NAP1L5Q96NT1 182 aaPredicted RBP16.74■□□□□ 0.27
TRAF3-208ENST00000560371 MYOM3Q5VTT5 1437 aa16.74■□□□□ 0.27
TRAF3-208ENST00000560371 RASSF8Q8NHQ8 419 aa16.74■□□□□ 0.27
TRAF3-208ENST00000560371 MSNP26038 577 aaKnown RBP16.73■□□□□ 0.27
TRAF3-208ENST00000560371 TCERG1O14776 1098 aaKnown RBP16.72■□□□□ 0.27
TRAF3-208ENST00000560371 C9orf78Q9NZ63 289 aaPredicted RBP16.72■□□□□ 0.27
TRAF3-208ENST00000560371 USP47Q96K76 1375 aa16.72■□□□□ 0.27
TRAF3-208ENST00000560371 PTMSP20962 102 aa16.71■□□□□ 0.27
TRAF3-208ENST00000560371 PDE4CQ08493 712 aa16.71■□□□□ 0.27
TRAF3-208ENST00000560371 EIF2S2P20042 333 aaKnown RBP16.71■□□□□ 0.27
TRAF3-208ENST00000560371 SYAP1Q96A49 352 aaPredicted RBP16.71■□□□□ 0.27
TRAF3-208ENST00000560371 SLKQ9H2G2 1235 aaPredicted RBP16.7■□□□□ 0.26
TRAF3-208ENST00000560371 AQRO60306 1485 aaKnown RBP eCLIP16.7■□□□□ 0.264e-6■■■■■ 31
TRAF3-208ENST00000560371 KIF3AQ9Y496 699 aa16.7■□□□□ 0.26
TRAF3-208ENST00000560371 VPS53Q5VIR6 699 aa16.7■□□□□ 0.26
TRAF3-208ENST00000560371 BCL2L13Q9BXK5 485 aa16.69■□□□□ 0.26
TRAF3-208ENST00000560371 CUX1P39880 1505 aa16.69■□□□□ 0.26
TRAF3-208ENST00000560371 MARCH6O60337 910 aa16.69■□□□□ 0.26
TRAF3-208ENST00000560371 LRRFIP1Q32MZ4 808 aaKnown RBP16.69■□□□□ 0.26
TRAF3-208ENST00000560371 ARHGAP5Q13017 1502 aa16.68■□□□□ 0.26
TRAF3-208ENST00000560371 RILPL2Q969X0 211 aa16.68■□□□□ 0.26
TRAF3-208ENST00000560371 KIF16BQ96L93 1317 aa16.68■□□□□ 0.26
TRAF3-208ENST00000560371 DHX57Q6P158 1386 aaKnown RBP16.68■□□□□ 0.26
TRAF3-208ENST00000560371 DIAPH1O60610 1272 aaKnown RBP16.67■□□□□ 0.26
TRAF3-208ENST00000560371 ANO8Q9HCE9 1232 aaPredicted RBP16.67■□□□□ 0.26
TRAF3-208ENST00000560371 TPM4P67936 248 aa16.67■□□□□ 0.26
TRAF3-208ENST00000560371 NOL10Q9BSC4 688 aaKnown RBP16.67■□□□□ 0.26
TRAF3-208ENST00000560371 IGF1RP08069 1367 aa16.67■□□□□ 0.26
TRAF3-208ENST00000560371 ST18O60284 1047 aa16.66■□□□□ 0.26
TRAF3-208ENST00000560371 RAPGEF4Q8WZA2 1011 aa16.66■□□□□ 0.26
TRAF3-208ENST00000560371 DDX58O95786 925 aaKnown RBP16.66■□□□□ 0.26
TRAF3-208ENST00000560371 CSPP1Q1MSJ5 1256 aa16.66■□□□□ 0.26
TRAF3-208ENST00000560371 NOL8Q76FK4 1167 aaKnown RBP16.66■□□□□ 0.26
TRAF3-208ENST00000560371 VPS37DQ86XT2 251 aa16.66■□□□□ 0.26
TRAF3-208ENST00000560371 E9PSI1 815 aa16.65■□□□□ 0.26
TRAF3-208ENST00000560371 PHF23Q9BUL5 403 aaPredicted RBP16.65■□□□□ 0.26
TRAF3-208ENST00000560371 ANKRD45Q5TZF3 282 aa16.65■□□□□ 0.26
TRAF3-208ENST00000560371 NECTIN2Q92692 538 aa16.65■□□□□ 0.26
TRAF3-208ENST00000560371 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.65■□□□□ 0.26
TRAF3-208ENST00000560371 TRIM34Q9BYJ4 488 aa16.64■□□□□ 0.25
TRAF3-208ENST00000560371 AMOTL1Q8IY63 956 aa16.64■□□□□ 0.25
TRAF3-208ENST00000560371 GZF1Q9H116 711 aaPredicted RBP16.64■□□□□ 0.25
TRAF3-208ENST00000560371 SF3A1Q15459 793 aaKnown RBP16.63■□□□□ 0.25
TRAF3-208ENST00000560371 ZNF644Q9H582 1327 aaPredicted RBP16.63■□□□□ 0.25
TRAF3-208ENST00000560371 ZKSCAN2Q63HK3 967 aa16.63■□□□□ 0.25
TRAF3-208ENST00000560371 AKAP17AQ02040 695 aaKnown RBP16.63■□□□□ 0.25
TRAF3-208ENST00000560371 GRIN2BQ13224 1484 aa16.63■□□□□ 0.25
TRAF3-208ENST00000560371 STAC3Q96MF2 364 aa16.63■□□□□ 0.25
TRAF3-208ENST00000560371 MIA2Q96PC5 1412 aa16.62■□□□□ 0.25
TRAF3-208ENST00000560371 CREBRFQ8IUR6 639 aa16.62■□□□□ 0.25
TRAF3-208ENST00000560371 KRI1Q8N9T8 703 aaKnown RBP16.62■□□□□ 0.25
TRAF3-208ENST00000560371 NOC3LQ8WTT2 800 aaKnown RBP16.62■□□□□ 0.25
TRAF3-208ENST00000560371 RIPK4P57078 832 aa16.62■□□□□ 0.25
TRAF3-208ENST00000560371 APAF1O14727 1248 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 131.6 ms