RNA–Protein interactions for RNA: ENST00000560349.1

CARMIL3-203, Transcript of capping protein regulator and myosin 1 linker 3, humanhuman

TSL 1 (best)

Gene CARMIL3, Length 2,664 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CARMIL3-203ENST00000560349 CCDC144AA2RUR9 1427 aa19.72■□□□□ 0.75
CARMIL3-203ENST00000560349 ERBINQ96RT1 1412 aa19.72■□□□□ 0.75
CARMIL3-203ENST00000560349 CNGB1Q14028 1251 aaPredicted RBP19.71■□□□□ 0.75
CARMIL3-203ENST00000560349 ARAP3Q8WWN8 1544 aa19.7■□□□□ 0.74
CARMIL3-203ENST00000560349 KIF3BO15066 747 aa19.69■□□□□ 0.74
CARMIL3-203ENST00000560349 USP47Q96K76 1375 aa19.69■□□□□ 0.74
CARMIL3-203ENST00000560349 CD109Q6YHK3 1445 aa19.68■□□□□ 0.74
CARMIL3-203ENST00000560349 SPATA31E1Q6ZUB1 1445 aa19.68■□□□□ 0.74
CARMIL3-203ENST00000560349 ATP7AQ04656 1500 aa19.68■□□□□ 0.74
CARMIL3-203ENST00000560349 CCDC7Q96M83 1385 aa19.67■□□□□ 0.74
CARMIL3-203ENST00000560349 IQGAP3Q86VI3 1631 aa19.67■□□□□ 0.74
CARMIL3-203ENST00000560349 CARD11Q9BXL7 1154 aa19.67■□□□□ 0.74
CARMIL3-203ENST00000560349 KIF7Q2M1P5 1343 aa19.67■□□□□ 0.74
CARMIL3-203ENST00000560349 RTEL1-TNFRSF6BF6WH68 1400 aa19.64■□□□□ 0.73
CARMIL3-203ENST00000560349 MAGI2Q86UL8 1455 aa19.64■□□□□ 0.73
CARMIL3-203ENST00000560349 INO80Q9ULG1 1556 aaPredicted RBP19.63■□□□□ 0.73
CARMIL3-203ENST00000560349 RAPGEF3O95398 923 aa19.62■□□□□ 0.73
CARMIL3-203ENST00000560349 NBPF1Q3BBV0 1214 aa19.61■□□□□ 0.73
CARMIL3-203ENST00000560349 ROCK2O75116 1388 aaKnown RBP19.6■□□□□ 0.73
CARMIL3-203ENST00000560349 UHRF1BP1Q6BDS2 1440 aa19.6■□□□□ 0.73
CARMIL3-203ENST00000560349 CNTLNQ9NXG0 1405 aa19.59■□□□□ 0.73
CARMIL3-203ENST00000560349 A2MP01023 1474 aa19.59■□□□□ 0.73
CARMIL3-203ENST00000560349 RALGAPBQ86X10 1494 aa19.59■□□□□ 0.73
CARMIL3-203ENST00000560349 ST20-MTHFSA0A0A6YYL1 179 aa19.59■□□□□ 0.73
CARMIL3-203ENST00000560349 BCORL1Q5H9F3 1711 aa19.58■□□□□ 0.73
CARMIL3-203ENST00000560349 KDM5CP41229 1560 aa19.57■□□□□ 0.72
CARMIL3-203ENST00000560349 E9PCH4 1651 aa19.57■□□□□ 0.72
CARMIL3-203ENST00000560349 ZNF518AQ6AHZ1 1483 aa19.56■□□□□ 0.72
CARMIL3-203ENST00000560349 DHX29Q7Z478 1369 aaKnown RBP19.56■□□□□ 0.72
CARMIL3-203ENST00000560349 KIDINS220Q9ULH0 1771 aa19.56■□□□□ 0.72
CARMIL3-203ENST00000560349 CCDC184Q52MB2 194 aa19.56■□□□□ 0.72
CARMIL3-203ENST00000560349 PRAG1Q86YV5 1406 aa19.55■□□□□ 0.72
CARMIL3-203ENST00000560349 CCER2I3L3R5 266 aa19.55■□□□□ 0.72
CARMIL3-203ENST00000560349 GGT6Q6P531 493 aa19.55■□□□□ 0.72
CARMIL3-203ENST00000560349 ATP10AO60312 1499 aa19.54■□□□□ 0.72
CARMIL3-203ENST00000560349 POGZQ7Z3K3 1410 aa19.53■□□□□ 0.72
CARMIL3-203ENST00000560349 KANK1Q14678 1352 aa19.53■□□□□ 0.72
CARMIL3-203ENST00000560349 RIMBP3CA6NJZ7 1639 aa19.52■□□□□ 0.72
CARMIL3-203ENST00000560349 RIMBP3BA6NNM3 1639 aa19.52■□□□□ 0.72
CARMIL3-203ENST00000560349 RIMBP3Q9UFD9 1639 aa19.52■□□□□ 0.72
CARMIL3-203ENST00000560349 UGGT1Q9NYU2 1555 aa19.5■□□□□ 0.71
CARMIL3-203ENST00000560349 DEPDC5O75140 1603 aa19.5■□□□□ 0.71
CARMIL3-203ENST00000560349 MROH1Q8NDA8 1641 aa19.49■□□□□ 0.71
CARMIL3-203ENST00000560349 PRKRIP1Q9H875 184 aaPredicted RBP19.49■□□□□ 0.71
CARMIL3-203ENST00000560349 FAM69CQ0P6D2 419 aa19.48■□□□□ 0.71
CARMIL3-203ENST00000560349 TRPM1Q7Z4N2 1603 aa19.47■□□□□ 0.71
CARMIL3-203ENST00000560349 CLTCL1P53675 1640 aa19.46■□□□□ 0.71
CARMIL3-203ENST00000560349 TET3O43151 1660 aa19.45■□□□□ 0.7
CARMIL3-203ENST00000560349 PRDM15P57071 1507 aaPredicted RBP19.45■□□□□ 0.7
CARMIL3-203ENST00000560349 SPHKAPQ2M3C7 1700 aa19.45■□□□□ 0.7
CARMIL3-203ENST00000560349 FRMPD1Q5SYB0 1578 aa19.44■□□□□ 0.7
CARMIL3-203ENST00000560349 TRPM2O94759 1503 aa19.44■□□□□ 0.7
CARMIL3-203ENST00000560349 CFAP65Q6ZU64 1925 aaKnown RBP19.44■□□□□ 0.7
CARMIL3-203ENST00000560349 POLR1AO95602 1720 aaPredicted RBP19.44■□□□□ 0.7
CARMIL3-203ENST00000560349 HECW2Q9P2P5 1572 aa19.44■□□□□ 0.7
CARMIL3-203ENST00000560349 CHGAP10645 457 aaKnown RBP19.43■□□□□ 0.7
CARMIL3-203ENST00000560349 VWDEQ8N2E2 1590 aa19.43■□□□□ 0.7
CARMIL3-203ENST00000560349 CFAP74Q9C0B2 1584 aa19.43■□□□□ 0.7
CARMIL3-203ENST00000560349 ABCA6Q8N139 1617 aa19.43■□□□□ 0.7
CARMIL3-203ENST00000560349 SUPT16HQ9Y5B9 1047 aaKnown RBP19.43■□□□□ 0.7
CARMIL3-203ENST00000560349 FAM9BQ8IZU0 186 aa19.42■□□□□ 0.7
CARMIL3-203ENST00000560349 PTPRTO14522 1441 aa19.42■□□□□ 0.7
CARMIL3-203ENST00000560349 CEP152O94986 1710 aa19.42■□□□□ 0.7
CARMIL3-203ENST00000560349 HNRNPUQ00839 825 aaKnown RBP eCLIP19.41■□□□□ 0.7
CARMIL3-203ENST00000560349 MRS2Q9HD23 443 aa19.41■□□□□ 0.7
CARMIL3-203ENST00000560349 MLH3Q9UHC1 1453 aa19.41■□□□□ 0.7
CARMIL3-203ENST00000560349 EIF2AK4Q9P2K8 1649 aaKnown RBP19.41■□□□□ 0.7
CARMIL3-203ENST00000560349 YEATS2Q9ULM3 1422 aa19.4■□□□□ 0.7
CARMIL3-203ENST00000560349 PPRC1Q5VV67 1664 aaKnown RBP19.4■□□□□ 0.7
CARMIL3-203ENST00000560349 NEO1Q92859 1461 aa19.39■□□□□ 0.7
CARMIL3-203ENST00000560349 WASHC2CQ9Y4E1 1318 aa19.39■□□□□ 0.69
CARMIL3-203ENST00000560349 SENP3-EIF4A1A0A087X0R7 540 aa19.39■□□□□ 0.69
CARMIL3-203ENST00000560349 SENP3Q9H4L4 574 aaPredicted RBP19.39■□□□□ 0.69
CARMIL3-203ENST00000560349 TSPOAP1O95153 1857 aa19.39■□□□□ 0.69
CARMIL3-203ENST00000560349 EFCAB6Q5THR3 1501 aa19.38■□□□□ 0.69
CARMIL3-203ENST00000560349 MAP3K4Q9Y6R4 1608 aa19.36■□□□□ 0.69
CARMIL3-203ENST00000560349 GPRASP1Q5JY77 1395 aa19.36■□□□□ 0.69
CARMIL3-203ENST00000560349 DISP3Q9P2K9 1392 aa19.36■□□□□ 0.69
CARMIL3-203ENST00000560349 NPATQ14207 1427 aa19.35■□□□□ 0.69
CARMIL3-203ENST00000560349 TESK2Q96S53 571 aa19.35■□□□□ 0.69
CARMIL3-203ENST00000560349 ADGRF5Q8IZF2 1346 aa19.34■□□□□ 0.69
CARMIL3-203ENST00000560349 MADDQ8WXG6 1647 aa19.33■□□□□ 0.69
CARMIL3-203ENST00000560349 NUTM2DQ5VT03 806 aaPredicted RBP19.33■□□□□ 0.69
CARMIL3-203ENST00000560349 DIP2CQ9Y2E4 1556 aa19.33■□□□□ 0.68
CARMIL3-203ENST00000560349 CFAP70Q5T0N1 1121 aa19.32■□□□□ 0.68
CARMIL3-203ENST00000560349 RICTORQ6R327 1708 aa19.32■□□□□ 0.68
CARMIL3-203ENST00000560349 RNF17Q9BXT8 1623 aaKnown RBP19.32■□□□□ 0.68
CARMIL3-203ENST00000560349 DIP2BQ9P265 1576 aa19.31■□□□□ 0.68
CARMIL3-203ENST00000560349 ARID4BQ4LE39 1312 aaPredicted RBP19.31■□□□□ 0.68
CARMIL3-203ENST00000560349 MROH2AA6NES4 1674 aa19.29■□□□□ 0.68
CARMIL3-203ENST00000560349 BCL11AQ9H165 835 aa19.29■□□□□ 0.68
CARMIL3-203ENST00000560349 ABCC3O15438 1527 aa19.28■□□□□ 0.68
CARMIL3-203ENST00000560349 BCANQ96GW7 911 aa19.27■□□□□ 0.67
CARMIL3-203ENST00000560349 LMTK2Q8IWU2 1503 aa19.26■□□□□ 0.67
CARMIL3-203ENST00000560349 COL17A1Q9UMD9 1497 aaPredicted RBP19.26■□□□□ 0.67
CARMIL3-203ENST00000560349 NOS1P29475 1434 aa19.25■□□□□ 0.67
CARMIL3-203ENST00000560349 GLI2P10070 1586 aa19.25■□□□□ 0.67
CARMIL3-203ENST00000560349 TMF1P82094 1093 aa19.25■□□□□ 0.67
CARMIL3-203ENST00000560349 MLECQ14165 292 aa19.24■□□□□ 0.67
CARMIL3-203ENST00000560349 PRKCSHP14314 528 aaPredicted RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms