RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 WBP1LQ9NX94 342 aa14.8□□□□□ -0.04
SPG11-213ENST00000558988 DCAF1Q9Y4B6 1507 aa14.8□□□□□ -0.04
SPG11-213ENST00000558988 PPP1R3GB7ZBB8 358 aa14.76□□□□□ -0.05
SPG11-213ENST00000558988 EVI5O60447 810 aa14.75□□□□□ -0.05
SPG11-213ENST00000558988 LAPTM4BQ86VI4 370 aa14.73□□□□□ -0.05
SPG11-213ENST00000558988 COL9A1P20849 921 aa14.72□□□□□ -0.05
SPG11-213ENST00000558988 PPP1R15BQ5SWA1 713 aa14.72□□□□□ -0.05
SPG11-213ENST00000558988 ZNF787Q6DD87 383 aa14.72□□□□□ -0.05
SPG11-213ENST00000558988 ZFRQ96KR1 1074 aaKnown RBP14.72□□□□□ -0.05
SPG11-213ENST00000558988 NRG2O14511 850 aaPredicted RBP14.71□□□□□ -0.05
SPG11-213ENST00000558988 CRISPLD2Q9H0B8 497 aa14.69□□□□□ -0.06
SPG11-213ENST00000558988 ZNF775Q96BV0 537 aaPredicted RBP14.67□□□□□ -0.06
SPG11-213ENST00000558988 PRKD2Q9BZL6 878 aa14.67□□□□□ -0.06
SPG11-213ENST00000558988 KIAA1468Q9P260 1216 aa14.67□□□□□ -0.06
SPG11-213ENST00000558988 PKD2Q13563 968 aa14.66□□□□□ -0.06
SPG11-213ENST00000558988 SEPT9Q9UHD8 586 aaPredicted RBP14.62□□□□□ -0.07
SPG11-213ENST00000558988 PCDHGA10Q9Y5H3 936 aa14.62□□□□□ -0.07
SPG11-213ENST00000558988 TSR3Q9UJK0 312 aaKnown RBP14.6□□□□□ -0.07
SPG11-213ENST00000558988 HPS5Q9UPZ3 1129 aa14.59□□□□□ -0.07
SPG11-213ENST00000558988 SHROOM4Q9ULL8 1493 aa14.58□□□□□ -0.08
SPG11-213ENST00000558988 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.56□□□□□ -0.08
SPG11-213ENST00000558988 MAP3K9P80192 1104 aa14.55□□□□□ -0.08
SPG11-213ENST00000558988 NCKAP5LQ9HCH0 1330 aa14.54□□□□□ -0.08
SPG11-213ENST00000558988 CC2D2AQ9P2K1 1620 aa14.54□□□□□ -0.08
SPG11-213ENST00000558988 ONECUT3O60422 494 aaPredicted RBP14.53□□□□□ -0.08
SPG11-213ENST00000558988 HS6ST3Q8IZP7 471 aa14.52□□□□□ -0.09
SPG11-213ENST00000558988 LRCH3Q96II8 777 aa14.52□□□□□ -0.09
SPG11-213ENST00000558988 V9GY48 417 aaPredicted RBP14.52□□□□□ -0.09
SPG11-213ENST00000558988 FAM98CQ17RN3 349 aaKnown RBP14.51□□□□□ -0.09
SPG11-213ENST00000558988 EIF4G1Q04637 1599 aaKnown RBP14.51□□□□□ -0.09
SPG11-213ENST00000558988 PDE4AP27815 886 aa14.5□□□□□ -0.09
SPG11-213ENST00000558988 TYW1BQ6NUM6 668 aa14.5□□□□□ -0.09
SPG11-213ENST00000558988 FBXW7Q969H0 707 aa14.5□□□□□ -0.09
SPG11-213ENST00000558988 CECR2Q9BXF3 1484 aa14.5□□□□□ -0.09
SPG11-213ENST00000558988 TJAP1Q5JTD0 557 aa14.49□□□□□ -0.09
SPG11-213ENST00000558988 PDZRN3Q9UPQ7 1066 aa14.49□□□□□ -0.09
SPG11-213ENST00000558988 PPP1R18Q6NYC8 613 aa14.48□□□□□ -0.09
SPG11-213ENST00000558988 TRIM6-TRIM34B2RNG4 842 aa14.45□□□□□ -0.1
SPG11-213ENST00000558988 PHF14O94880 888 aa14.45□□□□□ -0.1
SPG11-213ENST00000558988 PPP4CP60510 307 aa14.42□□□□□ -0.1
SPG11-213ENST00000558988 C6orf132Q5T0Z8 1188 aa14.42□□□□□ -0.1
SPG11-213ENST00000558988 LARP6Q9BRS8 491 aaKnown RBP14.41□□□□□ -0.1
SPG11-213ENST00000558988 EMILIN3Q9NT22 766 aa14.41□□□□□ -0.1
SPG11-213ENST00000558988 NKX1-1Q15270 411 aaPredicted RBP14.39□□□□□ -0.11
SPG11-213ENST00000558988 DDX27Q96GQ7 796 aaKnown RBP14.38□□□□□ -0.11
SPG11-213ENST00000558988 MTRQ99707 1265 aa14.38□□□□□ -0.11
SPG11-213ENST00000558988 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.38□□□□□ -0.11
SPG11-213ENST00000558988 IL21Q9HBE4 155 aa14.36□□□□□ -0.11
SPG11-213ENST00000558988 CHGAP10645 457 aaKnown RBP14.33□□□□□ -0.12
SPG11-213ENST00000558988 ZNF516Q92618 1163 aa14.33□□□□□ -0.12
SPG11-213ENST00000558988 EPAS1Q99814 870 aa14.3□□□□□ -0.12
SPG11-213ENST00000558988 RYDENQ9NUL5 291 aaKnown RBP14.3□□□□□ -0.12
SPG11-213ENST00000558988 POTECB2RU33 542 aa14.29□□□□□ -0.12
SPG11-213ENST00000558988 MFSD10Q14728 455 aa14.29□□□□□ -0.12
SPG11-213ENST00000558988 RBM33Q96EV2 1170 aaKnown RBP14.28□□□□□ -0.12
SPG11-213ENST00000558988 SAMD7Q7Z3H4 446 aa14.27□□□□□ -0.13
SPG11-213ENST00000558988 TSKSQ9UJT2 592 aa14.27□□□□□ -0.13
SPG11-213ENST00000558988 PACS2Q86VP3 889 aa14.26□□□□□ -0.13
SPG11-213ENST00000558988 NKX2-3Q8TAU0 364 aa14.26□□□□□ -0.13
SPG11-213ENST00000558988 DNAJC5Q9H3Z4 198 aa14.25□□□□□ -0.13
SPG11-213ENST00000558988 MYT1Q01538 1121 aa14.23□□□□□ -0.13
SPG11-213ENST00000558988 TRIM67Q6ZTA4 783 aa14.22□□□□□ -0.13
SPG11-213ENST00000558988 SMAPO00193 183 aa14.2□□□□□ -0.14
SPG11-213ENST00000558988 PKDCCQ504Y2 493 aa14.19□□□□□ -0.14
SPG11-213ENST00000558988 TREML4Q6UXN2 200 aa14.19□□□□□ -0.14
SPG11-213ENST00000558988 LCE2AQ5TA79 106 aaPredicted RBP14.17□□□□□ -0.14
SPG11-213ENST00000558988 GGCXP38435 758 aa14.16□□□□□ -0.14
SPG11-213ENST00000558988 DGAT1O75907 488 aa14.14□□□□□ -0.15
SPG11-213ENST00000558988 APLP1P51693 650 aa14.14□□□□□ -0.15
SPG11-213ENST00000558988 DDX12PQ92771 950 aa14.13□□□□□ -0.15
SPG11-213ENST00000558988 TSR1Q2NL82 804 aaKnown RBP14.12□□□□□ -0.15
SPG11-213ENST00000558988 TMUB1Q9BVT8 246 aa14.1□□□□□ -0.15
SPG11-213ENST00000558988 C3orf80F5H4A9 247 aa14.09□□□□□ -0.15
SPG11-213ENST00000558988 FAM198AQ9UFP1 575 aa14.09□□□□□ -0.15
SPG11-213ENST00000558988 DPYSL4O14531 572 aa14.08□□□□□ -0.16
SPG11-213ENST00000558988 RNF40O75150 1001 aa14.08□□□□□ -0.16
SPG11-213ENST00000558988 SLC19A1P41440 591 aa14.07□□□□□ -0.16
SPG11-213ENST00000558988 COPS2P61201 443 aa14.07□□□□□ -0.16
SPG11-213ENST00000558988 EMID1Q96A84 441 aaPredicted RBP14.07□□□□□ -0.16
SPG11-213ENST00000558988 CDCA7LQ96GN5 454 aa14.07□□□□□ -0.16
SPG11-213ENST00000558988 MAP3K7O43318 606 aa14.06□□□□□ -0.16
SPG11-213ENST00000558988 EN1Q05925 392 aaPredicted RBP14.06□□□□□ -0.16
SPG11-213ENST00000558988 SMARCA4P51532 1647 aa14.05□□□□□ -0.16
SPG11-213ENST00000558988 GTPBP6O43824 516 aaPredicted RBP14.04□□□□□ -0.16
SPG11-213ENST00000558988 TATDN2Q93075 761 aa14.04□□□□□ -0.16
SPG11-213ENST00000558988 PRSS12P56730 875 aa14.03□□□□□ -0.16
SPG11-213ENST00000558988 ATAD2BQ9ULI0 1458 aa14.03□□□□□ -0.16
SPG11-213ENST00000558988 NCAPD3P42695 1498 aa14.02□□□□□ -0.16
SPG11-213ENST00000558988 NBR1Q14596 966 aa14.02□□□□□ -0.17
SPG11-213ENST00000558988 PNMA3Q9UL41 463 aa14.02□□□□□ -0.17
SPG11-213ENST00000558988 PRR20EP86478 221 aa14.01□□□□□ -0.17
SPG11-213ENST00000558988 PRR20CP86479 221 aa14.01□□□□□ -0.17
SPG11-213ENST00000558988 PRR20DP86480 221 aa14.01□□□□□ -0.17
SPG11-213ENST00000558988 PRR20BP86481 221 aa14.01□□□□□ -0.17
SPG11-213ENST00000558988 PRR20AP86496 221 aa14.01□□□□□ -0.17
SPG11-213ENST00000558988 FAM187AA6NFU0 413 aa14□□□□□ -0.17
SPG11-213ENST00000558988 CAMK2BQ13554 666 aa14□□□□□ -0.17
SPG11-213ENST00000558988 SPRYD7Q5W111 196 aa14□□□□□ -0.17
SPG11-213ENST00000558988 SMARCA2P51531 1590 aa14□□□□□ -0.17
SPG11-213ENST00000558988 RNF223E7ERA6 249 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms