RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 AEBP2Q6ZN18 517 aaPredicted RBP38.67■■■■□ 3.78
SPG11-213ENST00000558988 CHIC1Q5VXU3 224 aa36.05■■■■□ 3.36
SPG11-213ENST00000558988 SENP3Q9H4L4 574 aaPredicted RBP33.06■■■□□ 2.88
SPG11-213ENST00000558988 PHF23Q9BUL5 403 aaPredicted RBP32.54■■■□□ 2.8
SPG11-213ENST00000558988 FOXD1Q16676 465 aa30.99■■■□□ 2.55
SPG11-213ENST00000558988 POTEDQ86YR6 584 aa30.27■■■□□ 2.44
SPG11-213ENST00000558988 MSH5O43196 834 aa29.29■■■□□ 2.28
SPG11-213ENST00000558988 PIAS4Q8N2W9 510 aaPredicted RBP28.71■■■□□ 2.19
SPG11-213ENST00000558988 PPP6R1Q9UPN7 881 aa28.28■■■□□ 2.12
SPG11-213ENST00000558988 ADRA2BP18089 450 aa28.14■■■□□ 2.1
SPG11-213ENST00000558988 PLPPR3Q6T4P5 718 aa28.11■■■□□ 2.09
SPG11-213ENST00000558988 MAPK8IP2Q13387 824 aaPredicted RBP26.15■■□□□ 1.78
SPG11-213ENST00000558988 DMRT2Q9Y5R5 561 aa26.08■■□□□ 1.77
SPG11-213ENST00000558988 CACNB1Q02641 598 aaPredicted RBP25.77■■□□□ 1.72
SPG11-213ENST00000558988 SCAF1Q9H7N4 1312 aaKnown RBP25.64■■□□□ 1.7
SPG11-213ENST00000558988 DCAF8L1A6NGE4 600 aa25.12■■□□□ 1.61
SPG11-213ENST00000558988 RNF39Q9H2S5 420 aa24.94■■□□□ 1.58
SPG11-213ENST00000558988 HOXD11P31277 338 aaPredicted RBP24.74■■□□□ 1.55
SPG11-213ENST00000558988 PPP4R3CPQ6ZMV5 832 aa24.55■■□□□ 1.52
SPG11-213ENST00000558988 C1QBPQ07021 282 aaKnown RBP24.49■■□□□ 1.51
SPG11-213ENST00000558988 RNF216Q9NWF9 866 aaPredicted RBP24.29■■□□□ 1.48
SPG11-213ENST00000558988 CNKSR2Q8WXI2 1034 aa24.28■■□□□ 1.48
SPG11-213ENST00000558988 DNAJC5BQ9UF47 199 aa24■■□□□ 1.43
SPG11-213ENST00000558988 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.6■■□□□ 1.37
SPG11-213ENST00000558988 POTEHQ6S545 545 aa23.52■■□□□ 1.36
SPG11-213ENST00000558988 NCBP3Q53F19 620 aaKnown RBP23.28■■□□□ 1.32
SPG11-213ENST00000558988 DSG3P32926 999 aa23.05■■□□□ 1.28
SPG11-213ENST00000558988 U3KPZ7 1027 aaPredicted RBP23■■□□□ 1.27
SPG11-213ENST00000558988 NPM3O75607 178 aaKnown RBP22.99■■□□□ 1.27
SPG11-213ENST00000558988 SPINK5Q9NQ38 1064 aaPredicted RBP22.99■■□□□ 1.27
SPG11-213ENST00000558988 CAPN15O75808 1086 aa22.98■■□□□ 1.27
SPG11-213ENST00000558988 ABCB7O75027 752 aa22.39■■□□□ 1.17
SPG11-213ENST00000558988 TRHP20396 242 aaPredicted RBP22.39■■□□□ 1.17
SPG11-213ENST00000558988 ZNF219Q9P2Y4 722 aaPredicted RBP22.24■■□□□ 1.15
SPG11-213ENST00000558988 SLC4A2P04920 1241 aa22.22■■□□□ 1.15
SPG11-213ENST00000558988 APLP2Q06481 763 aa22.17■■□□□ 1.14
SPG11-213ENST00000558988 RBM42Q9BTD8 480 aaKnown RBP21.95■■□□□ 1.1
SPG11-213ENST00000558988 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.94■■□□□ 1.1
SPG11-213ENST00000558988 HNRNPUL2Q1KMD3 747 aaKnown RBP21.94■■□□□ 1.1
SPG11-213ENST00000558988 CHRDL2Q6WN34 429 aa21.91■■□□□ 1.1
SPG11-213ENST00000558988 SAMD1Q6SPF0 538 aaPredicted RBP21.79■■□□□ 1.08
SPG11-213ENST00000558988 KCNA4P22459 653 aa21.73■■□□□ 1.07
SPG11-213ENST00000558988 SP7Q8TDD2 431 aaPredicted RBP21.59■■□□□ 1.05
SPG11-213ENST00000558988 POLA2Q14181 598 aa21.56■■□□□ 1.04
SPG11-213ENST00000558988 AKT1S1Q96B36 256 aa21.28■■□□□ 1
SPG11-213ENST00000558988 MYCNP04198 464 aaPredicted RBP21.25■□□□□ 0.99
SPG11-213ENST00000558988 PIP4P2Q8N4L2 257 aa21.2■□□□□ 0.98
SPG11-213ENST00000558988 REM2Q8IYK8 340 aaPredicted RBP21.12■□□□□ 0.97
SPG11-213ENST00000558988 HAX1O00165 279 aa21.08■□□□□ 0.97
SPG11-213ENST00000558988 ZBTB12Q9Y330 459 aaPredicted RBP20.96■□□□□ 0.95
SPG11-213ENST00000558988 PITPNM1O00562 1244 aa20.92■□□□□ 0.94
SPG11-213ENST00000558988 ATF5Q9Y2D1 282 aaPredicted RBP20.92■□□□□ 0.94
SPG11-213ENST00000558988 OSCARQ8IYS5 282 aa20.91■□□□□ 0.94
SPG11-213ENST00000558988 FXR2P51116 673 aaKnown RBP eCLIP20.9■□□□□ 0.94
SPG11-213ENST00000558988 EVX2Q03828 476 aa20.79■□□□□ 0.92
SPG11-213ENST00000558988 FOXD4L1Q9NU39 408 aa20.52■□□□□ 0.88
SPG11-213ENST00000558988 PRKAR2AP13861 404 aaKnown RBP20.36■□□□□ 0.85
SPG11-213ENST00000558988 SLC4A1APQ9BWU0 796 aaKnown RBP20.3■□□□□ 0.84
SPG11-213ENST00000558988 SPDYE2BA6NHP3 402 aa20.27■□□□□ 0.84
SPG11-213ENST00000558988 C19orf67A6NJJ6 358 aa20.27■□□□□ 0.84
SPG11-213ENST00000558988 SPDYE6P0CI01 402 aa20.27■□□□□ 0.84
SPG11-213ENST00000558988 SPDYE2Q495Y8 402 aa20.27■□□□□ 0.84
SPG11-213ENST00000558988 LHX8Q68G74 356 aa20.26■□□□□ 0.83
SPG11-213ENST00000558988 GABBR2O75899 941 aa20.23■□□□□ 0.83
SPG11-213ENST00000558988 CLEC11AQ9Y240 323 aa20.23■□□□□ 0.83
SPG11-213ENST00000558988 SPDYE1Q8NFV5 336 aaPredicted RBP20.16■□□□□ 0.82
SPG11-213ENST00000558988 FBLN2P98095 1184 aa20.09■□□□□ 0.81
SPG11-213ENST00000558988 ZBTB22O15209 634 aa19.98■□□□□ 0.79
SPG11-213ENST00000558988 CHADLQ6NUI6 762 aa19.97■□□□□ 0.79
SPG11-213ENST00000558988 ATXN8OSP0DMR3 200 aa19.95■□□□□ 0.78
SPG11-213ENST00000558988 ZNF692Q9BU19 519 aaPredicted RBP19.91■□□□□ 0.78
SPG11-213ENST00000558988 SSUH2Q9Y2M2 353 aa19.9■□□□□ 0.78
SPG11-213ENST00000558988 MKRN4PQ13434 485 aaPredicted RBP19.88■□□□□ 0.77
SPG11-213ENST00000558988 POTEIP0CG38 1075 aa19.81■□□□□ 0.76
SPG11-213ENST00000558988 PLSCR2Q9NRY7 297 aa19.79■□□□□ 0.76
SPG11-213ENST00000558988 PRR29P0C7W0 189 aa19.73■□□□□ 0.75
SPG11-213ENST00000558988 CD44P16070 742 aaKnown RBP19.65■□□□□ 0.74
SPG11-213ENST00000558988 PABPN1Q86U42 306 aaKnown RBP eCLIP19.6■□□□□ 0.73
SPG11-213ENST00000558988 FARP1Q9Y4F1 1045 aaPredicted RBP19.53■□□□□ 0.72
SPG11-213ENST00000558988 CLCN6P51797 869 aa19.47■□□□□ 0.71
SPG11-213ENST00000558988 DCBLD2Q96PD2 775 aa19.46■□□□□ 0.71
SPG11-213ENST00000558988 ZNF579Q8NAF0 562 aaKnown RBP19.28■□□□□ 0.68
SPG11-213ENST00000558988 OTUD5Q96G74 571 aa19.25■□□□□ 0.67
SPG11-213ENST00000558988 ZRANB1Q9UGI0 708 aa19.24■□□□□ 0.67
SPG11-213ENST00000558988 GALR2O43603 387 aaPredicted RBP19.16■□□□□ 0.66
SPG11-213ENST00000558988 POTEB2H3BUK9 544 aa19.15■□□□□ 0.66
SPG11-213ENST00000558988 POTEMA6NI47 508 aa19.13■□□□□ 0.65
SPG11-213ENST00000558988 POTEGQ6S5H5 508 aa19.04■□□□□ 0.64
SPG11-213ENST00000558988 CREBZFQ9NS37 354 aa19.04■□□□□ 0.64
SPG11-213ENST00000558988 PHF12Q96QT6 1004 aa18.92■□□□□ 0.62
SPG11-213ENST00000558988 PELP1Q8IZL8 1130 aaKnown RBP18.9■□□□□ 0.62
SPG11-213ENST00000558988 PAK3O75914 559 aaPredicted RBP18.82■□□□□ 0.6
SPG11-213ENST00000558988 STAG3Q9UJ98 1225 aa18.8■□□□□ 0.6
SPG11-213ENST00000558988 PCDH10Q9P2E7 1040 aa18.79■□□□□ 0.6
SPG11-213ENST00000558988 POTEJP0CG39 1038 aa18.73■□□□□ 0.59
SPG11-213ENST00000558988 METRNQ9UJH8 293 aa18.71■□□□□ 0.59
SPG11-213ENST00000558988 ASTLQ6HA08 431 aaPredicted RBP18.66■□□□□ 0.58
SPG11-213ENST00000558988 LCE2DQ5TA82 110 aaPredicted RBP18.62■□□□□ 0.57
SPG11-213ENST00000558988 SLC39A7Q92504 469 aa18.62■□□□□ 0.57
SPG11-213ENST00000558988 ATMINO43313 823 aaPredicted RBP18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 121.5 ms