RNA–Protein interactions for RNA: ENST00000558662.5

HMBOX1-212, Transcript of homeobox containing 1, humanhuman

TSL 5 BASIC

Gene HMBOX1, Length 1,765 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMBOX1-212ENST00000558662 VSIG10Q8N0Z9 540 aa21■□□□□ 0.95
HMBOX1-212ENST00000558662 PARD3Q8TEW0 1356 aa21■□□□□ 0.95
HMBOX1-212ENST00000558662 ISY1Q9ULR0 285 aaKnown RBP21■□□□□ 0.95
HMBOX1-212ENST00000558662 CRBNQ96SW2 442 aa20.99■□□□□ 0.95
HMBOX1-212ENST00000558662 EIF3AQ14152 1382 aaKnown RBP20.99■□□□□ 0.95
HMBOX1-212ENST00000558662 CENPJQ9HC77 1338 aaPredicted RBP20.98■□□□□ 0.95
HMBOX1-212ENST00000558662 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.98■□□□□ 0.95
HMBOX1-212ENST00000558662 MAGI3Q5TCQ9 1506 aa20.97■□□□□ 0.95
HMBOX1-212ENST00000558662 ZMYM3Q14202 1370 aa20.96■□□□□ 0.95
HMBOX1-212ENST00000558662 DAPK1P53355 1430 aa20.96■□□□□ 0.95
HMBOX1-212ENST00000558662 KIAA1107Q9UPP5 1409 aa20.95■□□□□ 0.94
HMBOX1-212ENST00000558662 SLC4A3P48751 1232 aa20.94■□□□□ 0.94
HMBOX1-212ENST00000558662 ERCC6Q03468 1493 aa20.94■□□□□ 0.94
HMBOX1-212ENST00000558662 FSD2A1L4K1 749 aa20.92■□□□□ 0.94
HMBOX1-212ENST00000558662 NAP1L5Q96NT1 182 aaPredicted RBP20.92■□□□□ 0.94
HMBOX1-212ENST00000558662 PZPP20742 1482 aa20.92■□□□□ 0.94
HMBOX1-212ENST00000558662 SLC4A1APQ9BWU0 796 aaKnown RBP20.92■□□□□ 0.94
HMBOX1-212ENST00000558662 CHIC2Q9UKJ5 165 aa20.92■□□□□ 0.94
HMBOX1-212ENST00000558662 ADGBQ8N7X0 1667 aa20.9■□□□□ 0.94
HMBOX1-212ENST00000558662 GOLGA6L3A6NEY3 463 aa20.9■□□□□ 0.94
HMBOX1-212ENST00000558662 TPM2P07951 284 aa20.9■□□□□ 0.94
HMBOX1-212ENST00000558662 POGKQ9P215 609 aa20.88■□□□□ 0.93
HMBOX1-212ENST00000558662 CLASP1Q7Z460 1538 aa20.87■□□□□ 0.93
HMBOX1-212ENST00000558662 MAPK8IP3Q9UPT6 1336 aa20.87■□□□□ 0.93
HMBOX1-212ENST00000558662 IFT140Q96RY7 1462 aa20.86■□□□□ 0.93
HMBOX1-212ENST00000558662 EPRSP07814 1512 aaKnown RBP20.85■□□□□ 0.93
HMBOX1-212ENST00000558662 ABCC5O15440 1437 aa20.85■□□□□ 0.93
HMBOX1-212ENST00000558662 MRE11P49959 708 aa20.85■□□□□ 0.93
HMBOX1-212ENST00000558662 FOXD1Q16676 465 aa20.84■□□□□ 0.93
HMBOX1-212ENST00000558662 PDCL3Q9H2J4 239 aa20.83■□□□□ 0.93
HMBOX1-212ENST00000558662 NINLQ9Y2I6 1382 aa20.81■□□□□ 0.92
HMBOX1-212ENST00000558662 ADGRL2O95490 1459 aa20.81■□□□□ 0.92
HMBOX1-212ENST00000558662 XRCC6P12956 609 aaKnown RBP eCLIP20.81■□□□□ 0.92
HMBOX1-212ENST00000558662 POLR3GLQ9BT43 218 aa20.81■□□□□ 0.92
HMBOX1-212ENST00000558662 ANTXR1Q9H6X2 564 aa20.81■□□□□ 0.92
HMBOX1-212ENST00000558662 LAMC1P11047 1609 aa20.81■□□□□ 0.92
HMBOX1-212ENST00000558662 PLIN1O60240 522 aa20.8■□□□□ 0.92
HMBOX1-212ENST00000558662 CDCA7LQ96GN5 454 aa20.8■□□□□ 0.92
HMBOX1-212ENST00000558662 ZNF608Q9ULD9 1512 aaPredicted RBP20.8■□□□□ 0.92
HMBOX1-212ENST00000558662 AAMPQ13685 434 aa20.8■□□□□ 0.92
HMBOX1-212ENST00000558662 TDRD9Q8NDG6 1382 aaKnown RBP20.79■□□□□ 0.92
HMBOX1-212ENST00000558662 CARD11Q9BXL7 1154 aa20.79■□□□□ 0.92
HMBOX1-212ENST00000558662 USP19O94966 1318 aa20.78■□□□□ 0.92
HMBOX1-212ENST00000558662 CALD1Q05682 793 aaKnown RBP20.77■□□□□ 0.92
HMBOX1-212ENST00000558662 PBRM1Q86U86 1689 aa20.77■□□□□ 0.91
HMBOX1-212ENST00000558662 TERF1P54274 439 aa20.77■□□□□ 0.91
HMBOX1-212ENST00000558662 UPF2Q9HAU5 1272 aaKnown RBP20.76■□□□□ 0.91
HMBOX1-212ENST00000558662 MAP7D2Q96T17 732 aa20.75■□□□□ 0.91
HMBOX1-212ENST00000558662 ANKRD30AQ9BXX3 1397 aa20.74■□□□□ 0.91
HMBOX1-212ENST00000558662 SCAPERQ9BY12 1400 aa20.74■□□□□ 0.91
HMBOX1-212ENST00000558662 NLRP1Q9C000 1473 aa20.74■□□□□ 0.91
HMBOX1-212ENST00000558662 KDM5DQ9BY66 1539 aa20.74■□□□□ 0.91
HMBOX1-212ENST00000558662 CEP170Q5SW79 1584 aa20.74■□□□□ 0.91
HMBOX1-212ENST00000558662 ESPNB1AK53 854 aa20.73■□□□□ 0.91
HMBOX1-212ENST00000558662 CROCC2H7BZ55 1655 aa20.73■□□□□ 0.91
HMBOX1-212ENST00000558662 PTMSP20962 102 aa20.72■□□□□ 0.91
HMBOX1-212ENST00000558662 NGEFQ8N5V2 710 aa20.72■□□□□ 0.91
HMBOX1-212ENST00000558662 MYH16Q9H6N6 1097 aa20.72■□□□□ 0.91
HMBOX1-212ENST00000558662 ITSN2Q9NZM3 1697 aa20.72■□□□□ 0.91
HMBOX1-212ENST00000558662 PER1O15534 1290 aaPredicted RBP20.72■□□□□ 0.91
HMBOX1-212ENST00000558662 MCM4P33991 863 aa20.72■□□□□ 0.91
HMBOX1-212ENST00000558662 PODXL2Q9NZ53 605 aa20.72■□□□□ 0.91
HMBOX1-212ENST00000558662 DUSP27Q5VZP5 1158 aa20.71■□□□□ 0.91
HMBOX1-212ENST00000558662 C20orf194Q5TEA3 1177 aa20.7■□□□□ 0.9
HMBOX1-212ENST00000558662 CGNL1Q0VF96 1302 aa20.7■□□□□ 0.9
HMBOX1-212ENST00000558662 CAMSAP2Q08AD1 1489 aa20.7■□□□□ 0.9
HMBOX1-212ENST00000558662 ZNF521Q96K83 1311 aa20.69■□□□□ 0.9
HMBOX1-212ENST00000558662 DDX11L8A8MPP1 907 aa20.69■□□□□ 0.9
HMBOX1-212ENST00000558662 COL17A1Q9UMD9 1497 aaPredicted RBP20.69■□□□□ 0.9
HMBOX1-212ENST00000558662 ST20-MTHFSA0A0A6YYL1 179 aa20.69■□□□□ 0.9
HMBOX1-212ENST00000558662 SKAP1Q86WV1 359 aa20.69■□□□□ 0.9
HMBOX1-212ENST00000558662 EIF4G3O43432 1585 aaKnown RBP20.68■□□□□ 0.9
HMBOX1-212ENST00000558662 CNGB1Q14028 1251 aaPredicted RBP20.68■□□□□ 0.9
HMBOX1-212ENST00000558662 GOLGA2Q08379 1002 aa20.67■□□□□ 0.9
HMBOX1-212ENST00000558662 TRPM1Q7Z4N2 1603 aa20.67■□□□□ 0.9
HMBOX1-212ENST00000558662 ADAMTS12P58397 1594 aa20.67■□□□□ 0.9
HMBOX1-212ENST00000558662 RGS3P49796 1198 aa20.67■□□□□ 0.9
HMBOX1-212ENST00000558662 CHMP5Q9NZZ3 219 aa20.67■□□□□ 0.9
HMBOX1-212ENST00000558662 TBC1D32Q96NH3 1257 aa20.66■□□□□ 0.9
HMBOX1-212ENST00000558662 PLXNC1O60486 1568 aa20.65■□□□□ 0.9
HMBOX1-212ENST00000558662 PDE3AQ14432 1141 aa20.65■□□□□ 0.9
HMBOX1-212ENST00000558662 TRIM44Q96DX7 344 aaPredicted RBP20.65■□□□□ 0.9
HMBOX1-212ENST00000558662 GPRASP1Q5JY77 1395 aa20.65■□□□□ 0.9
HMBOX1-212ENST00000558662 KIAA0586Q9BVV6 1533 aa20.65■□□□□ 0.9
HMBOX1-212ENST00000558662 TRMT2AQ8IZ69 625 aaKnown RBP20.64■□□□□ 0.9
HMBOX1-212ENST00000558662 GRPEL1Q9HAV7 217 aa20.64■□□□□ 0.9
HMBOX1-212ENST00000558662 MTERF4Q7Z6M4 381 aaKnown RBP20.63■□□□□ 0.89
HMBOX1-212ENST00000558662 NKTRP30414 1462 aaKnown RBP20.63■□□□□ 0.89
HMBOX1-212ENST00000558662 TRAK2O60296 914 aa20.62■□□□□ 0.89
HMBOX1-212ENST00000558662 ZNF326Q5BKZ1 582 aaKnown RBP20.62■□□□□ 0.89
HMBOX1-212ENST00000558662 SENP3-EIF4A1A0A087X0R7 540 aa20.62■□□□□ 0.89
HMBOX1-212ENST00000558662 PKD2Q13563 968 aa20.62■□□□□ 0.89
HMBOX1-212ENST00000558662 SLKQ9H2G2 1235 aaPredicted RBP20.62■□□□□ 0.89
HMBOX1-212ENST00000558662 CDK13Q14004 1512 aaKnown RBP20.61■□□□□ 0.89
HMBOX1-212ENST00000558662 IQGAP2Q13576 1575 aa20.6■□□□□ 0.89
HMBOX1-212ENST00000558662 SLFN5Q08AF3 891 aa20.6■□□□□ 0.89
HMBOX1-212ENST00000558662 SKOR2Q2VWA4 1001 aaPredicted RBP20.6■□□□□ 0.89
HMBOX1-212ENST00000558662 EIF2AK4Q9P2K8 1649 aaKnown RBP20.59■□□□□ 0.89
HMBOX1-212ENST00000558662 ABCC2Q92887 1545 aa20.59■□□□□ 0.89
HMBOX1-212ENST00000558662 SHANK2Q9UPX8 1470 aa20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms