RNA–Protein interactions for RNA: ENST00000558319.5

SPG11-210, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SPG11, Length 6,426 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-210ENST00000558319 MARCH6O60337 910 aa17.37■□□□□ 0.37
SPG11-210ENST00000558319 HDGFP51858 240 aaKnown RBP17.35■□□□□ 0.37
SPG11-210ENST00000558319 AMPHP49418 695 aa17.35■□□□□ 0.37
SPG11-210ENST00000558319 SYTL4Q96C24 671 aaPredicted RBP17.35■□□□□ 0.37
SPG11-210ENST00000558319 KDM4AO75164 1064 aa17.35■□□□□ 0.37
SPG11-210ENST00000558319 CALRP27797 417 aaKnown RBP17.35■□□□□ 0.37
SPG11-210ENST00000558319 ZNF428Q96B54 188 aa17.35■□□□□ 0.37
SPG11-210ENST00000558319 HNRNPMP52272 730 aaKnown RBP eCLIP17.35■□□□□ 0.37
SPG11-210ENST00000558319 FOSBP53539 338 aa17.34■□□□□ 0.37
SPG11-210ENST00000558319 RILPL2Q969X0 211 aa17.34■□□□□ 0.37
SPG11-210ENST00000558319 STK31Q9BXU1 1019 aa17.33■□□□□ 0.37
SPG11-210ENST00000558319 WRNQ14191 1432 aaPredicted RBP eCLIP17.33■□□□□ 0.36
SPG11-210ENST00000558319 TPM3P06753 285 aa17.33■□□□□ 0.36
SPG11-210ENST00000558319 KTN1Q86UP2 1357 aaKnown RBP17.32■□□□□ 0.36
SPG11-210ENST00000558319 TRAK1Q9UPV9 953 aa17.32■□□□□ 0.36
SPG11-210ENST00000558319 PLIN1O60240 522 aa17.32■□□□□ 0.36
SPG11-210ENST00000558319 IPO8O15397 1037 aaKnown RBP17.32■□□□□ 0.36
SPG11-210ENST00000558319 PMFBP1Q8TBY8 1022 aa17.31■□□□□ 0.36
SPG11-210ENST00000558319 PHF14O94880 888 aa17.3■□□□□ 0.36
SPG11-210ENST00000558319 KIF3BO15066 747 aa17.3■□□□□ 0.36
SPG11-210ENST00000558319 DDX49Q9Y6V7 483 aaKnown RBP17.3■□□□□ 0.36
SPG11-210ENST00000558319 KIF27Q86VH2 1401 aa17.3■□□□□ 0.36
SPG11-210ENST00000558319 CSPP1Q1MSJ5 1256 aa17.29■□□□□ 0.36
SPG11-210ENST00000558319 SPAG9O60271 1321 aaKnown RBP17.29■□□□□ 0.36
SPG11-210ENST00000558319 EVA1CP58658 441 aa17.29■□□□□ 0.36
SPG11-210ENST00000558319 KANK4Q5T7N3 995 aaPredicted RBP17.29■□□□□ 0.36
SPG11-210ENST00000558319 EIF2S2P20042 333 aaKnown RBP17.29■□□□□ 0.36
SPG11-210ENST00000558319 DDX11L8A8MPP1 907 aa17.29■□□□□ 0.36
SPG11-210ENST00000558319 PHF23Q9BUL5 403 aaPredicted RBP17.26■□□□□ 0.35
SPG11-210ENST00000558319 GPATCH3Q96I76 525 aa17.26■□□□□ 0.35
SPG11-210ENST00000558319 MTMR7Q9Y216 660 aa17.24■□□□□ 0.35
SPG11-210ENST00000558319 SF3A1Q15459 793 aaKnown RBP17.24■□□□□ 0.35
SPG11-210ENST00000558319 MEX3CQ5U5Q3 659 aaKnown RBP17.24■□□□□ 0.35
SPG11-210ENST00000558319 USP35Q9P2H5 1018 aa17.23■□□□□ 0.35
SPG11-210ENST00000558319 MCTP1Q6DN14 999 aa17.23■□□□□ 0.35
SPG11-210ENST00000558319 GOLGA6L19H0YKK7 550 aa17.22■□□□□ 0.35
SPG11-210ENST00000558319 NUP155O75694 1391 aa17.22■□□□□ 0.35
SPG11-210ENST00000558319 ST18O60284 1047 aa17.22■□□□□ 0.35
SPG11-210ENST00000558319 PDE4AP27815 886 aa17.22■□□□□ 0.35
SPG11-210ENST00000558319 TPD52L1Q16890 204 aaPredicted RBP17.22■□□□□ 0.35
SPG11-210ENST00000558319 CEP89Q96ST8 783 aa17.22■□□□□ 0.35
SPG11-210ENST00000558319 KIF16BQ96L93 1317 aa17.21■□□□□ 0.35
SPG11-210ENST00000558319 FYB1O15117 783 aa17.21■□□□□ 0.35
SPG11-210ENST00000558319 CUX2O14529 1486 aa17.2■□□□□ 0.34
SPG11-210ENST00000558319 NUTM2GQ5VZR2 741 aa17.2■□□□□ 0.34
SPG11-210ENST00000558319 H3BQV1 296 aa17.2■□□□□ 0.34
SPG11-210ENST00000558319 IFFO2Q5TF58 517 aa17.2■□□□□ 0.34
SPG11-210ENST00000558319 MPHOSPH9Q99550 1183 aa17.2■□□□□ 0.34
SPG11-210ENST00000558319 GPS2Q13227 327 aa17.2■□□□□ 0.34
SPG11-210ENST00000558319 ANKRD45Q5TZF3 282 aa17.19■□□□□ 0.34
SPG11-210ENST00000558319 SOGA1O94964 1423 aa17.19■□□□□ 0.34
SPG11-210ENST00000558319 BECN2A8MW95 431 aa17.18■□□□□ 0.34
SPG11-210ENST00000558319 WASHC2CQ9Y4E1 1318 aa17.18■□□□□ 0.34
SPG11-210ENST00000558319 EEA1Q15075 1411 aa17.18■□□□□ 0.34
SPG11-210ENST00000558319 CNKSR2Q8WXI2 1034 aa17.18■□□□□ 0.34
SPG11-210ENST00000558319 CCDC34Q96HJ3 373 aa17.18■□□□□ 0.34
SPG11-210ENST00000558319 EID1Q9Y6B2 187 aa17.18■□□□□ 0.34
SPG11-210ENST00000558319 DHX16O60231 1041 aaKnown RBP17.18■□□□□ 0.34
SPG11-210ENST00000558319 TEX35Q5T0J7 233 aa17.18■□□□□ 0.34
SPG11-210ENST00000558319 KRI1Q8N9T8 703 aaKnown RBP17.18■□□□□ 0.34
SPG11-210ENST00000558319 APPP05067 770 aa17.17■□□□□ 0.34
SPG11-210ENST00000558319 PKNOX2Q96KN3 472 aa17.16■□□□□ 0.34
SPG11-210ENST00000558319 FAM177BA6PVY3 158 aa17.16■□□□□ 0.34
SPG11-210ENST00000558319 CEP164Q9UPV0 1460 aa17.15■□□□□ 0.34
SPG11-210ENST00000558319 CARMIL1Q5VZK9 1371 aa17.15■□□□□ 0.34
SPG11-210ENST00000558319 TSR1Q2NL82 804 aaKnown RBP17.15■□□□□ 0.34
SPG11-210ENST00000558319 TCEAL9Q9UHQ7 104 aa17.15■□□□□ 0.34
SPG11-210ENST00000558319 PCMTD1Q96MG8 357 aaPredicted RBP17.15■□□□□ 0.34
SPG11-210ENST00000558319 TRIM34Q9BYJ4 488 aa17.15■□□□□ 0.34
SPG11-210ENST00000558319 FAM161AQ3B820 660 aa17.14■□□□□ 0.33
SPG11-210ENST00000558319 MINK1Q8N4C8 1332 aaPredicted RBP17.14■□□□□ 0.33
SPG11-210ENST00000558319 HOMER1Q86YM7 354 aa17.14■□□□□ 0.33
SPG11-210ENST00000558319 FAM43AQ8N2R8 423 aa17.14■□□□□ 0.33
SPG11-210ENST00000558319 R3HCC1Q9Y3T6 440 aaKnown RBP17.14■□□□□ 0.33
SPG11-210ENST00000558319 CENPJQ9HC77 1338 aaPredicted RBP17.14■□□□□ 0.33
SPG11-210ENST00000558319 CTDP1Q9Y5B0 961 aaPredicted RBP17.13■□□□□ 0.33
SPG11-210ENST00000558319 SKOR2Q2VWA4 1001 aaPredicted RBP17.13■□□□□ 0.33
SPG11-210ENST00000558319 C1orf141Q5JVX7 400 aa17.13■□□□□ 0.33
SPG11-210ENST00000558319 FAM184AQ8NB25 1140 aa17.13■□□□□ 0.33
SPG11-210ENST00000558319 EXOC6Q8TAG9 804 aa17.12■□□□□ 0.33
SPG11-210ENST00000558319 SETD5Q9C0A6 1442 aa17.12■□□□□ 0.33
SPG11-210ENST00000558319 AEBP2Q6ZN18 517 aaPredicted RBP17.12■□□□□ 0.33
SPG11-210ENST00000558319 CCDC70Q6NSX1 233 aa17.12■□□□□ 0.33
SPG11-210ENST00000558319 ARHGAP35Q9NRY4 1499 aa17.12■□□□□ 0.33
SPG11-210ENST00000558319 PPP1R1BQ9UD71 204 aaPredicted RBP17.12■□□□□ 0.33
SPG11-210ENST00000558319 HMMRO75330 724 aa17.1■□□□□ 0.33
SPG11-210ENST00000558319 PDZRN4Q6ZMN7 1036 aaPredicted RBP17.1■□□□□ 0.33
SPG11-210ENST00000558319 TERF2IPQ9NYB0 399 aa17.1■□□□□ 0.33
SPG11-210ENST00000558319 TNIKQ9UKE5 1360 aa17.1■□□□□ 0.33
SPG11-210ENST00000558319 CWC22Q9HCG8 908 aaKnown RBP17.1■□□□□ 0.33
SPG11-210ENST00000558319 RALBP1Q15311 655 aa17.09■□□□□ 0.33
SPG11-210ENST00000558319 ABCC8Q09428 1581 aa17.09■□□□□ 0.33
SPG11-210ENST00000558319 CRBNQ96SW2 442 aa17.09■□□□□ 0.33
SPG11-210ENST00000558319 AIMP1Q12904 312 aaKnown RBP17.09■□□□□ 0.33
SPG11-210ENST00000558319 RRP12Q5JTH9 1297 aaKnown RBP17.09■□□□□ 0.33
SPG11-210ENST00000558319 VPS37DQ86XT2 251 aa17.09■□□□□ 0.33
SPG11-210ENST00000558319 AKAP17AQ02040 695 aaKnown RBP17.09■□□□□ 0.33
SPG11-210ENST00000558319 STK11IPQ8N1F8 1099 aa17.09■□□□□ 0.33
SPG11-210ENST00000558319 RBM10P98175 930 aaKnown RBP17.08■□□□□ 0.33
SPG11-210ENST00000558319 PANK3Q9H999 370 aa17.08■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms