RNA–Protein interactions for RNA: ENST00000558248.5

LRRC28-205, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 499 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-205ENST00000558248 RBM33Q96EV2 1170 aaKnown RBP8.55□□□□□ -1.04
LRRC28-205ENST00000558248 TK2O00142 265 aa8.54□□□□□ -1.04
LRRC28-205ENST00000558248 POTEEQ6S8J3 1075 aa8.54□□□□□ -1.04
LRRC28-205ENST00000558248 PPP1R3GB7ZBB8 358 aa8.53□□□□□ -1.04
LRRC28-205ENST00000558248 EN1Q05925 392 aaPredicted RBP8.53□□□□□ -1.04
LRRC28-205ENST00000558248 ADGRD1Q6QNK2 874 aa8.53□□□□□ -1.04
LRRC28-205ENST00000558248 SPNS2Q8IVW8 549 aa8.53□□□□□ -1.04
LRRC28-205ENST00000558248 STAC3Q96MF2 364 aa8.53□□□□□ -1.04
LRRC28-205ENST00000558248 C6orf132Q5T0Z8 1188 aa8.52□□□□□ -1.05
LRRC28-205ENST00000558248 DMRTA1Q5VZB9 504 aa8.51□□□□□ -1.05
LRRC28-205ENST00000558248 SMYD5Q6GMV2 418 aa8.5□□□□□ -1.05
LRRC28-205ENST00000558248 SLC4A5Q9BY07 1137 aa8.49□□□□□ -1.05
LRRC28-205ENST00000558248 TULP1O00294 542 aaPredicted RBP8.48□□□□□ -1.05
LRRC28-205ENST00000558248 SEMA3EO15041 775 aa8.48□□□□□ -1.05
LRRC28-205ENST00000558248 OSBPP22059 807 aa8.48□□□□□ -1.05
LRRC28-205ENST00000558248 MLLT3P42568 568 aaPredicted RBP8.48□□□□□ -1.05
LRRC28-205ENST00000558248 CERKQ8TCT0 537 aa8.48□□□□□ -1.05
LRRC28-205ENST00000558248 ZBED2Q9BTP6 218 aa8.48□□□□□ -1.05
LRRC28-205ENST00000558248 MYT1LQ9UL68 1186 aa8.48□□□□□ -1.05
LRRC28-205ENST00000558248 VPS9D1Q9Y2B5 631 aa8.48□□□□□ -1.05
LRRC28-205ENST00000558248 NBPF3Q9H094 633 aa8.47□□□□□ -1.05
LRRC28-205ENST00000558248 COL9A1P20849 921 aa8.46□□□□□ -1.06
LRRC28-205ENST00000558248 MMRN1Q13201 1228 aa8.46□□□□□ -1.06
LRRC28-205ENST00000558248 TSR1Q2NL82 804 aaKnown RBP8.46□□□□□ -1.06
LRRC28-205ENST00000558248 TESPA1A2RU30 521 aaPredicted RBP8.44□□□□□ -1.06
LRRC28-205ENST00000558248 RNF166Q96A37 237 aaPredicted RBP8.44□□□□□ -1.06
LRRC28-205ENST00000558248 MRPL50Q8N5N7 158 aaKnown RBP8.43□□□□□ -1.06
LRRC28-205ENST00000558248 RABGEF1Q9UJ41 708 aa8.43□□□□□ -1.06
LRRC28-205ENST00000558248 GOLGA8CPA6NN73 597 aa8.42□□□□□ -1.06
LRRC28-205ENST00000558248 HRO43593 1189 aa8.42□□□□□ -1.06
LRRC28-205ENST00000558248 ONECUT3O60422 494 aaPredicted RBP8.42□□□□□ -1.06
LRRC28-205ENST00000558248 PROX2Q3B8N5 592 aa8.42□□□□□ -1.06
LRRC28-205ENST00000558248 NUTM2FA1L443 756 aa8.41□□□□□ -1.06
LRRC28-205ENST00000558248 TRIM6-TRIM34B2RNG4 842 aa8.41□□□□□ -1.06
LRRC28-205ENST00000558248 PRIM1P49642 420 aaKnown RBP8.41□□□□□ -1.06
LRRC28-205ENST00000558248 PACS2Q86VP3 889 aa8.41□□□□□ -1.06
LRRC28-205ENST00000558248 PRSS12P56730 875 aa8.4□□□□□ -1.06
LRRC28-205ENST00000558248 CDHR5Q9HBB8 845 aa8.4□□□□□ -1.06
LRRC28-205ENST00000558248 CDCA7LQ96GN5 454 aa8.39□□□□□ -1.07
LRRC28-205ENST00000558248 KIAA1468Q9P260 1216 aa8.39□□□□□ -1.07
LRRC28-205ENST00000558248 RBM27Q9P2N5 1060 aaKnown RBP8.39□□□□□ -1.07
LRRC28-205ENST00000558248 LAPTM4BQ86VI4 370 aa8.38□□□□□ -1.07
LRRC28-205ENST00000558248 NBPF26B4DH59 902 aa8.37□□□□□ -1.07
LRRC28-205ENST00000558248 BHMG1C9JSJ3 638 aaPredicted RBP8.37□□□□□ -1.07
LRRC28-205ENST00000558248 FCHSD2O94868 740 aa8.36□□□□□ -1.07
LRRC28-205ENST00000558248 PTGDRQ13258 359 aa8.35□□□□□ -1.07
LRRC28-205ENST00000558248 RBM26Q5T8P6 1007 aaKnown RBP8.35□□□□□ -1.07
LRRC28-205ENST00000558248 KCTD12Q96CX2 325 aaKnown RBP8.35□□□□□ -1.07
LRRC28-205ENST00000558248 TSKSQ9UJT2 592 aa8.35□□□□□ -1.07
LRRC28-205ENST00000558248 FAM98CQ17RN3 349 aaKnown RBP8.34□□□□□ -1.07
LRRC28-205ENST00000558248 ANKK1Q8NFD2 765 aa8.34□□□□□ -1.07
LRRC28-205ENST00000558248 WNT2BQ93097 391 aa8.34□□□□□ -1.07
LRRC28-205ENST00000558248 NPDC1Q9NQX5 325 aaPredicted RBP8.34□□□□□ -1.07
LRRC28-205ENST00000558248 PADI6Q6TGC4 694 aa8.33□□□□□ -1.08
LRRC28-205ENST00000558248 GPIHBP1Q8IV16 184 aa8.33□□□□□ -1.08
LRRC28-205ENST00000558248 SEPT9Q9UHD8 586 aaPredicted RBP8.33□□□□□ -1.08
LRRC28-205ENST00000558248 HIC1Q14526 733 aa8.32□□□□□ -1.08
LRRC28-205ENST00000558248 HCSTQ9UBK5 93 aa8.32□□□□□ -1.08
LRRC28-205ENST00000558248 TATDN2Q93075 761 aa8.31□□□□□ -1.08
LRRC28-205ENST00000558248 PNMA3Q9UL41 463 aa8.31□□□□□ -1.08
LRRC28-205ENST00000558248 HDGFP51858 240 aaKnown RBP8.3□□□□□ -1.08
LRRC28-205ENST00000558248 ZFRQ96KR1 1074 aaKnown RBP8.3□□□□□ -1.08
LRRC28-205ENST00000558248 NUDT18Q6ZVK8 323 aa8.29□□□□□ -1.08
LRRC28-205ENST00000558248 TTC13Q8NBP0 860 aa8.29□□□□□ -1.08
LRRC28-205ENST00000558248 SLC4A3P48751 1232 aa8.28□□□□□ -1.08
LRRC28-205ENST00000558248 THSD4Q6ZMP0 1018 aa8.28□□□□□ -1.08
LRRC28-205ENST00000558248 LRCH3Q96II8 777 aa8.28□□□□□ -1.08
LRRC28-205ENST00000558248 FAM198AQ9UFP1 575 aa8.28□□□□□ -1.08
LRRC28-205ENST00000558248 SMAPO00193 183 aa8.27□□□□□ -1.09
LRRC28-205ENST00000558248 GNPATO15228 680 aa8.27□□□□□ -1.09
LRRC28-205ENST00000558248 RBM46Q8TBY0 533 aaKnown RBP8.27□□□□□ -1.09
LRRC28-205ENST00000558248 NISCHQ9Y2I1 1504 aa8.26□□□□□ -1.09
LRRC28-205ENST00000558248 PTPN5P54829 565 aa8.26□□□□□ -1.09
LRRC28-205ENST00000558248 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.26□□□□□ -1.09
LRRC28-205ENST00000558248 SOWAHBA6NEL2 793 aa8.25□□□□□ -1.09
LRRC28-205ENST00000558248 OATP04181 439 aa8.24□□□□□ -1.09
LRRC28-205ENST00000558248 BCAMP50895 628 aa8.24□□□□□ -1.09
LRRC28-205ENST00000558248 LMOD2Q6P5Q4 547 aa8.24□□□□□ -1.09
LRRC28-205ENST00000558248 NECTIN2Q92692 538 aa8.24□□□□□ -1.09
LRRC28-205ENST00000558248 ADGRG1Q9Y653 693 aa8.24□□□□□ -1.09
LRRC28-205ENST00000558248 NYAP1Q6ZVC0 841 aa8.23□□□□□ -1.09
LRRC28-205ENST00000558248 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.23□□□□□ -1.09
LRRC28-205ENST00000558248 BCANQ96GW7 911 aa8.23□□□□□ -1.09
LRRC28-205ENST00000558248 GPR37O15354 613 aa8.22□□□□□ -1.09
LRRC28-205ENST00000558248 RNF40O75150 1001 aa8.22□□□□□ -1.09
LRRC28-205ENST00000558248 DNAJB2P25686 324 aa8.22□□□□□ -1.09
LRRC28-205ENST00000558248 SAMD7Q7Z3H4 446 aa8.22□□□□□ -1.09
LRRC28-205ENST00000558248 C3orf80F5H4A9 247 aa8.21□□□□□ -1.1
LRRC28-205ENST00000558248 SLF2Q8IX21 1173 aa8.21□□□□□ -1.1
LRRC28-205ENST00000558248 EYA1Q99502 592 aa8.21□□□□□ -1.1
LRRC28-205ENST00000558248 TSR3Q9UJK0 312 aaKnown RBP8.21□□□□□ -1.1
LRRC28-205ENST00000558248 HPS5Q9UPZ3 1129 aa8.21□□□□□ -1.1
LRRC28-205ENST00000558248 PPP4CP60510 307 aa8.2□□□□□ -1.1
LRRC28-205ENST00000558248 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.19□□□□□ -1.1
LRRC28-205ENST00000558248 MAP2K5Q13163 448 aa8.18□□□□□ -1.1
LRRC28-205ENST00000558248 FAM161AQ3B820 660 aa8.18□□□□□ -1.1
LRRC28-205ENST00000558248 SWT1Q5T5J6 900 aaKnown RBP8.18□□□□□ -1.1
LRRC28-205ENST00000558248 METTL3Q86U44 580 aaKnown RBP8.18□□□□□ -1.1
LRRC28-205ENST00000558248 RCCD1A6NED2 376 aa8.17□□□□□ -1.1
LRRC28-205ENST00000558248 FECHP22830 423 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms