RNA–Protein interactions for RNA: ENST00000558248.5

LRRC28-205, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 499 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-205ENST00000558248 AEBP2Q6ZN18 517 aaPredicted RBP19.65■□□□□ 0.74
LRRC28-205ENST00000558248 CHIC1Q5VXU3 224 aa19.14■□□□□ 0.65
LRRC28-205ENST00000558248 SENP3Q9H4L4 574 aaPredicted RBP16.84■□□□□ 0.29
LRRC28-205ENST00000558248 PHF23Q9BUL5 403 aaPredicted RBP16.73■□□□□ 0.27
LRRC28-205ENST00000558248 FOXD1Q16676 465 aa15.55■□□□□ 0.08
LRRC28-205ENST00000558248 PLPPR3Q6T4P5 718 aa15.54■□□□□ 0.08
LRRC28-205ENST00000558248 ADRA2BP18089 450 aa14.83□□□□□ -0.04
LRRC28-205ENST00000558248 PPP6R1Q9UPN7 881 aa14.81□□□□□ -0.04
LRRC28-205ENST00000558248 PIAS4Q8N2W9 510 aaPredicted RBP14.71□□□□□ -0.05
LRRC28-205ENST00000558248 MSH5O43196 834 aa14.51□□□□□ -0.09
LRRC28-205ENST00000558248 POTEDQ86YR6 584 aa14.12□□□□□ -0.15
LRRC28-205ENST00000558248 SCAF1Q9H7N4 1312 aaKnown RBP13.72□□□□□ -0.21
LRRC28-205ENST00000558248 PPP4R3CPQ6ZMV5 832 aa13.63□□□□□ -0.23
LRRC28-205ENST00000558248 MAPK8IP2Q13387 824 aaPredicted RBP13.46□□□□□ -0.25
LRRC28-205ENST00000558248 DMRT2Q9Y5R5 561 aa13.38□□□□□ -0.27
LRRC28-205ENST00000558248 NCBP3Q53F19 620 aaKnown RBP13.33□□□□□ -0.28
LRRC28-205ENST00000558248 CNKSR2Q8WXI2 1034 aa13.31□□□□□ -0.28
LRRC28-205ENST00000558248 KCNA4P22459 653 aa13.12□□□□□ -0.31
LRRC28-205ENST00000558248 RNF216Q9NWF9 866 aaPredicted RBP13.08□□□□□ -0.32
LRRC28-205ENST00000558248 HOXD11P31277 338 aaPredicted RBP13.03□□□□□ -0.32
LRRC28-205ENST00000558248 NPM3O75607 178 aaKnown RBP13.02□□□□□ -0.33
LRRC28-205ENST00000558248 DCAF8L1A6NGE4 600 aa12.88□□□□□ -0.35
LRRC28-205ENST00000558248 DNAJC5BQ9UF47 199 aa12.68□□□□□ -0.38
LRRC28-205ENST00000558248 SLC4A1APQ9BWU0 796 aaKnown RBP12.54□□□□□ -0.4
LRRC28-205ENST00000558248 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.5□□□□□ -0.41
LRRC28-205ENST00000558248 RNF39Q9H2S5 420 aa12.35□□□□□ -0.43
LRRC28-205ENST00000558248 SLC4A2P04920 1241 aa12.28□□□□□ -0.44
LRRC28-205ENST00000558248 C1QBPQ07021 282 aaKnown RBP12.25□□□□□ -0.45
LRRC28-205ENST00000558248 CACNB1Q02641 598 aaPredicted RBP12.22□□□□□ -0.45
LRRC28-205ENST00000558248 U3KPZ7 1027 aaPredicted RBP12.19□□□□□ -0.46
LRRC28-205ENST00000558248 FOXD4L1Q9NU39 408 aa12.18□□□□□ -0.46
LRRC28-205ENST00000558248 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.14□□□□□ -0.47
LRRC28-205ENST00000558248 HNRNPUL2Q1KMD3 747 aaKnown RBP12.14□□□□□ -0.47
LRRC28-205ENST00000558248 MYCNP04198 464 aaPredicted RBP12.1□□□□□ -0.47
LRRC28-205ENST00000558248 APLP2Q06481 763 aa12.09□□□□□ -0.47
LRRC28-205ENST00000558248 SAMD1Q6SPF0 538 aaPredicted RBP12.05□□□□□ -0.48
LRRC28-205ENST00000558248 ZBTB22O15209 634 aa12.02□□□□□ -0.49
LRRC28-205ENST00000558248 EHMT2Q96KQ7 1210 aa12.01□□□□□ -0.49
LRRC28-205ENST00000558248 CAPN15O75808 1086 aa11.93□□□□□ -0.5
LRRC28-205ENST00000558248 SPINK5Q9NQ38 1064 aaPredicted RBP11.88□□□□□ -0.51
LRRC28-205ENST00000558248 CSRNP3Q8WYN3 585 aa11.86□□□□□ -0.51
LRRC28-205ENST00000558248 ZNF219Q9P2Y4 722 aaPredicted RBP11.86□□□□□ -0.51
LRRC28-205ENST00000558248 TRHP20396 242 aaPredicted RBP11.82□□□□□ -0.52
LRRC28-205ENST00000558248 ATXN8OSP0DMR3 200 aa11.79□□□□□ -0.52
LRRC28-205ENST00000558248 DSG3P32926 999 aa11.69□□□□□ -0.54
LRRC28-205ENST00000558248 ATF5Q9Y2D1 282 aaPredicted RBP11.66□□□□□ -0.54
LRRC28-205ENST00000558248 ABCB7O75027 752 aa11.65□□□□□ -0.54
LRRC28-205ENST00000558248 POLA2Q14181 598 aa11.58□□□□□ -0.56
LRRC28-205ENST00000558248 ZBTB12Q9Y330 459 aaPredicted RBP11.49□□□□□ -0.57
LRRC28-205ENST00000558248 FBLN2P98095 1184 aa11.36□□□□□ -0.59
LRRC28-205ENST00000558248 RBM42Q9BTD8 480 aaKnown RBP11.27□□□□□ -0.61
LRRC28-205ENST00000558248 OSCARQ8IYS5 282 aa11.19□□□□□ -0.62
LRRC28-205ENST00000558248 MKRN4PQ13434 485 aaPredicted RBP11.17□□□□□ -0.62
LRRC28-205ENST00000558248 SPDYE2BA6NHP3 402 aa11.1□□□□□ -0.63
LRRC28-205ENST00000558248 SPDYE6P0CI01 402 aa11.1□□□□□ -0.63
LRRC28-205ENST00000558248 SPDYE2Q495Y8 402 aa11.1□□□□□ -0.63
LRRC28-205ENST00000558248 AKT1S1Q96B36 256 aa11.04□□□□□ -0.64
LRRC28-205ENST00000558248 POTEHQ6S545 545 aa11.03□□□□□ -0.64
LRRC28-205ENST00000558248 ZNF692Q9BU19 519 aaPredicted RBP11.03□□□□□ -0.64
LRRC28-205ENST00000558248 SSUH2Q9Y2M2 353 aa10.95□□□□□ -0.66
LRRC28-205ENST00000558248 SPDYE4A6NLX3 237 aa10.94□□□□□ -0.66
LRRC28-205ENST00000558248 REM2Q8IYK8 340 aaPredicted RBP10.9□□□□□ -0.66
LRRC28-205ENST00000558248 PABPN1Q86U42 306 aaKnown RBP eCLIP10.86□□□□□ -0.67
LRRC28-205ENST00000558248 SPDYE1Q8NFV5 336 aaPredicted RBP10.82□□□□□ -0.68
LRRC28-205ENST00000558248 FKBP8Q14318 412 aa10.8□□□□□ -0.68
LRRC28-205ENST00000558248 CHRDL2Q6WN34 429 aa10.79□□□□□ -0.68
LRRC28-205ENST00000558248 PITPNM1O00562 1244 aa10.77□□□□□ -0.69
LRRC28-205ENST00000558248 CLEC11AQ9Y240 323 aa10.77□□□□□ -0.69
LRRC28-205ENST00000558248 STAG3Q9UJ98 1225 aa10.72□□□□□ -0.69
LRRC28-205ENST00000558248 PROM2Q8N271 834 aa10.68□□□□□ -0.7
LRRC28-205ENST00000558248 PRR29P0C7W0 189 aa10.66□□□□□ -0.7
LRRC28-205ENST00000558248 PIP4P2Q8N4L2 257 aa10.59□□□□□ -0.71
LRRC28-205ENST00000558248 FXR2P51116 673 aaKnown RBP eCLIP10.58□□□□□ -0.72
LRRC28-205ENST00000558248 FBXO3Q9UK99 471 aa10.55□□□□□ -0.72
LRRC28-205ENST00000558248 PRKAR2AP13861 404 aaKnown RBP10.53□□□□□ -0.72
LRRC28-205ENST00000558248 PLEKHG5O94827 1062 aa10.48□□□□□ -0.73
LRRC28-205ENST00000558248 CHADLQ6NUI6 762 aa10.45□□□□□ -0.74
LRRC28-205ENST00000558248 MIER1Q8N108 512 aa10.42□□□□□ -0.74
LRRC28-205ENST00000558248 PLCD3Q8N3E9 789 aa10.41□□□□□ -0.74
LRRC28-205ENST00000558248 CREBZFQ9NS37 354 aa10.41□□□□□ -0.74
LRRC28-205ENST00000558248 FARP1Q9Y4F1 1045 aaPredicted RBP10.38□□□□□ -0.75
LRRC28-205ENST00000558248 ZBTB47Q9UFB7 747 aaPredicted RBP10.36□□□□□ -0.75
LRRC28-205ENST00000558248 NPM1P06748 294 aaKnown RBP eCLIP10.35□□□□□ -0.75
LRRC28-205ENST00000558248 HAX1O00165 279 aa10.34□□□□□ -0.75
LRRC28-205ENST00000558248 VASPP50552 380 aaPredicted RBP10.33□□□□□ -0.76
LRRC28-205ENST00000558248 PAK3O75914 559 aaPredicted RBP10.25□□□□□ -0.77
LRRC28-205ENST00000558248 MNX1P50219 401 aaPredicted RBP10.25□□□□□ -0.77
LRRC28-205ENST00000558248 KLHL34Q8N239 644 aa10.24□□□□□ -0.77
LRRC28-205ENST00000558248 C19orf67A6NJJ6 358 aa10.23□□□□□ -0.77
LRRC28-205ENST00000558248 CD44P16070 742 aaKnown RBP10.23□□□□□ -0.77
LRRC28-205ENST00000558248 SP7Q8TDD2 431 aaPredicted RBP10.21□□□□□ -0.77
LRRC28-205ENST00000558248 ZRANB1Q9UGI0 708 aa10.15□□□□□ -0.78
LRRC28-205ENST00000558248 IFNLR1Q8IU57 520 aaPredicted RBP10.12□□□□□ -0.79
LRRC28-205ENST00000558248 FAM212AQ96EL1 285 aa10.12□□□□□ -0.79
LRRC28-205ENST00000558248 EVX2Q03828 476 aa10.11□□□□□ -0.79
LRRC28-205ENST00000558248 TSPYL2Q9H2G4 693 aaPredicted RBP10.11□□□□□ -0.79
LRRC28-205ENST00000558248 SPOCK2Q92563 424 aa10.1□□□□□ -0.79
LRRC28-205ENST00000558248 NUBP1P53384 320 aa10.09□□□□□ -0.79
LRRC28-205ENST00000558248 RASEFQ8IZ41 740 aa10.09□□□□□ -0.79
LRRC28-205ENST00000558248 CLCN6P51797 869 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms