RNA–Protein interactions for RNA: ENST00000557678.1

GPHN-216, Transcript of gephyrin, humanhuman

TSL 3

Gene GPHN, Length 592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-216ENST00000557678 ZBED2Q9BTP6 218 aa8.19□□□□□ -1.1
GPHN-216ENST00000557678 MRPL50Q8N5N7 158 aaKnown RBP8.18□□□□□ -1.1
GPHN-216ENST00000557678 PPP1R3GB7ZBB8 358 aa8.17□□□□□ -1.1
GPHN-216ENST00000557678 PTPN5P54829 565 aa8.17□□□□□ -1.1
GPHN-216ENST00000557678 EPAS1Q99814 870 aa8.17□□□□□ -1.1
GPHN-216ENST00000557678 SLC4A5Q9BY07 1137 aa8.17□□□□□ -1.1
GPHN-216ENST00000557678 NBR1Q14596 966 aa8.16□□□□□ -1.1
GPHN-216ENST00000557678 NBPF3Q9H094 633 aa8.16□□□□□ -1.1
GPHN-216ENST00000557678 COL9A1P20849 921 aa8.15□□□□□ -1.1
GPHN-216ENST00000557678 PROX2Q3B8N5 592 aa8.15□□□□□ -1.1
GPHN-216ENST00000557678 SPDYE16A6NNV3 312 aaPredicted RBP8.14□□□□□ -1.11
GPHN-216ENST00000557678 MAP3K7O43318 606 aa8.14□□□□□ -1.11
GPHN-216ENST00000557678 C6orf132Q5T0Z8 1188 aa8.14□□□□□ -1.11
GPHN-216ENST00000557678 GRXCR2A6NFK2 248 aa8.13□□□□□ -1.11
GPHN-216ENST00000557678 WNT2BQ93097 391 aa8.13□□□□□ -1.11
GPHN-216ENST00000557678 TSHZ2Q9NRE2 1034 aa8.13□□□□□ -1.11
GPHN-216ENST00000557678 BHMG1C9JSJ3 638 aaPredicted RBP8.12□□□□□ -1.11
GPHN-216ENST00000557678 PDIA6Q15084 440 aa8.12□□□□□ -1.11
GPHN-216ENST00000557678 IRX2Q9BZI1 471 aaPredicted RBP8.12□□□□□ -1.11
GPHN-216ENST00000557678 KIAA1468Q9P260 1216 aa8.1□□□□□ -1.11
GPHN-216ENST00000557678 RABGEF1Q9UJ41 708 aa8.1□□□□□ -1.11
GPHN-216ENST00000557678 A0A0G2JS52 829 aa8.08□□□□□ -1.12
GPHN-216ENST00000557678 EN1Q05925 392 aaPredicted RBP8.08□□□□□ -1.12
GPHN-216ENST00000557678 TSR1Q2NL82 804 aaKnown RBP8.08□□□□□ -1.12
GPHN-216ENST00000557678 THSD4Q6ZMP0 1018 aa8.08□□□□□ -1.12
GPHN-216ENST00000557678 ANKK1Q8NFD2 765 aa8.08□□□□□ -1.12
GPHN-216ENST00000557678 SEPT9Q9UHD8 586 aaPredicted RBP8.07□□□□□ -1.12
GPHN-216ENST00000557678 TRIM6-TRIM34B2RNG4 842 aa8.06□□□□□ -1.12
GPHN-216ENST00000557678 LCE2BO14633 110 aa8.06□□□□□ -1.12
GPHN-216ENST00000557678 PACS2Q86VP3 889 aa8.04□□□□□ -1.12
GPHN-216ENST00000557678 ARIH1Q9Y4X5 557 aaPredicted RBP8.04□□□□□ -1.12
GPHN-216ENST00000557678 ONECUT3O60422 494 aaPredicted RBP8.03□□□□□ -1.12
GPHN-216ENST00000557678 BCAMP50895 628 aa8.03□□□□□ -1.12
GPHN-216ENST00000557678 LAPTM4BQ86VI4 370 aa8.03□□□□□ -1.12
GPHN-216ENST00000557678 ZFRQ96KR1 1074 aaKnown RBP8.02□□□□□ -1.13
GPHN-216ENST00000557678 PRIM1P49642 420 aaKnown RBP8□□□□□ -1.13
GPHN-216ENST00000557678 FAM98CQ17RN3 349 aaKnown RBP8□□□□□ -1.13
GPHN-216ENST00000557678 KCNV2Q8TDN2 545 aa8□□□□□ -1.13
GPHN-216ENST00000557678 CDCA7LQ96GN5 454 aa8□□□□□ -1.13
GPHN-216ENST00000557678 TSKSQ9UJT2 592 aa8□□□□□ -1.13
GPHN-216ENST00000557678 OSBPP22059 807 aa7.99□□□□□ -1.13
GPHN-216ENST00000557678 PRSS12P56730 875 aa7.99□□□□□ -1.13
GPHN-216ENST00000557678 IFFO2Q5TF58 517 aa7.99□□□□□ -1.13
GPHN-216ENST00000557678 CERKQ8TCT0 537 aa7.99□□□□□ -1.13
GPHN-216ENST00000557678 ARHGEF1Q92888 912 aaKnown RBP7.99□□□□□ -1.13
GPHN-216ENST00000557678 CDHR5Q9HBB8 845 aa7.99□□□□□ -1.13
GPHN-216ENST00000557678 SOWAHBA6NEL2 793 aa7.98□□□□□ -1.13
GPHN-216ENST00000557678 SMAPO00193 183 aa7.98□□□□□ -1.13
GPHN-216ENST00000557678 RGS20O76081 388 aa7.98□□□□□ -1.13
GPHN-216ENST00000557678 LRCH3Q96II8 777 aa7.98□□□□□ -1.13
GPHN-216ENST00000557678 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.98□□□□□ -1.13
GPHN-216ENST00000557678 PLCB2Q00722 1185 aa7.97□□□□□ -1.13
GPHN-216ENST00000557678 PNMA3Q9UL41 463 aa7.97□□□□□ -1.13
GPHN-216ENST00000557678 NBPF26B4DH59 902 aa7.96□□□□□ -1.14
GPHN-216ENST00000557678 Q6ZNB5 142 aa7.96□□□□□ -1.14
GPHN-216ENST00000557678 P3H3Q8IVL6 736 aa7.96□□□□□ -1.14
GPHN-216ENST00000557678 HPS5Q9UPZ3 1129 aa7.96□□□□□ -1.14
GPHN-216ENST00000557678 RNF40O75150 1001 aa7.95□□□□□ -1.14
GPHN-216ENST00000557678 MLLT3P42568 568 aaPredicted RBP7.95□□□□□ -1.14
GPHN-216ENST00000557678 HAP1P54257 671 aaPredicted RBP7.95□□□□□ -1.14
GPHN-216ENST00000557678 WBP1LQ9NX94 342 aa7.95□□□□□ -1.14
GPHN-216ENST00000557678 HDGFP51858 240 aaKnown RBP7.94□□□□□ -1.14
GPHN-216ENST00000557678 NUDT18Q6ZVK8 323 aa7.94□□□□□ -1.14
GPHN-216ENST00000557678 TATDN2Q93075 761 aa7.94□□□□□ -1.14
GPHN-216ENST00000557678 SAMD7Q7Z3H4 446 aa7.93□□□□□ -1.14
GPHN-216ENST00000557678 FAM198AQ9UFP1 575 aa7.93□□□□□ -1.14
GPHN-216ENST00000557678 TSR3Q9UJK0 312 aaKnown RBP7.93□□□□□ -1.14
GPHN-216ENST00000557678 NUTM2FA1L443 756 aa7.92□□□□□ -1.14
GPHN-216ENST00000557678 PPP4CP60510 307 aa7.92□□□□□ -1.14
GPHN-216ENST00000557678 PADI6Q6TGC4 694 aa7.92□□□□□ -1.14
GPHN-216ENST00000557678 NYAP1Q6ZVC0 841 aa7.91□□□□□ -1.14
GPHN-216ENST00000557678 C3orf80F5H4A9 247 aa7.89□□□□□ -1.15
GPHN-216ENST00000557678 RBM27Q9P2N5 1060 aaKnown RBP7.89□□□□□ -1.15
GPHN-216ENST00000557678 SEMA3EO15041 775 aa7.88□□□□□ -1.15
GPHN-216ENST00000557678 KCNC4Q03721 635 aa7.87□□□□□ -1.15
GPHN-216ENST00000557678 NPDC1Q9NQX5 325 aaPredicted RBP7.87□□□□□ -1.15
GPHN-216ENST00000557678 SLC4A3P48751 1232 aa7.86□□□□□ -1.15
GPHN-216ENST00000557678 ITGBL1O95965 494 aaPredicted RBP7.85□□□□□ -1.15
GPHN-216ENST00000557678 SWT1Q5T5J6 900 aaKnown RBP7.84□□□□□ -1.15
GPHN-216ENST00000557678 PTGDRQ13258 359 aa7.83□□□□□ -1.16
GPHN-216ENST00000557678 SMYD5Q6GMV2 418 aa7.83□□□□□ -1.16
GPHN-216ENST00000557678 SLF2Q8IX21 1173 aa7.82□□□□□ -1.16
GPHN-216ENST00000557678 TTC13Q8NBP0 860 aa7.82□□□□□ -1.16
GPHN-216ENST00000557678 FCHSD2O94868 740 aa7.81□□□□□ -1.16
GPHN-216ENST00000557678 RBM46Q8TBY0 533 aaKnown RBP7.81□□□□□ -1.16
GPHN-216ENST00000557678 NECTIN2Q92692 538 aa7.81□□□□□ -1.16
GPHN-216ENST00000557678 FAM161AQ3B820 660 aa7.8□□□□□ -1.16
GPHN-216ENST00000557678 RBM26Q5T8P6 1007 aaKnown RBP7.79□□□□□ -1.16
GPHN-216ENST00000557678 EYA1Q99502 592 aa7.79□□□□□ -1.16
GPHN-216ENST00000557678 DNAJB2P25686 324 aa7.78□□□□□ -1.16
GPHN-216ENST00000557678 APLP1P51693 650 aa7.78□□□□□ -1.16
GPHN-216ENST00000557678 MTRQ99707 1265 aa7.78□□□□□ -1.16
GPHN-216ENST00000557678 TESPA1A2RU30 521 aaPredicted RBP7.77□□□□□ -1.17
GPHN-216ENST00000557678 IL21Q9HBE4 155 aa7.77□□□□□ -1.17
GPHN-216ENST00000557678 COPS2P61201 443 aa7.76□□□□□ -1.17
GPHN-216ENST00000557678 TJAP1Q5JTD0 557 aa7.76□□□□□ -1.17
GPHN-216ENST00000557678 ADGRG1Q9Y653 693 aa7.76□□□□□ -1.17
GPHN-216ENST00000557678 RCCD1A6NED2 376 aa7.75□□□□□ -1.17
GPHN-216ENST00000557678 TRAF7Q6Q0C0 670 aa7.75□□□□□ -1.17
GPHN-216ENST00000557678 KDM2AQ9Y2K7 1162 aa7.75□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms