RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 ABCA8O94911 1581 aa21.79■■□□□ 1.08
SHMT2-231ENST00000557433 NUP160Q12769 1436 aa21.78■■□□□ 1.08
SHMT2-231ENST00000557433 TSPY4P0CV99 314 aa21.78■■□□□ 1.08
SHMT2-231ENST00000557433 TSPY10P0CW01 314 aa21.78■■□□□ 1.08
SHMT2-231ENST00000557433 WASHC2CQ9Y4E1 1318 aa21.77■■□□□ 1.07
SHMT2-231ENST00000557433 RRP1P56182 461 aaKnown RBP21.75■■□□□ 1.07
SHMT2-231ENST00000557433 NLRP13Q86W25 1043 aa21.75■■□□□ 1.07
SHMT2-231ENST00000557433 ST20-MTHFSA0A0A6YYL1 179 aa21.74■■□□□ 1.07
SHMT2-231ENST00000557433 DEKP35659 375 aaKnown RBP21.74■■□□□ 1.07
SHMT2-231ENST00000557433 PARD3Q8TEW0 1356 aa21.74■■□□□ 1.07
SHMT2-231ENST00000557433 LAMC1P11047 1609 aa21.74■■□□□ 1.07
SHMT2-231ENST00000557433 TCERG1O14776 1098 aaKnown RBP21.74■■□□□ 1.07
SHMT2-231ENST00000557433 RSPH4AQ5TD94 716 aa21.74■■□□□ 1.07
SHMT2-231ENST00000557433 CHMP7Q8WUX9 453 aaPredicted RBP21.73■■□□□ 1.07
SHMT2-231ENST00000557433 ZBTB47Q9UFB7 747 aaPredicted RBP21.72■■□□□ 1.07
SHMT2-231ENST00000557433 TRPM1Q7Z4N2 1603 aa21.71■■□□□ 1.07
SHMT2-231ENST00000557433 JPH4Q96JJ6 628 aa21.7■■□□□ 1.07
SHMT2-231ENST00000557433 GPRASP1Q5JY77 1395 aa21.7■■□□□ 1.07
SHMT2-231ENST00000557433 ATP10BO94823 1461 aa21.7■■□□□ 1.07
SHMT2-231ENST00000557433 RCAN3Q9UKA8 241 aa21.7■■□□□ 1.06
SHMT2-231ENST00000557433 PRAG1Q86YV5 1406 aa21.7■■□□□ 1.06
SHMT2-231ENST00000557433 MS4A1P11836 297 aa21.69■■□□□ 1.06
SHMT2-231ENST00000557433 DCAF11Q8TEB1 546 aa21.69■■□□□ 1.06
SHMT2-231ENST00000557433 FAM135AQ9P2D6 1515 aa21.69■■□□□ 1.06
SHMT2-231ENST00000557433 PAK3O75914 559 aaPredicted RBP21.68■■□□□ 1.06
SHMT2-231ENST00000557433 CCDC141Q6ZP82 1450 aa21.68■■□□□ 1.06
SHMT2-231ENST00000557433 PLEKHH2Q8IVE3 1493 aa21.67■■□□□ 1.06
SHMT2-231ENST00000557433 CCDC144AA2RUR9 1427 aa21.65■■□□□ 1.06
SHMT2-231ENST00000557433 MAST1Q9Y2H9 1570 aa21.64■■□□□ 1.05
SHMT2-231ENST00000557433 EIF2AK4Q9P2K8 1649 aaKnown RBP21.64■■□□□ 1.05
SHMT2-231ENST00000557433 CNGB1Q14028 1251 aaPredicted RBP21.64■■□□□ 1.05
SHMT2-231ENST00000557433 RTL5Q5HYW3 569 aaPredicted RBP21.64■■□□□ 1.05
SHMT2-231ENST00000557433 KDM2AQ9Y2K7 1162 aa21.64■■□□□ 1.05
SHMT2-231ENST00000557433 COL17A1Q9UMD9 1497 aaPredicted RBP21.64■■□□□ 1.05
SHMT2-231ENST00000557433 UNC13BO14795 1591 aa21.63■■□□□ 1.05
SHMT2-231ENST00000557433 BLMP54132 1417 aaPredicted RBP21.62■■□□□ 1.05
SHMT2-231ENST00000557433 PREX2Q70Z35 1606 aa21.61■■□□□ 1.05
SHMT2-231ENST00000557433 PRDM15P57071 1507 aaPredicted RBP21.61■■□□□ 1.05
SHMT2-231ENST00000557433 PER1O15534 1290 aaPredicted RBP21.61■■□□□ 1.05
SHMT2-231ENST00000557433 EXOC6Q8TAG9 804 aa21.59■■□□□ 1.05
SHMT2-231ENST00000557433 SAMD9LQ8IVG5 1584 aa21.59■■□□□ 1.05
SHMT2-231ENST00000557433 NBR1Q14596 966 aa21.57■■□□□ 1.04
SHMT2-231ENST00000557433 USP35Q9P2H5 1018 aa21.57■■□□□ 1.04
SHMT2-231ENST00000557433 ATP10AO60312 1499 aa21.56■■□□□ 1.04
SHMT2-231ENST00000557433 HNRNPMP52272 730 aaKnown RBP eCLIP21.55■■□□□ 1.04
SHMT2-231ENST00000557433 PDE4AP27815 886 aa21.55■■□□□ 1.04
SHMT2-231ENST00000557433 BACH2Q9BYV9 841 aa21.55■■□□□ 1.04
SHMT2-231ENST00000557433 A2MP01023 1474 aa21.54■■□□□ 1.04
SHMT2-231ENST00000557433 IQGAP3Q86VI3 1631 aa21.54■■□□□ 1.04
SHMT2-231ENST00000557433 PLXNC1O60486 1568 aa21.54■■□□□ 1.04
SHMT2-231ENST00000557433 CDC42BPBQ9Y5S2 1711 aa21.54■■□□□ 1.04
SHMT2-231ENST00000557433 ERBINQ96RT1 1412 aa21.52■■□□□ 1.04
SHMT2-231ENST00000557433 ERCC6Q03468 1493 aa21.51■■□□□ 1.03
SHMT2-231ENST00000557433 PLA2R1Q13018 1463 aa21.51■■□□□ 1.03
SHMT2-231ENST00000557433 TESK2Q96S53 571 aa21.51■■□□□ 1.03
SHMT2-231ENST00000557433 TMF1P82094 1093 aa21.5■■□□□ 1.03
SHMT2-231ENST00000557433 FBLN2P98095 1184 aa21.49■■□□□ 1.03
SHMT2-231ENST00000557433 DDRGK1Q96HY6 314 aa21.48■■□□□ 1.03
SHMT2-231ENST00000557433 MAGI2Q86UL8 1455 aa21.48■■□□□ 1.03
SHMT2-231ENST00000557433 PPM1GO15355 546 aaPredicted RBP21.47■■□□□ 1.03
SHMT2-231ENST00000557433 RNF17Q9BXT8 1623 aaKnown RBP21.47■■□□□ 1.03
SHMT2-231ENST00000557433 DISP3Q9P2K9 1392 aa21.46■■□□□ 1.03
SHMT2-231ENST00000557433 DUOX2Q9NRD8 1548 aa21.46■■□□□ 1.03
SHMT2-231ENST00000557433 MYO5CQ9NQX4 1742 aa21.46■■□□□ 1.03
SHMT2-231ENST00000557433 SYCP2Q9BX26 1530 aa21.45■■□□□ 1.02
SHMT2-231ENST00000557433 NBPF1Q3BBV0 1214 aa21.45■■□□□ 1.02
SHMT2-231ENST00000557433 STAC3Q96MF2 364 aa21.43■■□□□ 1.02
SHMT2-231ENST00000557433 PANK3Q9H999 370 aa21.43■■□□□ 1.02
SHMT2-231ENST00000557433 SENP3-EIF4A1A0A087X0R7 540 aa21.42■■□□□ 1.02
SHMT2-231ENST00000557433 CDCA7LQ96GN5 454 aa21.42■■□□□ 1.02
SHMT2-231ENST00000557433 ARHGAP5Q13017 1502 aa21.41■■□□□ 1.02
SHMT2-231ENST00000557433 CLASP1Q7Z460 1538 aa21.4■■□□□ 1.02
SHMT2-231ENST00000557433 CDCA8Q53HL2 280 aa21.39■■□□□ 1.02
SHMT2-231ENST00000557433 SALL2Q9Y467 1007 aaPredicted RBP21.39■■□□□ 1.02
SHMT2-231ENST00000557433 RGL3Q3MIN7 710 aa21.39■■□□□ 1.01
SHMT2-231ENST00000557433 CC2D1BQ5T0F9 858 aaKnown RBP21.39■■□□□ 1.01
SHMT2-231ENST00000557433 NPM2Q86SE8 214 aaKnown RBP21.39■■□□□ 1.01
SHMT2-231ENST00000557433 CRBNQ96SW2 442 aa21.38■■□□□ 1.01
SHMT2-231ENST00000557433 CENPQQ7L2Z9 268 aaPredicted RBP21.36■■□□□ 1.01
SHMT2-231ENST00000557433 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.36■■□□□ 1.01
SHMT2-231ENST00000557433 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.36■■□□□ 1.01
SHMT2-231ENST00000557433 SYNMO15061 1565 aa21.36■■□□□ 1.01
SHMT2-231ENST00000557433 TTC37Q6PGP7 1564 aa21.36■■□□□ 1.01
SHMT2-231ENST00000557433 NPC1L1Q9UHC9 1359 aa21.35■■□□□ 1.01
SHMT2-231ENST00000557433 WDR7Q9Y4E6 1490 aa21.35■■□□□ 1.01
SHMT2-231ENST00000557433 KDM2BQ8NHM5 1336 aa21.34■■□□□ 1.01
SHMT2-231ENST00000557433 IQGAP1P46940 1657 aa21.34■■□□□ 1.01
SHMT2-231ENST00000557433 PIK3C2GO75747 1445 aa21.33■■□□□ 1.01
SHMT2-231ENST00000557433 SCAPERQ9BY12 1400 aa21.33■■□□□ 1
SHMT2-231ENST00000557433 KNSTRNQ9Y448 316 aa21.33■■□□□ 1
SHMT2-231ENST00000557433 EIF3AQ14152 1382 aaKnown RBP21.32■■□□□ 1
SHMT2-231ENST00000557433 NEFMP07197 916 aa21.32■■□□□ 1
SHMT2-231ENST00000557433 WDR43Q15061 677 aaKnown RBP eCLIP21.32■■□□□ 1
SHMT2-231ENST00000557433 ZNF521Q96K83 1311 aa21.31■■□□□ 1
SHMT2-231ENST00000557433 MADDQ8WXG6 1647 aa21.31■■□□□ 1
SHMT2-231ENST00000557433 SLC24A1O60721 1099 aa21.31■■□□□ 1
SHMT2-231ENST00000557433 PLIN1O60240 522 aa21.3■■□□□ 1
SHMT2-231ENST00000557433 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.3■■□□□ 1
SHMT2-231ENST00000557433 ADAMTS8Q9UP79 889 aa21.3■■□□□ 1
SHMT2-231ENST00000557433 PPP2R1AP30153 589 aa21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms