RNA–Protein interactions for RNA: ENST00000556268.1

GTF2A1-204, Transcript of general transcription factor IIA subunit 1, humanhuman

TSL 5

Gene GTF2A1, Length 864 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-204ENST00000556268 WRNQ14191 1432 aaPredicted RBP eCLIP16.07■□□□□ 0.16
GTF2A1-204ENST00000556268 EMP3P54852 163 aa16.05■□□□□ 0.16
GTF2A1-204ENST00000556268 GPR153Q6NV75 609 aa16.05■□□□□ 0.16
GTF2A1-204ENST00000556268 ABCA5Q8WWZ7 1642 aa16.05■□□□□ 0.16
GTF2A1-204ENST00000556268 SLC34A2O95436 690 aa16.04■□□□□ 0.16
GTF2A1-204ENST00000556268 MFSD10Q14728 455 aa16.04■□□□□ 0.16
GTF2A1-204ENST00000556268 DDX27Q96GQ7 796 aaKnown RBP16.04■□□□□ 0.16
GTF2A1-204ENST00000556268 NUP160Q12769 1436 aa16.02■□□□□ 0.16
GTF2A1-204ENST00000556268 PBRM1Q86U86 1689 aa16.02■□□□□ 0.16
GTF2A1-204ENST00000556268 ARSIQ5FYB1 569 aa16.02■□□□□ 0.16
GTF2A1-204ENST00000556268 GRIN2AQ12879 1464 aa16.02■□□□□ 0.15
GTF2A1-204ENST00000556268 KHSRPQ92945 711 aaKnown RBP eCLIP16.01■□□□□ 0.159e-7■■■□□ 16.6
GTF2A1-204ENST00000556268 PCDHGA4Q9Y5G9 962 aa15.99■□□□□ 0.15
GTF2A1-204ENST00000556268 FHAD1B1AJZ9 1412 aa15.98■□□□□ 0.15
GTF2A1-204ENST00000556268 ERCC6L2Q5T890 1561 aa15.96■□□□□ 0.15
GTF2A1-204ENST00000556268 PTCD2Q8WV60 388 aaKnown RBP15.96■□□□□ 0.15
GTF2A1-204ENST00000556268 PLCB2Q00722 1185 aa15.95■□□□□ 0.14
GTF2A1-204ENST00000556268 TOP2BQ02880 1626 aa15.94■□□□□ 0.14
GTF2A1-204ENST00000556268 FAM205CA6NFA0 338 aa15.94■□□□□ 0.14
GTF2A1-204ENST00000556268 JPH4Q96JJ6 628 aa15.94■□□□□ 0.14
GTF2A1-204ENST00000556268 TSHZ2Q9NRE2 1034 aa15.94■□□□□ 0.14
GTF2A1-204ENST00000556268 CEP170Q5SW79 1584 aa15.93■□□□□ 0.14
GTF2A1-204ENST00000556268 NUDT7P0C024 238 aa15.92■□□□□ 0.14
GTF2A1-204ENST00000556268 UPF1Q92900 1129 aaKnown RBP eCLIP15.92■□□□□ 0.14
GTF2A1-204ENST00000556268 ERICH3Q5RHP9 1530 aa15.92■□□□□ 0.14
GTF2A1-204ENST00000556268 ADAMTS12P58397 1594 aa15.92■□□□□ 0.14
GTF2A1-204ENST00000556268 BIVM-ERCC5R4GMW8 1640 aa15.91■□□□□ 0.14
GTF2A1-204ENST00000556268 HS3ST6Q96QI5 342 aa15.91■□□□□ 0.14
GTF2A1-204ENST00000556268 POTEB3A0JP26 581 aa15.9■□□□□ 0.14
GTF2A1-204ENST00000556268 POTEBQ6S5H4 581 aa15.9■□□□□ 0.14
GTF2A1-204ENST00000556268 OXER1Q8TDS5 423 aa15.9■□□□□ 0.14
GTF2A1-204ENST00000556268 ERBB3P21860 1342 aa15.9■□□□□ 0.14
GTF2A1-204ENST00000556268 SHROOM2Q13796 1616 aa15.9■□□□□ 0.14
GTF2A1-204ENST00000556268 PRG4Q92954 1404 aaPredicted RBP15.86■□□□□ 0.13
GTF2A1-204ENST00000556268 TBC1D12O60347 775 aa15.85■□□□□ 0.13
GTF2A1-204ENST00000556268 VARS2Q5ST30 1063 aaKnown RBP15.85■□□□□ 0.13
GTF2A1-204ENST00000556268 CDAN1Q8IWY9 1227 aa15.85■□□□□ 0.13
GTF2A1-204ENST00000556268 EMILIN3Q9NT22 766 aa15.85■□□□□ 0.13
GTF2A1-204ENST00000556268 KDM4FA0A1W2PPD8 638 aa15.83■□□□□ 0.12
GTF2A1-204ENST00000556268 ZNF316A6NFI3 1004 aaPredicted RBP15.83■□□□□ 0.12
GTF2A1-204ENST00000556268 CAMK2BQ13554 666 aa15.82■□□□□ 0.12
GTF2A1-204ENST00000556268 LHX6Q9UPM6 363 aa15.81■□□□□ 0.12
GTF2A1-204ENST00000556268 IGF1RP08069 1367 aa15.8■□□□□ 0.12
GTF2A1-204ENST00000556268 PCDH10Q9P2E7 1040 aa15.8■□□□□ 0.12
GTF2A1-204ENST00000556268 WDR70Q9NW82 654 aa15.78■□□□□ 0.12
GTF2A1-204ENST00000556268 FAM69CQ0P6D2 419 aa15.76■□□□□ 0.11
GTF2A1-204ENST00000556268 MAP3K9P80192 1104 aa15.74■□□□□ 0.11
GTF2A1-204ENST00000556268 ABCC10Q5T3U5 1492 aa15.73■□□□□ 0.11
GTF2A1-204ENST00000556268 KIAA0586Q9BVV6 1533 aa15.73■□□□□ 0.11
GTF2A1-204ENST00000556268 HAP1P54257 671 aaPredicted RBP15.72■□□□□ 0.11
GTF2A1-204ENST00000556268 E2F4Q16254 413 aa15.72■□□□□ 0.11
GTF2A1-204ENST00000556268 DPYSL4O14531 572 aa15.71■□□□□ 0.11
GTF2A1-204ENST00000556268 EVI5O60447 810 aa15.71■□□□□ 0.11
GTF2A1-204ENST00000556268 ZNF687Q8N1G0 1237 aa15.7■□□□□ 0.1
GTF2A1-204ENST00000556268 KIF13AQ9H1H9 1805 aa15.7■□□□□ 0.1
GTF2A1-204ENST00000556268 KIF27Q86VH2 1401 aa15.69■□□□□ 0.1
GTF2A1-204ENST00000556268 RUSC2Q8N2Y8 1516 aa15.68■□□□□ 0.1
GTF2A1-204ENST00000556268 KRTAP3-3Q9BYR6 98 aa15.68■□□□□ 0.1
GTF2A1-204ENST00000556268 KRTAP3-2Q9BYR7 98 aa15.68■□□□□ 0.1
GTF2A1-204ENST00000556268 MAPKBP1O60336 1514 aa15.68■□□□□ 0.1
GTF2A1-204ENST00000556268 PSDA5PKW4 1024 aaPredicted RBP15.66■□□□□ 0.1
GTF2A1-204ENST00000556268 ANO8Q9HCE9 1232 aaPredicted RBP15.65■□□□□ 0.1
GTF2A1-204ENST00000556268 CARMIL1Q5VZK9 1371 aa15.64■□□□□ 0.09
GTF2A1-204ENST00000556268 PTPRGP23470 1445 aa15.63■□□□□ 0.09
GTF2A1-204ENST00000556268 ADCY10Q96PN6 1610 aa15.63■□□□□ 0.09
GTF2A1-204ENST00000556268 PPP4R3BQ5MIZ7 849 aa15.61■□□□□ 0.09
GTF2A1-204ENST00000556268 ZNF454Q8N9F8 522 aa15.6■□□□□ 0.09
GTF2A1-204ENST00000556268 DIP2BQ9P265 1576 aa15.59■□□□□ 0.09
GTF2A1-204ENST00000556268 FOSBP53539 338 aa15.58■□□□□ 0.08
GTF2A1-204ENST00000556268 POTEEQ6S8J3 1075 aa15.58■□□□□ 0.08
GTF2A1-204ENST00000556268 ARIH1Q9Y4X5 557 aaPredicted RBP15.58■□□□□ 0.08
GTF2A1-204ENST00000556268 TNIKQ9UKE5 1360 aa15.58■□□□□ 0.08
GTF2A1-204ENST00000556268 CUL7Q14999 1698 aa15.57■□□□□ 0.08
GTF2A1-204ENST00000556268 PDIA6Q15084 440 aa15.57■□□□□ 0.08
GTF2A1-204ENST00000556268 KCNV2Q8TDN2 545 aa15.56■□□□□ 0.08
GTF2A1-204ENST00000556268 CARMIL2Q6F5E8 1435 aa15.55■□□□□ 0.08
GTF2A1-204ENST00000556268 PBX2P40425 430 aa15.54■□□□□ 0.08
GTF2A1-204ENST00000556268 AXIN2Q9Y2T1 843 aa15.54■□□□□ 0.08
GTF2A1-204ENST00000556268 ABCC2Q92887 1545 aa15.52■□□□□ 0.07
GTF2A1-204ENST00000556268 UHRF1BP1LA0JNW5 1464 aa15.51■□□□□ 0.07
GTF2A1-204ENST00000556268 TTBK1Q5TCY1 1321 aaPredicted RBP15.5■□□□□ 0.07
GTF2A1-204ENST00000556268 SPDYE16A6NNV3 312 aaPredicted RBP15.5■□□□□ 0.07
GTF2A1-204ENST00000556268 KDM2AQ9Y2K7 1162 aa15.5■□□□□ 0.07
GTF2A1-204ENST00000556268 PCDHGA10Q9Y5H3 936 aa15.5■□□□□ 0.07
GTF2A1-204ENST00000556268 PLB1Q6P1J6 1458 aa15.5■□□□□ 0.07
GTF2A1-204ENST00000556268 PLSCR2Q9NRY7 297 aa15.49■□□□□ 0.07
GTF2A1-204ENST00000556268 ASXL2Q76L83 1435 aa15.49■□□□□ 0.07
GTF2A1-204ENST00000556268 ARHGAP33O14559 1287 aa15.48■□□□□ 0.07
GTF2A1-204ENST00000556268 LSM11P83369 360 aaKnown RBP eCLIP15.48■□□□□ 0.075e-28■■■■■ 119.6
GTF2A1-204ENST00000556268 DDX12PQ92771 950 aa15.48■□□□□ 0.07
GTF2A1-204ENST00000556268 ZDHHC16Q969W1 377 aa15.48■□□□□ 0.07
GTF2A1-204ENST00000556268 UACAQ9BZF9 1416 aa15.48■□□□□ 0.07
GTF2A1-204ENST00000556268 DISP1Q96F81 1524 aa15.48■□□□□ 0.07
GTF2A1-204ENST00000556268 PHF14O94880 888 aa15.47■□□□□ 0.07
GTF2A1-204ENST00000556268 PTGER2P43116 358 aa15.47■□□□□ 0.07
GTF2A1-204ENST00000556268 ARHGEF1Q92888 912 aaKnown RBP15.47■□□□□ 0.07
GTF2A1-204ENST00000556268 KDM6BO15054 1643 aa15.46■□□□□ 0.07
GTF2A1-204ENST00000556268 GLI2P10070 1586 aa15.46■□□□□ 0.07
GTF2A1-204ENST00000556268 PSEN2P49810 448 aa15.46■□□□□ 0.07
GTF2A1-204ENST00000556268 P3H3Q8IVL6 736 aa15.46■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms