RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 KIAA1107Q9UPP5 1409 aa19.43■□□□□ 0.7
CUX1-215ENST00000556210 RSPH4AQ5TD94 716 aa19.41■□□□□ 0.7
CUX1-215ENST00000556210 NCOA1Q15788 1441 aa19.41■□□□□ 0.7
CUX1-215ENST00000556210 MORC1Q86VD1 984 aa19.4■□□□□ 0.7
CUX1-215ENST00000556210 NEFMP07197 916 aa19.4■□□□□ 0.7
CUX1-215ENST00000556210 ESF1Q9H501 851 aaKnown RBP19.4■□□□□ 0.7
CUX1-215ENST00000556210 BCL2L13Q9BXK5 485 aa19.39■□□□□ 0.69
CUX1-215ENST00000556210 ADAMTS8Q9UP79 889 aa19.39■□□□□ 0.69
CUX1-215ENST00000556210 RRP1P56182 461 aaKnown RBP19.38■□□□□ 0.69
CUX1-215ENST00000556210 CLUAP1Q96AJ1 413 aa19.38■□□□□ 0.69
CUX1-215ENST00000556210 SRPK2P78362 688 aaKnown RBP19.38■□□□□ 0.69
CUX1-215ENST00000556210 APAF1O14727 1248 aa19.37■□□□□ 0.69
CUX1-215ENST00000556210 SLC4A3P48751 1232 aa19.37■□□□□ 0.69
CUX1-215ENST00000556210 CFAP70Q5T0N1 1121 aa19.37■□□□□ 0.69
CUX1-215ENST00000556210 CRBNQ96SW2 442 aa19.37■□□□□ 0.69
CUX1-215ENST00000556210 GRIN2AQ12879 1464 aa19.37■□□□□ 0.69
CUX1-215ENST00000556210 TMEM132EQ6IEE7 984 aa19.37■□□□□ 0.69
CUX1-215ENST00000556210 MAGI3Q5TCQ9 1506 aa19.37■□□□□ 0.69
CUX1-215ENST00000556210 CAMSAP2Q08AD1 1489 aa19.36■□□□□ 0.69
CUX1-215ENST00000556210 POGKQ9P215 609 aa19.36■□□□□ 0.69
CUX1-215ENST00000556210 UGGT2Q9NYU1 1516 aa19.36■□□□□ 0.69
CUX1-215ENST00000556210 IPO9Q96P70 1041 aaKnown RBP19.35■□□□□ 0.69
CUX1-215ENST00000556210 SOX12O15370 315 aa19.35■□□□□ 0.69
CUX1-215ENST00000556210 KANK1Q14678 1352 aa19.35■□□□□ 0.69
CUX1-215ENST00000556210 NUP153P49790 1475 aaKnown RBP19.35■□□□□ 0.69
CUX1-215ENST00000556210 EIF5BO60841 1220 aaKnown RBP19.33■□□□□ 0.68
CUX1-215ENST00000556210 RPRD2Q5VT52 1461 aaKnown RBP19.32■□□□□ 0.68
CUX1-215ENST00000556210 PAK3O75914 559 aaPredicted RBP19.32■□□□□ 0.68
CUX1-215ENST00000556210 ROCK1Q13464 1354 aa19.32■□□□□ 0.68
CUX1-215ENST00000556210 U2AF1L5P0DN76 240 aaPredicted RBP19.31■□□□□ 0.68
CUX1-215ENST00000556210 U2AF1Q01081 240 aaKnown RBP eCLIP19.31■□□□□ 0.685e-6■□□□□ 11.2
CUX1-215ENST00000556210 GOLGA2Q08379 1002 aa19.31■□□□□ 0.68
CUX1-215ENST00000556210 WASHC2CQ9Y4E1 1318 aa19.31■□□□□ 0.68
CUX1-215ENST00000556210 GPATCH8Q9UKJ3 1502 aaKnown RBP19.3■□□□□ 0.68
CUX1-215ENST00000556210 ARHGAP5Q13017 1502 aa19.29■□□□□ 0.68
CUX1-215ENST00000556210 CFAP43Q8NDM7 1665 aa19.29■□□□□ 0.68
CUX1-215ENST00000556210 CFAP53Q96M91 514 aa19.29■□□□□ 0.68
CUX1-215ENST00000556210 SYNJ2O15056 1496 aa19.27■□□□□ 0.68
CUX1-215ENST00000556210 CTTNBP2Q8WZ74 1663 aa19.27■□□□□ 0.67
CUX1-215ENST00000556210 SPRYD3Q8NCJ5 442 aa19.26■□□□□ 0.67
CUX1-215ENST00000556210 MAGI1Q96QZ7 1491 aaPredicted RBP19.26■□□□□ 0.67
CUX1-215ENST00000556210 KIF21AQ7Z4S6 1674 aa19.26■□□□□ 0.67
CUX1-215ENST00000556210 PDE4AP27815 886 aa19.25■□□□□ 0.67
CUX1-215ENST00000556210 NUTM2FA1L443 756 aa19.25■□□□□ 0.67
CUX1-215ENST00000556210 FTSJ3Q8IY81 847 aaKnown RBP19.25■□□□□ 0.67
CUX1-215ENST00000556210 KDM6BO15054 1643 aa19.24■□□□□ 0.67
CUX1-215ENST00000556210 ARID4BQ4LE39 1312 aaPredicted RBP19.24■□□□□ 0.67
CUX1-215ENST00000556210 UPF2Q9HAU5 1272 aaKnown RBP19.21■□□□□ 0.67
CUX1-215ENST00000556210 CYB5RLQ6IPT4 315 aa19.21■□□□□ 0.67
CUX1-215ENST00000556210 COG6Q9Y2V7 657 aa19.21■□□□□ 0.67
CUX1-215ENST00000556210 PPP2R1AP30153 589 aa19.2■□□□□ 0.66
CUX1-215ENST00000556210 PDE3BQ13370 1112 aa19.2■□□□□ 0.66
CUX1-215ENST00000556210 SLC12A5Q9H2X9 1139 aa19.2■□□□□ 0.66
CUX1-215ENST00000556210 C20orf194Q5TEA3 1177 aa19.2■□□□□ 0.66
CUX1-215ENST00000556210 ATP10BO94823 1461 aa19.19■□□□□ 0.66
CUX1-215ENST00000556210 MAPK8IP3Q9UPT6 1336 aa19.19■□□□□ 0.66
CUX1-215ENST00000556210 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.19■□□□□ 0.663e-6■□□□□ 10.3
CUX1-215ENST00000556210 SCAPERQ9BY12 1400 aa19.19■□□□□ 0.66
CUX1-215ENST00000556210 TCERG1O14776 1098 aaKnown RBP19.19■□□□□ 0.66
CUX1-215ENST00000556210 BRD4O60885 1362 aaPredicted RBP19.18■□□□□ 0.66
CUX1-215ENST00000556210 ZBTB7CA1YPR0 619 aa19.18■□□□□ 0.66
CUX1-215ENST00000556210 DISP1Q96F81 1524 aa19.17■□□□□ 0.66
CUX1-215ENST00000556210 PLEKHH2Q8IVE3 1493 aa19.17■□□□□ 0.66
CUX1-215ENST00000556210 MINK1Q8N4C8 1332 aaPredicted RBP19.17■□□□□ 0.66
CUX1-215ENST00000556210 DDRGK1Q96HY6 314 aa19.16■□□□□ 0.66
CUX1-215ENST00000556210 RAPGEF3O95398 923 aa19.16■□□□□ 0.66
CUX1-215ENST00000556210 WDR62O43379 1518 aa19.15■□□□□ 0.66
CUX1-215ENST00000556210 ELL2O00472 640 aaPredicted RBP19.15■□□□□ 0.66
CUX1-215ENST00000556210 BCAR3O75815 825 aa19.15■□□□□ 0.66
CUX1-215ENST00000556210 HSP90AA1P07900 732 aaKnown RBP19.15■□□□□ 0.66
CUX1-215ENST00000556210 CABP2Q9NPB3 220 aa19.14■□□□□ 0.65
CUX1-215ENST00000556210 C14orf37Q86TY3 774 aa19.14■□□□□ 0.65
CUX1-215ENST00000556210 DISP3Q9P2K9 1392 aa19.13■□□□□ 0.65
CUX1-215ENST00000556210 SLKQ9H2G2 1235 aaPredicted RBP19.13■□□□□ 0.65
CUX1-215ENST00000556210 ABCA5Q8WWZ7 1642 aa19.13■□□□□ 0.65
CUX1-215ENST00000556210 PANK1Q8TE04 598 aa19.13■□□□□ 0.65
CUX1-215ENST00000556210 TCOF1Q13428 1488 aaKnown RBP19.13■□□□□ 0.65
CUX1-215ENST00000556210 GGNBP2Q9H3C7 697 aa19.11■□□□□ 0.65
CUX1-215ENST00000556210 ADAMTS12P58397 1594 aa19.11■□□□□ 0.65
CUX1-215ENST00000556210 PZPP20742 1482 aa19.1■□□□□ 0.65
CUX1-215ENST00000556210 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.1■□□□□ 0.65
CUX1-215ENST00000556210 CENPJQ9HC77 1338 aaPredicted RBP19.1■□□□□ 0.65
CUX1-215ENST00000556210 SAMD9Q5K651 1589 aa19.1■□□□□ 0.65
CUX1-215ENST00000556210 RAPGEF6Q8TEU7 1601 aa19.1■□□□□ 0.65
CUX1-215ENST00000556210 SMG6Q86US8 1419 aaKnown RBP19.09■□□□□ 0.65
CUX1-215ENST00000556210 MTHFSP49914 203 aa19.08■□□□□ 0.65
CUX1-215ENST00000556210 EIF3AQ14152 1382 aaKnown RBP19.08■□□□□ 0.65
CUX1-215ENST00000556210 ERBINQ96RT1 1412 aa19.07■□□□□ 0.64
CUX1-215ENST00000556210 CCDC141Q6ZP82 1450 aa19.07■□□□□ 0.64
CUX1-215ENST00000556210 APBB1O00213 710 aa19.07■□□□□ 0.64
CUX1-215ENST00000556210 ADGRF5Q8IZF2 1346 aa19.07■□□□□ 0.64
CUX1-215ENST00000556210 KIAA0556O60303 1618 aa19.07■□□□□ 0.64
CUX1-215ENST00000556210 DHX29Q7Z478 1369 aaKnown RBP19.06■□□□□ 0.64
CUX1-215ENST00000556210 ITPRIPQ8IWB1 547 aa19.06■□□□□ 0.64
CUX1-215ENST00000556210 SMC4Q9NTJ3 1288 aa19.05■□□□□ 0.64
CUX1-215ENST00000556210 OSCARQ8IYS5 282 aa19.04■□□□□ 0.64
CUX1-215ENST00000556210 IL27Q8NEV9 243 aa19.03■□□□□ 0.64
CUX1-215ENST00000556210 TEX14Q8IWB6 1497 aa19.03■□□□□ 0.64
CUX1-215ENST00000556210 TARBP1Q13395 1621 aaKnown RBP19.02■□□□□ 0.64
CUX1-215ENST00000556210 TCP11L2Q8N4U5 519 aa19.02■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms