RNA–Protein interactions for RNA: ENST00000555890.5

SLIRP-204, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 471 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-204ENST00000555890 TAOK2Q9UL54 1235 aa10.74□□□□□ -0.69
SLIRP-204ENST00000555890 GOLGA3Q08378 1498 aa10.74□□□□□ -0.69
SLIRP-204ENST00000555890 FRMPD1Q5SYB0 1578 aa10.73□□□□□ -0.69
SLIRP-204ENST00000555890 MEX3CQ5U5Q3 659 aaKnown RBP10.72□□□□□ -0.69
SLIRP-204ENST00000555890 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.72□□□□□ -0.69
SLIRP-204ENST00000555890 NEO1Q92859 1461 aa10.72□□□□□ -0.69
SLIRP-204ENST00000555890 ABCA8O94911 1581 aa10.71□□□□□ -0.69
SLIRP-204ENST00000555890 PRKCSHP14314 528 aaPredicted RBP10.71□□□□□ -0.69
SLIRP-204ENST00000555890 UBTFP17480 764 aaKnown RBP10.71□□□□□ -0.69
SLIRP-204ENST00000555890 PLA2R1Q13018 1463 aa10.71□□□□□ -0.69
SLIRP-204ENST00000555890 BBXQ8WY36 941 aaPredicted RBP10.7□□□□□ -0.7
SLIRP-204ENST00000555890 TCOF1Q13428 1488 aaKnown RBP10.69□□□□□ -0.7
SLIRP-204ENST00000555890 SIGLEC1Q9BZZ2 1709 aa10.69□□□□□ -0.7
SLIRP-204ENST00000555890 HRCP23327 699 aa10.68□□□□□ -0.7
SLIRP-204ENST00000555890 RAPGEF2Q9Y4G8 1499 aa10.67□□□□□ -0.7
SLIRP-204ENST00000555890 FAM135BQ49AJ0 1406 aa10.67□□□□□ -0.7
SLIRP-204ENST00000555890 SPOCK2Q92563 424 aa10.66□□□□□ -0.7
SLIRP-204ENST00000555890 ABCA9Q8IUA7 1624 aa10.66□□□□□ -0.7
SLIRP-204ENST00000555890 ESF1Q9H501 851 aaKnown RBP10.65□□□□□ -0.7
SLIRP-204ENST00000555890 DENND4BO75064 1496 aaPredicted RBP10.65□□□□□ -0.7
SLIRP-204ENST00000555890 RGS12O14924 1447 aa10.65□□□□□ -0.7
SLIRP-204ENST00000555890 ATP10BO94823 1461 aa10.64□□□□□ -0.71
SLIRP-204ENST00000555890 KLHL34Q8N239 644 aa10.64□□□□□ -0.71
SLIRP-204ENST00000555890 PLSCR2Q9NRY7 297 aa10.64□□□□□ -0.71
SLIRP-204ENST00000555890 NHSL1Q5SYE7 1610 aa10.64□□□□□ -0.71
SLIRP-204ENST00000555890 FHOD3Q2V2M9 1422 aa10.64□□□□□ -0.71
SLIRP-204ENST00000555890 CEP162Q5TB80 1403 aa10.64□□□□□ -0.71
SLIRP-204ENST00000555890 JCADQ9P266 1359 aa10.64□□□□□ -0.71
SLIRP-204ENST00000555890 ZFYVE16Q7Z3T8 1539 aa10.63□□□□□ -0.71
SLIRP-204ENST00000555890 ECM2O94769 699 aaPredicted RBP10.63□□□□□ -0.71
SLIRP-204ENST00000555890 PRXQ9BXM0 1461 aa10.62□□□□□ -0.71
SLIRP-204ENST00000555890 RBM6P78332 1123 aaKnown RBP10.62□□□□□ -0.71
SLIRP-204ENST00000555890 EFCAB5A4FU69 1503 aa10.62□□□□□ -0.71
SLIRP-204ENST00000555890 MAGI2Q86UL8 1455 aa10.61□□□□□ -0.71
SLIRP-204ENST00000555890 PRKAR2AP13861 404 aaKnown RBP10.61□□□□□ -0.71
SLIRP-204ENST00000555890 PAXIP1Q6ZW49 1069 aaPredicted RBP10.61□□□□□ -0.71
SLIRP-204ENST00000555890 KDM2AQ9Y2K7 1162 aa10.61□□□□□ -0.71
SLIRP-204ENST00000555890 GABBR2O75899 941 aa10.6□□□□□ -0.71
SLIRP-204ENST00000555890 RICTORQ6R327 1708 aa10.6□□□□□ -0.71
SLIRP-204ENST00000555890 PSDA5PKW4 1024 aaPredicted RBP10.59□□□□□ -0.71
SLIRP-204ENST00000555890 ARID3CA6NKF2 412 aa10.59□□□□□ -0.71
SLIRP-204ENST00000555890 GIGYF1O75420 1035 aaPredicted RBP10.59□□□□□ -0.71
SLIRP-204ENST00000555890 TNS4Q8IZW8 715 aa10.59□□□□□ -0.71
SLIRP-204ENST00000555890 SPATA31A6Q5VVP1 1343 aa10.58□□□□□ -0.71
SLIRP-204ENST00000555890 RNF17Q9BXT8 1623 aaKnown RBP10.58□□□□□ -0.72
SLIRP-204ENST00000555890 C19orf67A6NJJ6 358 aa10.58□□□□□ -0.72
SLIRP-204ENST00000555890 CFAP44Q96MT7 982 aa10.57□□□□□ -0.72
SLIRP-204ENST00000555890 ATP10AO60312 1499 aa10.56□□□□□ -0.72
SLIRP-204ENST00000555890 TRIM26Q12899 539 aaPredicted RBP10.56□□□□□ -0.72
SLIRP-204ENST00000555890 TPRNQ4KMQ1 711 aa10.56□□□□□ -0.72
SLIRP-204ENST00000555890 COL13A1Q5TAT6 717 aaPredicted RBP10.56□□□□□ -0.72
SLIRP-204ENST00000555890 STAG3Q9UJ98 1225 aa10.56□□□□□ -0.72
SLIRP-204ENST00000555890 CLIP1P30622 1438 aa10.56□□□□□ -0.72
SLIRP-204ENST00000555890 NGLY1Q96IV0 654 aa10.55□□□□□ -0.72
SLIRP-204ENST00000555890 PCGF6Q9BYE7 350 aa10.55□□□□□ -0.72
SLIRP-204ENST00000555890 QTRT2Q9H974 415 aaKnown RBP10.55□□□□□ -0.72
SLIRP-204ENST00000555890 NPATQ14207 1427 aa10.55□□□□□ -0.72
SLIRP-204ENST00000555890 ZMYM4Q5VZL5 1548 aa10.54□□□□□ -0.72
SLIRP-204ENST00000555890 C3P01024 1663 aa10.54□□□□□ -0.72
SLIRP-204ENST00000555890 C9orf84Q5VXU9 1444 aa10.54□□□□□ -0.72
SLIRP-204ENST00000555890 LRP6O75581 1613 aa10.53□□□□□ -0.72
SLIRP-204ENST00000555890 VWDEQ8N2E2 1590 aa10.52□□□□□ -0.72
SLIRP-204ENST00000555890 AFF2P51816 1311 aa10.52□□□□□ -0.73
SLIRP-204ENST00000555890 SPDYE2BA6NHP3 402 aa10.51□□□□□ -0.73
SLIRP-204ENST00000555890 SPDYE6P0CI01 402 aa10.51□□□□□ -0.73
SLIRP-204ENST00000555890 SPDYE2Q495Y8 402 aa10.51□□□□□ -0.73
SLIRP-204ENST00000555890 SPRYD3Q8NCJ5 442 aa10.51□□□□□ -0.73
SLIRP-204ENST00000555890 CLEC11AQ9Y240 323 aa10.51□□□□□ -0.73
SLIRP-204ENST00000555890 CTTNBP2Q8WZ74 1663 aa10.5□□□□□ -0.73
SLIRP-204ENST00000555890 SPDYE1Q8NFV5 336 aaPredicted RBP10.5□□□□□ -0.73
SLIRP-204ENST00000555890 HECW1Q76N89 1606 aa10.5□□□□□ -0.73
SLIRP-204ENST00000555890 CDK13Q14004 1512 aaKnown RBP10.49□□□□□ -0.73
SLIRP-204ENST00000555890 RGL2O15211 777 aa10.48□□□□□ -0.73
SLIRP-204ENST00000555890 DEFB132Q7Z7B7 95 aa10.48□□□□□ -0.73
SLIRP-204ENST00000555890 P3H3Q8IVL6 736 aa10.48□□□□□ -0.73
SLIRP-204ENST00000555890 PLCD3Q8N3E9 789 aa10.48□□□□□ -0.73
SLIRP-204ENST00000555890 BCL9LQ86UU0 1499 aa10.48□□□□□ -0.73
SLIRP-204ENST00000555890 EP400Q96L91 3159 aa10.47□□□□□ -0.73
SLIRP-204ENST00000555890 RANGAP1P46060 587 aaPredicted RBP10.47□□□□□ -0.73
SLIRP-204ENST00000555890 VPS8Q8N3P4 1428 aa10.47□□□□□ -0.73
SLIRP-204ENST00000555890 ZNF692Q9BU19 519 aaPredicted RBP10.46□□□□□ -0.73
SLIRP-204ENST00000555890 CNTLNQ9NXG0 1405 aa10.46□□□□□ -0.74
SLIRP-204ENST00000555890 NWD1Q149M9 1564 aa10.45□□□□□ -0.74
SLIRP-204ENST00000555890 SF3B2Q13435 895 aaKnown RBP10.45□□□□□ -0.74
SLIRP-204ENST00000555890 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP10.44□□□□□ -0.74
SLIRP-204ENST00000555890 BLMP54132 1417 aaPredicted RBP10.44□□□□□ -0.74
SLIRP-204ENST00000555890 NUP153P49790 1475 aaKnown RBP10.43□□□□□ -0.74
SLIRP-204ENST00000555890 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.43□□□□□ -0.74
SLIRP-204ENST00000555890 ANKLE2Q86XL3 938 aa10.43□□□□□ -0.74
SLIRP-204ENST00000555890 TSHZ2Q9NRE2 1034 aa10.43□□□□□ -0.74
SLIRP-204ENST00000555890 FGD6Q6ZV73 1430 aa10.42□□□□□ -0.74
SLIRP-204ENST00000555890 HSPA6P17066 643 aa10.42□□□□□ -0.74
SLIRP-204ENST00000555890 PPARGC1BQ86YN6 1023 aaKnown RBP10.42□□□□□ -0.74
SLIRP-204ENST00000555890 CEP170BQ9Y4F5 1589 aaPredicted RBP10.42□□□□□ -0.74
SLIRP-204ENST00000555890 SCAPERQ9BY12 1400 aa10.41□□□□□ -0.74
SLIRP-204ENST00000555890 SYNMO15061 1565 aa10.41□□□□□ -0.74
SLIRP-204ENST00000555890 MIER1Q8N108 512 aa10.41□□□□□ -0.74
SLIRP-204ENST00000555890 CFAP74Q9C0B2 1584 aa10.4□□□□□ -0.74
SLIRP-204ENST00000555890 ARHGAP35Q9NRY4 1499 aa10.4□□□□□ -0.74
SLIRP-204ENST00000555890 PLEKHD1A6NEE1 506 aa10.39□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms