RNA–Protein interactions for RNA: ENST00000553709.5

ARHGEF40-202, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 1 (best)

Gene ARHGEF40, Length 5,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-202ENST00000553709 RWDD1Q9H446 243 aaPredicted RBP19.48■□□□□ 0.71
ARHGEF40-202ENST00000553709 SYNJ2O15056 1496 aa19.48■□□□□ 0.71
ARHGEF40-202ENST00000553709 SPRYD3Q8NCJ5 442 aa19.48■□□□□ 0.71
ARHGEF40-202ENST00000553709 FGD1P98174 961 aa19.48■□□□□ 0.71
ARHGEF40-202ENST00000553709 PDE3BQ13370 1112 aa19.47■□□□□ 0.71
ARHGEF40-202ENST00000553709 MCCP23508 829 aa19.46■□□□□ 0.71
ARHGEF40-202ENST00000553709 GOLGA2Q08379 1002 aa19.46■□□□□ 0.71
ARHGEF40-202ENST00000553709 RTF1Q92541 710 aaKnown RBP19.45■□□□□ 0.7
ARHGEF40-202ENST00000553709 CALD1Q05682 793 aaKnown RBP19.45■□□□□ 0.7
ARHGEF40-202ENST00000553709 GRIN2AQ12879 1464 aa19.45■□□□□ 0.7
ARHGEF40-202ENST00000553709 ITPRIPQ8IWB1 547 aa19.44■□□□□ 0.7
ARHGEF40-202ENST00000553709 ZNF608Q9ULD9 1512 aaPredicted RBP19.43■□□□□ 0.7
ARHGEF40-202ENST00000553709 PCF11O94913 1555 aaKnown RBP19.43■□□□□ 0.7
ARHGEF40-202ENST00000553709 KIF15Q9NS87 1388 aa19.42■□□□□ 0.7
ARHGEF40-202ENST00000553709 KIF3BO15066 747 aa19.42■□□□□ 0.7
ARHGEF40-202ENST00000553709 ZNF644Q9H582 1327 aaPredicted RBP19.42■□□□□ 0.7
ARHGEF40-202ENST00000553709 MAP3K1Q13233 1512 aa19.41■□□□□ 0.7
ARHGEF40-202ENST00000553709 PMFBP1Q8TBY8 1022 aa19.41■□□□□ 0.7
ARHGEF40-202ENST00000553709 IPO9Q96P70 1041 aaKnown RBP19.41■□□□□ 0.7
ARHGEF40-202ENST00000553709 MYBBP1AQ9BQG0 1328 aaKnown RBP19.39■□□□□ 0.69
ARHGEF40-202ENST00000553709 GOLGA6L4A6NEF3 574 aa19.39■□□□□ 0.69
ARHGEF40-202ENST00000553709 MIA2Q96PC5 1412 aa19.38■□□□□ 0.69
ARHGEF40-202ENST00000553709 ST20-MTHFSA0A0A6YYL1 179 aa19.38■□□□□ 0.69
ARHGEF40-202ENST00000553709 APBB1O00213 710 aa19.38■□□□□ 0.69
ARHGEF40-202ENST00000553709 PRKRIP1Q9H875 184 aaPredicted RBP19.38■□□□□ 0.69
ARHGEF40-202ENST00000553709 EPRSP07814 1512 aaKnown RBP19.37■□□□□ 0.69
ARHGEF40-202ENST00000553709 TROQ12816 1431 aaPredicted RBP19.37■□□□□ 0.69
ARHGEF40-202ENST00000553709 NAP1L2Q9ULW6 460 aaPredicted RBP19.37■□□□□ 0.69
ARHGEF40-202ENST00000553709 CCDC146Q8IYE0 955 aa19.37■□□□□ 0.69
ARHGEF40-202ENST00000553709 SLKQ9H2G2 1235 aaPredicted RBP19.37■□□□□ 0.69
ARHGEF40-202ENST00000553709 UACAQ9BZF9 1416 aa19.37■□□□□ 0.69
ARHGEF40-202ENST00000553709 GOLGA6L6A8MZA4 724 aa19.37■□□□□ 0.69
ARHGEF40-202ENST00000553709 SUPT6HQ7KZ85 1726 aaKnown RBP19.36■□□□□ 0.69
ARHGEF40-202ENST00000553709 SMC4Q9NTJ3 1288 aa19.36■□□□□ 0.69
ARHGEF40-202ENST00000553709 GBP4Q96PP9 640 aa19.36■□□□□ 0.69
ARHGEF40-202ENST00000553709 TAOK2Q9UL54 1235 aa19.35■□□□□ 0.69
ARHGEF40-202ENST00000553709 CENPJQ9HC77 1338 aaPredicted RBP19.35■□□□□ 0.69
ARHGEF40-202ENST00000553709 TERF2IPQ9NYB0 399 aa19.34■□□□□ 0.69
ARHGEF40-202ENST00000553709 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.34■□□□□ 0.695e-7■□□□□ 10.3
ARHGEF40-202ENST00000553709 KIF21AQ7Z4S6 1674 aa19.34■□□□□ 0.69
ARHGEF40-202ENST00000553709 MSNP26038 577 aaKnown RBP19.34■□□□□ 0.69
ARHGEF40-202ENST00000553709 CCDC144AA2RUR9 1427 aa19.34■□□□□ 0.69
ARHGEF40-202ENST00000553709 PTMSP20962 102 aa19.32■□□□□ 0.68
ARHGEF40-202ENST00000553709 NRDCO43847 1150 aa19.32■□□□□ 0.68
ARHGEF40-202ENST00000553709 ZBED9Q6R2W3 1325 aa19.31■□□□□ 0.68
ARHGEF40-202ENST00000553709 CYB5RLQ6IPT4 315 aa19.31■□□□□ 0.68
ARHGEF40-202ENST00000553709 CLUAP1Q96AJ1 413 aa19.31■□□□□ 0.68
ARHGEF40-202ENST00000553709 PANK3Q9H999 370 aa19.31■□□□□ 0.68
ARHGEF40-202ENST00000553709 CDK13Q14004 1512 aaKnown RBP19.31■□□□□ 0.68
ARHGEF40-202ENST00000553709 MFAP1P55081 439 aaKnown RBP19.3■□□□□ 0.68
ARHGEF40-202ENST00000553709 KIAA1211Q6ZU35 1233 aa19.3■□□□□ 0.68
ARHGEF40-202ENST00000553709 USP47Q96K76 1375 aa19.29■□□□□ 0.68
ARHGEF40-202ENST00000553709 GZF1Q9H116 711 aaPredicted RBP19.27■□□□□ 0.68
ARHGEF40-202ENST00000553709 ARHGAP5Q13017 1502 aa19.27■□□□□ 0.67
ARHGEF40-202ENST00000553709 WASHC2CQ9Y4E1 1318 aa19.26■□□□□ 0.67
ARHGEF40-202ENST00000553709 ANKRD50Q9ULJ7 1429 aa19.26■□□□□ 0.67
ARHGEF40-202ENST00000553709 CHAF1AQ13111 956 aaPredicted RBP19.26■□□□□ 0.67
ARHGEF40-202ENST00000553709 STK31Q9BXU1 1019 aa19.25■□□□□ 0.67
ARHGEF40-202ENST00000553709 NPHP1O15259 732 aa19.25■□□□□ 0.67
ARHGEF40-202ENST00000553709 HFM1A2PYH4 1435 aa19.24■□□□□ 0.67
ARHGEF40-202ENST00000553709 PAK3O75914 559 aaPredicted RBP19.24■□□□□ 0.67
ARHGEF40-202ENST00000553709 TRAK1Q9UPV9 953 aa19.24■□□□□ 0.67
ARHGEF40-202ENST00000553709 NUTM2DQ5VT03 806 aaPredicted RBP19.24■□□□□ 0.67
ARHGEF40-202ENST00000553709 CTTNBP2Q8WZ74 1663 aa19.24■□□□□ 0.67
ARHGEF40-202ENST00000553709 RRP1P56182 461 aaKnown RBP19.23■□□□□ 0.67
ARHGEF40-202ENST00000553709 CHMP4AQ9BY43 222 aa19.23■□□□□ 0.67
ARHGEF40-202ENST00000553709 CENPQQ7L2Z9 268 aaPredicted RBP19.23■□□□□ 0.67
ARHGEF40-202ENST00000553709 HMMRO75330 724 aa19.22■□□□□ 0.67
ARHGEF40-202ENST00000553709 PLB1Q6P1J6 1458 aa19.22■□□□□ 0.67
ARHGEF40-202ENST00000553709 LMOD3Q0VAK6 560 aa19.22■□□□□ 0.67
ARHGEF40-202ENST00000553709 EXOC6Q8TAG9 804 aa19.2■□□□□ 0.66
ARHGEF40-202ENST00000553709 ADAMTS12P58397 1594 aa19.2■□□□□ 0.66
ARHGEF40-202ENST00000553709 DRC7Q8IY82 874 aa19.2■□□□□ 0.66
ARHGEF40-202ENST00000553709 RRP7AQ9Y3A4 280 aaKnown RBP19.2■□□□□ 0.66
ARHGEF40-202ENST00000553709 WDR62O43379 1518 aa19.2■□□□□ 0.66
ARHGEF40-202ENST00000553709 PDE4AP27815 886 aa19.2■□□□□ 0.66
ARHGEF40-202ENST00000553709 PLIN1O60240 522 aa19.19■□□□□ 0.66
ARHGEF40-202ENST00000553709 PLEKHH2Q8IVE3 1493 aa19.19■□□□□ 0.66
ARHGEF40-202ENST00000553709 GOLGA6L3A6NEY3 463 aa19.18■□□□□ 0.66
ARHGEF40-202ENST00000553709 E9PSI1 815 aa19.18■□□□□ 0.66
ARHGEF40-202ENST00000553709 DAPK1P53355 1430 aa19.18■□□□□ 0.66
ARHGEF40-202ENST00000553709 THOC2Q8NI27 1593 aaKnown RBP19.17■□□□□ 0.66
ARHGEF40-202ENST00000553709 FAM161AQ3B820 660 aa19.17■□□□□ 0.66
ARHGEF40-202ENST00000553709 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.16■□□□□ 0.66
ARHGEF40-202ENST00000553709 SYAP1Q96A49 352 aaPredicted RBP19.16■□□□□ 0.66
ARHGEF40-202ENST00000553709 C9orf84Q5VXU9 1444 aa19.16■□□□□ 0.66
ARHGEF40-202ENST00000553709 CRBNQ96SW2 442 aa19.15■□□□□ 0.66
ARHGEF40-202ENST00000553709 SLC4A10Q6U841 1118 aa19.15■□□□□ 0.66
ARHGEF40-202ENST00000553709 TRIM6-TRIM34B2RNG4 842 aa19.15■□□□□ 0.66
ARHGEF40-202ENST00000553709 USP35Q9P2H5 1018 aa19.14■□□□□ 0.65
ARHGEF40-202ENST00000553709 CGNL1Q0VF96 1302 aa19.14■□□□□ 0.65
ARHGEF40-202ENST00000553709 HDAC5Q9UQL6 1122 aa19.14■□□□□ 0.65
ARHGEF40-202ENST00000553709 PTPN23Q9H3S7 1636 aa19.13■□□□□ 0.65
ARHGEF40-202ENST00000553709 CCDC7Q96M83 1385 aa19.13■□□□□ 0.65
ARHGEF40-202ENST00000553709 TULP1O00294 542 aaPredicted RBP19.12■□□□□ 0.65
ARHGEF40-202ENST00000553709 CSB-PGBD3P0DP91 1061 aa19.12■□□□□ 0.65
ARHGEF40-202ENST00000553709 KIAA2012Q0VF49 1180 aa19.12■□□□□ 0.65
ARHGEF40-202ENST00000553709 GNL2Q13823 731 aaKnown RBP19.12■□□□□ 0.65
ARHGEF40-202ENST00000553709 ABCA5Q8WWZ7 1642 aa19.12■□□□□ 0.65
ARHGEF40-202ENST00000553709 BCL2L13Q9BXK5 485 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 9.1 ms