RNA–Protein interactions for RNA: ENST00000553683.1

VRK1-202, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 247 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-202ENST00000553683 KRTAP3-3Q9BYR6 98 aa8.35□□□□□ -1.07
VRK1-202ENST00000553683 KRTAP3-2Q9BYR7 98 aa8.35□□□□□ -1.07
VRK1-202ENST00000553683 MLLT3P42568 568 aaPredicted RBP8.34□□□□□ -1.07
VRK1-202ENST00000553683 C6orf132Q5T0Z8 1188 aa8.34□□□□□ -1.07
VRK1-202ENST00000553683 POTEEQ6S8J3 1075 aa8.34□□□□□ -1.07
VRK1-202ENST00000553683 PPP1R3GB7ZBB8 358 aa8.33□□□□□ -1.08
VRK1-202ENST00000553683 ONECUT3O60422 494 aaPredicted RBP8.33□□□□□ -1.08
VRK1-202ENST00000553683 LSM11P83369 360 aaKnown RBP eCLIP8.33□□□□□ -1.08
VRK1-202ENST00000553683 MAP3K7O43318 606 aa8.32□□□□□ -1.08
VRK1-202ENST00000553683 KCNK17Q96T54 332 aa8.31□□□□□ -1.08
VRK1-202ENST00000553683 RBM27Q9P2N5 1060 aaKnown RBP8.3□□□□□ -1.08
VRK1-202ENST00000553683 PSEN2P49810 448 aa8.29□□□□□ -1.08
VRK1-202ENST00000553683 PRIM1P49642 420 aaKnown RBP8.28□□□□□ -1.08
VRK1-202ENST00000553683 RBM33Q96EV2 1170 aaKnown RBP8.28□□□□□ -1.08
VRK1-202ENST00000553683 ZBED2Q9BTP6 218 aa8.28□□□□□ -1.08
VRK1-202ENST00000553683 AXIN2Q9Y2T1 843 aa8.28□□□□□ -1.08
VRK1-202ENST00000553683 BCANQ96GW7 911 aa8.27□□□□□ -1.09
VRK1-202ENST00000553683 TSR1Q2NL82 804 aaKnown RBP8.26□□□□□ -1.09
VRK1-202ENST00000553683 DMRTA1Q5VZB9 504 aa8.26□□□□□ -1.09
VRK1-202ENST00000553683 ADGRD1Q6QNK2 874 aa8.26□□□□□ -1.09
VRK1-202ENST00000553683 VPS9D1Q9Y2B5 631 aa8.26□□□□□ -1.09
VRK1-202ENST00000553683 COL9A1P20849 921 aa8.25□□□□□ -1.09
VRK1-202ENST00000553683 NPDC1Q9NQX5 325 aaPredicted RBP8.25□□□□□ -1.09
VRK1-202ENST00000553683 HRO43593 1189 aa8.24□□□□□ -1.09
VRK1-202ENST00000553683 PTGDRQ13258 359 aa8.24□□□□□ -1.09
VRK1-202ENST00000553683 ANKRD13DQ6ZTN6 518 aa8.24□□□□□ -1.09
VRK1-202ENST00000553683 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.24□□□□□ -1.09
VRK1-202ENST00000553683 RABGEF1Q9UJ41 708 aa8.24□□□□□ -1.09
VRK1-202ENST00000553683 TRIM6-TRIM34B2RNG4 842 aa8.23□□□□□ -1.09
VRK1-202ENST00000553683 FCHSD2O94868 740 aa8.23□□□□□ -1.09
VRK1-202ENST00000553683 PRSS12P56730 875 aa8.23□□□□□ -1.09
VRK1-202ENST00000553683 BHMG1C9JSJ3 638 aaPredicted RBP8.22□□□□□ -1.09
VRK1-202ENST00000553683 HIC1Q14526 733 aa8.22□□□□□ -1.09
VRK1-202ENST00000553683 TTC13Q8NBP0 860 aa8.22□□□□□ -1.09
VRK1-202ENST00000553683 NBPF3Q9H094 633 aa8.22□□□□□ -1.09
VRK1-202ENST00000553683 NUTM2FA1L443 756 aa8.21□□□□□ -1.1
VRK1-202ENST00000553683 RBM26Q5T8P6 1007 aaKnown RBP8.21□□□□□ -1.1
VRK1-202ENST00000553683 LAPTM4BQ86VI4 370 aa8.21□□□□□ -1.1
VRK1-202ENST00000553683 PACS2Q86VP3 889 aa8.21□□□□□ -1.1
VRK1-202ENST00000553683 SPNS2Q8IVW8 549 aa8.21□□□□□ -1.1
VRK1-202ENST00000553683 CDCA7LQ96GN5 454 aa8.21□□□□□ -1.1
VRK1-202ENST00000553683 CDHR5Q9HBB8 845 aa8.21□□□□□ -1.1
VRK1-202ENST00000553683 GPIHBP1Q8IV16 184 aa8.19□□□□□ -1.1
VRK1-202ENST00000553683 LMOD2Q6P5Q4 547 aa8.18□□□□□ -1.1
VRK1-202ENST00000553683 STAC3Q96MF2 364 aa8.18□□□□□ -1.1
VRK1-202ENST00000553683 GPR37O15354 613 aa8.17□□□□□ -1.1
VRK1-202ENST00000553683 PROX2Q3B8N5 592 aa8.17□□□□□ -1.1
VRK1-202ENST00000553683 KIAA1468Q9P260 1216 aa8.17□□□□□ -1.1
VRK1-202ENST00000553683 TSKSQ9UJT2 592 aa8.17□□□□□ -1.1
VRK1-202ENST00000553683 NBPF26B4DH59 902 aa8.16□□□□□ -1.1
VRK1-202ENST00000553683 GNPATO15228 680 aa8.16□□□□□ -1.1
VRK1-202ENST00000553683 MRPL50Q8N5N7 158 aaKnown RBP8.15□□□□□ -1.1
VRK1-202ENST00000553683 MYT1LQ9UL68 1186 aa8.15□□□□□ -1.1
VRK1-202ENST00000553683 FAM98CQ17RN3 349 aaKnown RBP8.14□□□□□ -1.11
VRK1-202ENST00000553683 PADI6Q6TGC4 694 aa8.14□□□□□ -1.11
VRK1-202ENST00000553683 TATDN2Q93075 761 aa8.13□□□□□ -1.11
VRK1-202ENST00000553683 FAM198AQ9UFP1 575 aa8.13□□□□□ -1.11
VRK1-202ENST00000553683 OATP04181 439 aa8.12□□□□□ -1.11
VRK1-202ENST00000553683 MMRN1Q13201 1228 aa8.12□□□□□ -1.11
VRK1-202ENST00000553683 RBM46Q8TBY0 533 aaKnown RBP8.1□□□□□ -1.11
VRK1-202ENST00000553683 EYA1Q99502 592 aa8.1□□□□□ -1.11
VRK1-202ENST00000553683 ADGRG1Q9Y653 693 aa8.1□□□□□ -1.11
VRK1-202ENST00000553683 MINK1Q8N4C8 1332 aaPredicted RBP8.09□□□□□ -1.11
VRK1-202ENST00000553683 GOLGA8CPA6NN73 597 aa8.09□□□□□ -1.11
VRK1-202ENST00000553683 ZMYND10O75800 440 aa8.09□□□□□ -1.11
VRK1-202ENST00000553683 MAP2K5Q13163 448 aa8.09□□□□□ -1.11
VRK1-202ENST00000553683 NUDT18Q6ZVK8 323 aa8.09□□□□□ -1.11
VRK1-202ENST00000553683 RNF166Q96A37 237 aaPredicted RBP8.09□□□□□ -1.11
VRK1-202ENST00000553683 ZFRQ96KR1 1074 aaKnown RBP8.09□□□□□ -1.11
VRK1-202ENST00000553683 PNMA3Q9UL41 463 aa8.09□□□□□ -1.11
VRK1-202ENST00000553683 BARGINQ6ZT62 677 aa8.08□□□□□ -1.12
VRK1-202ENST00000553683 ZC3H15Q8WU90 426 aaKnown RBP8.08□□□□□ -1.12
VRK1-202ENST00000553683 HDGFP51858 240 aaKnown RBP8.07□□□□□ -1.12
VRK1-202ENST00000553683 ANKK1Q8NFD2 765 aa8.07□□□□□ -1.12
VRK1-202ENST00000553683 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.06□□□□□ -1.12
VRK1-202ENST00000553683 PXYLP1Q8TE99 480 aa8.06□□□□□ -1.12
VRK1-202ENST00000553683 NECTIN2Q92692 538 aa8.06□□□□□ -1.12
VRK1-202ENST00000553683 WNT2BQ93097 391 aa8.06□□□□□ -1.12
VRK1-202ENST00000553683 SEPT9Q9UHD8 586 aaPredicted RBP8.06□□□□□ -1.12
VRK1-202ENST00000553683 IRF6O14896 467 aa8.05□□□□□ -1.12
VRK1-202ENST00000553683 FECHP22830 423 aa8.05□□□□□ -1.12
VRK1-202ENST00000553683 DNAJB2P25686 324 aa8.05□□□□□ -1.12
VRK1-202ENST00000553683 METTL3Q86U44 580 aaKnown RBP8.05□□□□□ -1.12
VRK1-202ENST00000553683 SOWAHBA6NEL2 793 aa8.04□□□□□ -1.12
VRK1-202ENST00000553683 C3orf80F5H4A9 247 aa8.04□□□□□ -1.12
VRK1-202ENST00000553683 THSD4Q6ZMP0 1018 aa8.04□□□□□ -1.12
VRK1-202ENST00000553683 NYAP1Q6ZVC0 841 aa8.04□□□□□ -1.12
VRK1-202ENST00000553683 HCSTQ9UBK5 93 aa8.04□□□□□ -1.12
VRK1-202ENST00000553683 SLC4A3P48751 1232 aa8.03□□□□□ -1.12
VRK1-202ENST00000553683 LRCH3Q96II8 777 aa8.03□□□□□ -1.12
VRK1-202ENST00000553683 TMEM134Q9H6X4 195 aa8.03□□□□□ -1.12
VRK1-202ENST00000553683 SMAPO00193 183 aa8.02□□□□□ -1.13
VRK1-202ENST00000553683 KCTD12Q96CX2 325 aaKnown RBP8.02□□□□□ -1.13
VRK1-202ENST00000553683 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.02□□□□□ -1.13
VRK1-202ENST00000553683 RCCD1A6NED2 376 aa8.01□□□□□ -1.13
VRK1-202ENST00000553683 SLF2Q8IX21 1173 aa8.01□□□□□ -1.13
VRK1-202ENST00000553683 KRI1Q8N9T8 703 aaKnown RBP8□□□□□ -1.13
VRK1-202ENST00000553683 PLSCR2Q9NRY7 297 aa8□□□□□ -1.13
VRK1-202ENST00000553683 TSR3Q9UJK0 312 aaKnown RBP8□□□□□ -1.13
VRK1-202ENST00000553683 SAMD7Q7Z3H4 446 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms