RNA–Protein interactions for RNA: ENST00000553612.5

GTF2A1-203, Transcript of general transcription factor IIA subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF2A1, Length 6,306 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF2A1-203ENST00000553612 TTLL5Q6EMB2 1281 aa11.22□□□□□ -0.61
GTF2A1-203ENST00000553612 KIF3AQ9Y496 699 aa11.22□□□□□ -0.61
GTF2A1-203ENST00000553612 LOC102724159A0A0B4J2E5 919 aa11.22□□□□□ -0.61
GTF2A1-203ENST00000553612 DMTNQ08495 405 aa11.22□□□□□ -0.61
GTF2A1-203ENST00000553612 PWP2Q15269 919 aaKnown RBP11.22□□□□□ -0.61
GTF2A1-203ENST00000553612 CCDC94Q9BW85 323 aaPredicted RBP11.22□□□□□ -0.61
GTF2A1-203ENST00000553612 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.22□□□□□ -0.61
GTF2A1-203ENST00000553612 PDCL2Q8N4E4 241 aa11.21□□□□□ -0.61
GTF2A1-203ENST00000553612 PRDM4Q9UKN5 801 aa11.21□□□□□ -0.61
GTF2A1-203ENST00000553612 SSR1P43307 286 aaKnown RBP11.21□□□□□ -0.61
GTF2A1-203ENST00000553612 NOM1Q5C9Z4 860 aaKnown RBP11.21□□□□□ -0.61
GTF2A1-203ENST00000553612 NGEFQ8N5V2 710 aa11.21□□□□□ -0.61
GTF2A1-203ENST00000553612 FOXD4L6Q3SYB3 417 aaPredicted RBP11.21□□□□□ -0.62
GTF2A1-203ENST00000553612 FOXD4L3Q6VB84 417 aaPredicted RBP11.21□□□□□ -0.62
GTF2A1-203ENST00000553612 EXOC6Q8TAG9 804 aa11.21□□□□□ -0.62
GTF2A1-203ENST00000553612 HMGB1P09429 215 aaKnown RBP11.21□□□□□ -0.62
GTF2A1-203ENST00000553612 KIF20AO95235 890 aa11.2□□□□□ -0.62
GTF2A1-203ENST00000553612 NASPP49321 788 aaPredicted RBP11.2□□□□□ -0.62
GTF2A1-203ENST00000553612 HSCBQ8IWL3 235 aa11.2□□□□□ -0.62
GTF2A1-203ENST00000553612 FAM177BA6PVY3 158 aa11.2□□□□□ -0.62
GTF2A1-203ENST00000553612 RALBP1Q15311 655 aa11.2□□□□□ -0.62
GTF2A1-203ENST00000553612 SKIDA1Q1XH10 827 aa11.2□□□□□ -0.62
GTF2A1-203ENST00000553612 ARID3CA6NKF2 412 aa11.2□□□□□ -0.62
GTF2A1-203ENST00000553612 EP400NLQ6ZTU2 488 aa11.2□□□□□ -0.62
GTF2A1-203ENST00000553612 CCER2I3L3R5 266 aa11.19□□□□□ -0.62
GTF2A1-203ENST00000553612 CALCOCO1Q9P1Z2 691 aa11.19□□□□□ -0.62
GTF2A1-203ENST00000553612 TRAK2O60296 914 aa11.19□□□□□ -0.62
GTF2A1-203ENST00000553612 TSPYL1Q9H0U9 437 aa11.19□□□□□ -0.62
GTF2A1-203ENST00000553612 XRCC6P12956 609 aaKnown RBP eCLIP11.18□□□□□ -0.62
GTF2A1-203ENST00000553612 TICAM2Q86XR7 235 aa11.18□□□□□ -0.62
GTF2A1-203ENST00000553612 GBP4Q96PP9 640 aa11.18□□□□□ -0.62
GTF2A1-203ENST00000553612 MFAP1P55081 439 aaKnown RBP11.18□□□□□ -0.62
GTF2A1-203ENST00000553612 FAM43BQ6ZT52 329 aaPredicted RBP11.17□□□□□ -0.62
GTF2A1-203ENST00000553612 TMEM51Q9NW97 253 aa11.17□□□□□ -0.62
GTF2A1-203ENST00000553612 DRC1Q96MC2 740 aa11.17□□□□□ -0.62
GTF2A1-203ENST00000553612 TEX35Q5T0J7 233 aa11.16□□□□□ -0.62
GTF2A1-203ENST00000553612 NEUROD2Q15784 382 aa11.15□□□□□ -0.62
GTF2A1-203ENST00000553612 NPHP1O15259 732 aa11.15□□□□□ -0.62
GTF2A1-203ENST00000553612 GTF2F1P35269 517 aaKnown RBP eCLIP11.15□□□□□ -0.62
GTF2A1-203ENST00000553612 RGS22Q8NE09 1264 aa11.15□□□□□ -0.62
GTF2A1-203ENST00000553612 KCNG1Q9UIX4 513 aa11.15□□□□□ -0.62
GTF2A1-203ENST00000553612 ZSCAN30Q86W11 494 aa11.15□□□□□ -0.62
GTF2A1-203ENST00000553612 MRVI1Q9Y6F6 885 aa11.15□□□□□ -0.62
GTF2A1-203ENST00000553612 FBXO3Q9UK99 471 aa11.15□□□□□ -0.63
GTF2A1-203ENST00000553612 DDX11L8A8MPP1 907 aa11.14□□□□□ -0.63
GTF2A1-203ENST00000553612 DDX49Q9Y6V7 483 aaKnown RBP11.14□□□□□ -0.63
GTF2A1-203ENST00000553612 CCDC173Q0VFZ6 552 aa11.13□□□□□ -0.63
GTF2A1-203ENST00000553612 SASS6Q6UVJ0 657 aa11.13□□□□□ -0.63
GTF2A1-203ENST00000553612 CHIC2Q9UKJ5 165 aa11.13□□□□□ -0.63
GTF2A1-203ENST00000553612 H0YHG0 523 aa11.13□□□□□ -0.63
GTF2A1-203ENST00000553612 DYNC1I1O14576 645 aa11.13□□□□□ -0.63
GTF2A1-203ENST00000553612 SARNPP82979 210 aaKnown RBP11.13□□□□□ -0.63
GTF2A1-203ENST00000553612 NBPF1Q3BBV0 1214 aa11.13□□□□□ -0.63
GTF2A1-203ENST00000553612 C10orf67Q8IYJ2 551 aa11.12□□□□□ -0.63
GTF2A1-203ENST00000553612 MYCBPQ99417 103 aaPredicted RBP11.12□□□□□ -0.63
GTF2A1-203ENST00000553612 CT47A1Q5JQC4 288 aaPredicted RBP11.11□□□□□ -0.63
GTF2A1-203ENST00000553612 KDM2AQ9Y2K7 1162 aa11.11□□□□□ -0.63
GTF2A1-203ENST00000553612 CWC15Q9P013 229 aaKnown RBP11.11□□□□□ -0.63
GTF2A1-203ENST00000553612 NOL8Q76FK4 1167 aaKnown RBP11.11□□□□□ -0.63
GTF2A1-203ENST00000553612 GIMAP7Q8NHV1 300 aa11.1□□□□□ -0.63
GTF2A1-203ENST00000553612 RSPH14Q9UHP6 348 aa11.1□□□□□ -0.63
GTF2A1-203ENST00000553612 RNF214Q8ND24 703 aa11.1□□□□□ -0.63
GTF2A1-203ENST00000553612 UTP14CQ5TAP6 766 aaKnown RBP11.09□□□□□ -0.63
GTF2A1-203ENST00000553612 LRCH2Q5VUJ6 765 aa11.09□□□□□ -0.63
GTF2A1-203ENST00000553612 IRX5P78411 483 aaPredicted RBP11.09□□□□□ -0.63
GTF2A1-203ENST00000553612 RCAN3Q9UKA8 241 aa11.09□□□□□ -0.63
GTF2A1-203ENST00000553612 EIF4G2P78344 907 aaKnown RBP eCLIP11.08□□□□□ -0.63
GTF2A1-203ENST00000553612 BACH2Q9BYV9 841 aa11.08□□□□□ -0.63
GTF2A1-203ENST00000553612 GPS2Q13227 327 aa11.08□□□□□ -0.64
GTF2A1-203ENST00000553612 RGL3Q3MIN7 710 aa11.08□□□□□ -0.64
GTF2A1-203ENST00000553612 TSC1Q92574 1164 aa11.08□□□□□ -0.64
GTF2A1-203ENST00000553612 FAM161AQ3B820 660 aa11.08□□□□□ -0.64
GTF2A1-203ENST00000553612 RDXP35241 583 aaKnown RBP11.08□□□□□ -0.64
GTF2A1-203ENST00000553612 ARMCX6Q7L4S7 300 aa11.07□□□□□ -0.64
GTF2A1-203ENST00000553612 ZNF513Q8N8E2 541 aaPredicted RBP11.07□□□□□ -0.64
GTF2A1-203ENST00000553612 PAIP2Q9BPZ3 127 aaKnown RBP11.07□□□□□ -0.64
GTF2A1-203ENST00000553612 CENPJQ9HC77 1338 aaPredicted RBP11.06□□□□□ -0.64
GTF2A1-203ENST00000553612 EEA1Q15075 1411 aa11.06□□□□□ -0.64
GTF2A1-203ENST00000553612 ANAPC15P60006 121 aa11.06□□□□□ -0.64
GTF2A1-203ENST00000553612 BIRC2Q13490 618 aa11.06□□□□□ -0.64
GTF2A1-203ENST00000553612 CCDC39Q9UFE4 941 aa11.06□□□□□ -0.64
GTF2A1-203ENST00000553612 NAP1L1P55209 391 aaKnown RBP11.05□□□□□ -0.64
GTF2A1-203ENST00000553612 PPP2R5AQ15172 486 aa11.05□□□□□ -0.64
GTF2A1-203ENST00000553612 FAM212AQ96EL1 285 aa11.05□□□□□ -0.64
GTF2A1-203ENST00000553612 HMGN5P82970 282 aaKnown RBP11.05□□□□□ -0.64
GTF2A1-203ENST00000553612 CWC22Q9HCG8 908 aaKnown RBP11.05□□□□□ -0.64
GTF2A1-203ENST00000553612 CALR3Q96L12 384 aaKnown RBP11.04□□□□□ -0.64
GTF2A1-203ENST00000553612 MCCP23508 829 aa11.04□□□□□ -0.64
GTF2A1-203ENST00000553612 U2AF2P26368 475 aaKnown RBP eCLIP11.04□□□□□ -0.64
GTF2A1-203ENST00000553612 CRBNQ96SW2 442 aa11.04□□□□□ -0.64
GTF2A1-203ENST00000553612 HTATSF1O43719 755 aaKnown RBP11.04□□□□□ -0.64
GTF2A1-203ENST00000553612 OFD1O75665 1012 aa11.04□□□□□ -0.64
GTF2A1-203ENST00000553612 PRPF38AQ8NAV1 312 aaKnown RBP11.04□□□□□ -0.64
GTF2A1-203ENST00000553612 RASSF4Q9H2L5 321 aa11.04□□□□□ -0.64
GTF2A1-203ENST00000553612 NUDCQ9Y266 331 aa11.03□□□□□ -0.64
GTF2A1-203ENST00000553612 POLR3GO15318 223 aaPredicted RBP11.03□□□□□ -0.64
GTF2A1-203ENST00000553612 PHF14O94880 888 aa11.03□□□□□ -0.64
GTF2A1-203ENST00000553612 DIAPH3Q9NSV4 1193 aa11.03□□□□□ -0.64
GTF2A1-203ENST00000553612 MS4A1P11836 297 aa11.03□□□□□ -0.64
GTF2A1-203ENST00000553612 MLECQ14165 292 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms