RNA–Protein interactions for RNA: ENST00000553055.1

PFKM-231, Transcript of phosphofructokinase, muscle, human

TSL 5

Gene PFKM, Length 289 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PFKM-231	ENST00000553055	EMILIN3	Q9NT22	766 aa		11.23	□□□□□ -0.61
PFKM-231	ENST00000553055	GRXCR2	A6NFK2	248 aa		11.22	□□□□□ -0.61
PFKM-231	ENST00000553055	BANK1	Q8NDB2	785 aa		11.22	□□□□□ -0.61
PFKM-231	ENST00000553055	CLCN1	P35523	988 aa		11.2	□□□□□ -0.62
PFKM-231	ENST00000553055	CCDC61	Q9Y6R9	512 aa		11.2	□□□□□ -0.62
PFKM-231	ENST00000553055	CSB-PGBD3	P0DP91	1061 aa		11.19	□□□□□ -0.62
PFKM-231	ENST00000553055	EIF4G1	Q04637	1599 aa	Known RBP	11.19	□□□□□ -0.62
PFKM-231	ENST00000553055	FECH	P22830	423 aa		11.18	□□□□□ -0.62
PFKM-231	ENST00000553055	IFNL1	Q8IU54	200 aa		11.18	□□□□□ -0.62
PFKM-231	ENST00000553055	PBXIP1	Q96AQ6	731 aa		11.18	□□□□□ -0.62
PFKM-231	ENST00000553055	GOLGA2	Q08379	1002 aa		11.16	□□□□□ -0.62
PFKM-231	ENST00000553055	SND1	Q7KZF4	910 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
PFKM-231	ENST00000553055	PRM3	Q9NNZ6	103 aa		11.16	□□□□□ -0.62
PFKM-231	ENST00000553055	PROCA1	Q8NCQ7	364 aa	Predicted RBP	11.14	□□□□□ -0.63
PFKM-231	ENST00000553055	GLMN	Q92990	594 aa		11.14	□□□□□ -0.63
PFKM-231	ENST00000553055	RBM42	Q9BTD8	480 aa	Known RBP	11.14	□□□□□ -0.63
PFKM-231	ENST00000553055	REPIN1	Q9BWE0	567 aa	Known RBP	11.14	□□□□□ -0.63
PFKM-231	ENST00000553055	GPCPD1	Q9NPB8	672 aa		11.14	□□□□□ -0.63
PFKM-231	ENST00000553055	IVNS1ABP	Q9Y6Y0	642 aa		11.12	□□□□□ -0.63
PFKM-231	ENST00000553055	OSBP	P22059	807 aa		11.11	□□□□□ -0.63
PFKM-231	ENST00000553055	TMEM259	Q4ZIN3	620 aa		11.11	□□□□□ -0.63
PFKM-231	ENST00000553055	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	11.11	□□□□□ -0.63
PFKM-231	ENST00000553055	SNRK	Q9NRH2	765 aa		11.11	□□□□□ -0.63
PFKM-231	ENST00000553055	POLR3E	Q9NVU0	708 aa		11.11	□□□□□ -0.63
PFKM-231	ENST00000553055	SSTR3	P32745	418 aa	Predicted RBP	11.1	□□□□□ -0.63
PFKM-231	ENST00000553055	RFC5	P40937	340 aa		11.09	□□□□□ -0.63
PFKM-231	ENST00000553055	DSG2	Q14126	1118 aa		11.09	□□□□□ -0.63
PFKM-231	ENST00000553055	BEGAIN	Q9BUH8	593 aa		11.09	□□□□□ -0.63
PFKM-231	ENST00000553055	TMUB1	Q9BVT8	246 aa		11.09	□□□□□ -0.63
PFKM-231	ENST00000553055	REM2	Q8IYK8	340 aa	Predicted RBP	11.08	□□□□□ -0.64
PFKM-231	ENST00000553055	GDPD2	Q9HCC8	539 aa		11.08	□□□□□ -0.64
PFKM-231	ENST00000553055	TBC1D12	O60347	775 aa		11.07	□□□□□ -0.64
PFKM-231	ENST00000553055	PAK3	O75914	559 aa	Predicted RBP	11.07	□□□□□ -0.64
PFKM-231	ENST00000553055	CLK2	P49760	499 aa	Known RBP	11.07	□□□□□ -0.64
PFKM-231	ENST00000553055	MAP3K9	P80192	1104 aa		11.07	□□□□□ -0.64
PFKM-231	ENST00000553055	PTGDR	Q13258	359 aa		11.07	□□□□□ -0.64
PFKM-231	ENST00000553055	MDM2	Q00987	491 aa	Predicted RBP	11.06	□□□□□ -0.64
PFKM-231	ENST00000553055	FAM177A1	Q8N128	213 aa	Predicted RBP	11.06	□□□□□ -0.64
PFKM-231	ENST00000553055	ABL2	P42684	1182 aa		11.05	□□□□□ -0.64
PFKM-231	ENST00000553055	CACNB1	Q02641	598 aa	Predicted RBP	11.05	□□□□□ -0.64
PFKM-231	ENST00000553055	SOCS7	O14512	581 aa		11.04	□□□□□ -0.64
PFKM-231	ENST00000553055	MAP3K13	O43283	966 aa		11.04	□□□□□ -0.64
PFKM-231	ENST00000553055	FOXK1	P85037	733 aa		11.04	□□□□□ -0.64
PFKM-231	ENST00000553055	MYSM1	Q5VVJ2	828 aa		11.04	□□□□□ -0.64
PFKM-231	ENST00000553055	TMC2	Q8TDI7	906 aa		11.04	□□□□□ -0.64
PFKM-231	ENST00000553055	DIXDC1	Q155Q3	683 aa		11.02	□□□□□ -0.65
PFKM-231	ENST00000553055	FARP1	Q9Y4F1	1045 aa	Predicted RBP	11.02	□□□□□ -0.65
PFKM-231	ENST00000553055	ERCC6	Q03468	1493 aa		11.01	□□□□□ -0.65
PFKM-231	ENST00000553055	MYO15B	Q96JP2	1530 aa		11.01	□□□□□ -0.65
PFKM-231	ENST00000553055	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	11.01	□□□□□ -0.65
PFKM-231	ENST00000553055	PTGER2	P43116	358 aa		11.01	□□□□□ -0.65
PFKM-231	ENST00000553055	RBM47	A0AV96	593 aa	Known RBP	11	□□□□□ -0.65
PFKM-231	ENST00000553055	POM121C	A8CG34	1229 aa		11	□□□□□ -0.65
PFKM-231	ENST00000553055	CANX	P27824	592 aa	Known RBP	11	□□□□□ -0.65
PFKM-231	ENST00000553055	MTMR14	Q8NCE2	650 aa		11	□□□□□ -0.65
PFKM-231	ENST00000553055	CHMP4A	Q9BY43	222 aa		11	□□□□□ -0.65
PFKM-231	ENST00000553055	RFX1	P22670	979 aa		10.99	□□□□□ -0.65
PFKM-231	ENST00000553055	B4GALNT3	Q6L9W6	998 aa		10.99	□□□□□ -0.65
PFKM-231	ENST00000553055	KIF12	Q96FN5	646 aa		10.99	□□□□□ -0.65
PFKM-231	ENST00000553055	FAM217B	Q9NTX9	383 aa	Predicted RBP	10.99	□□□□□ -0.65
PFKM-231	ENST00000553055	UNCX	A6NJT0	531 aa		10.98	□□□□□ -0.65
PFKM-231	ENST00000553055	VRTN	Q9H8Y1	702 aa		10.98	□□□□□ -0.65
PFKM-231	ENST00000553055	IGSF5	Q9NSI5	407 aa		10.98	□□□□□ -0.65
PFKM-231	ENST00000553055	PPP2R2D	Q66LE6	453 aa		10.97	□□□□□ -0.65
PFKM-231	ENST00000553055	CCDC125	Q86Z20	511 aa		10.97	□□□□□ -0.65
PFKM-231	ENST00000553055	DDX12P	Q92771	950 aa		10.97	□□□□□ -0.65
PFKM-231	ENST00000553055	PLPP6	Q8IY26	295 aa		10.96	□□□□□ -0.65
PFKM-231	ENST00000553055	ERCC3	P19447	782 aa		10.95	□□□□□ -0.66
PFKM-231	ENST00000553055	CFAP70	Q5T0N1	1121 aa		10.94	□□□□□ -0.66
PFKM-231	ENST00000553055	CHADL	Q6NUI6	762 aa		10.94	□□□□□ -0.66
PFKM-231	ENST00000553055	GNE	Q9Y223	722 aa	Known RBP	10.94	□□□□□ -0.66
PFKM-231	ENST00000553055	PITPNM1	O00562	1244 aa		10.93	□□□□□ -0.66
PFKM-231	ENST00000553055	HDGFL1	Q5TGJ6	251 aa		10.93	□□□□□ -0.66
PFKM-231	ENST00000553055	TBC1D2B	Q9UPU7	963 aa		10.93	□□□□□ -0.66
PFKM-231	ENST00000553055	TBC1D2	Q9BYX2	928 aa		10.92	□□□□□ -0.66
PFKM-231	ENST00000553055	SRPK2	P78362	688 aa	Known RBP	10.91	□□□□□ -0.66
PFKM-231	ENST00000553055	WASHC4	Q2M389	1173 aa		10.9	□□□□□ -0.66
PFKM-231	ENST00000553055	MRRF	Q96E11	262 aa	Known RBP	10.9	□□□□□ -0.66
PFKM-231	ENST00000553055	PPP1R12C	Q9BZL4	782 aa		10.9	□□□□□ -0.66
PFKM-231	ENST00000553055	PHOX2B	Q99453	314 aa		10.89	□□□□□ -0.67
PFKM-231	ENST00000553055	TMEM106C	Q9BVX2	250 aa		10.89	□□□□□ -0.67
PFKM-231	ENST00000553055	CARNS1	A5YM72	827 aa		10.88	□□□□□ -0.67
PFKM-231	ENST00000553055	PPM1G	O15355	546 aa	Predicted RBP	10.88	□□□□□ -0.67
PFKM-231	ENST00000553055	ATG7	O95352	703 aa		10.86	□□□□□ -0.67
PFKM-231	ENST00000553055	TUSC1	Q2TAM9	212 aa		10.86	□□□□□ -0.67
PFKM-231	ENST00000553055	CCER1	Q8TC90	406 aa	Predicted RBP	10.86	□□□□□ -0.67
PFKM-231	ENST00000553055	UPF1	Q92900	1129 aa	Known RBP eCLIP	10.86	□□□□□ -0.67
PFKM-231	ENST00000553055	NDUFB9	Q9Y6M9	179 aa		10.86	□□□□□ -0.67
PFKM-231	ENST00000553055	TMEM88B	A6NKF7	163 aa		10.85	□□□□□ -0.67
PFKM-231	ENST00000553055	OAT	P04181	439 aa		10.85	□□□□□ -0.67
PFKM-231	ENST00000553055	PRIM1	P49642	420 aa	Known RBP	10.85	□□□□□ -0.67
PFKM-231	ENST00000553055	DRC1	Q96MC2	740 aa		10.85	□□□□□ -0.67
PFKM-231	ENST00000553055	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	10.85	□□□□□ -0.67
PFKM-231	ENST00000553055	LIMD1	Q9UGP4	676 aa		10.85	□□□□□ -0.67
PFKM-231	ENST00000553055	RIC3	Q7Z5B4	369 aa		10.84	□□□□□ -0.67
PFKM-231	ENST00000553055	LMOD1	P29536	600 aa	Predicted RBP	10.83	□□□□□ -0.68
PFKM-231	ENST00000553055	ADAMTS19	Q8TE59	1207 aa		10.83	□□□□□ -0.68
PFKM-231	ENST00000553055	KIAA1522	Q9P206	1035 aa	Predicted RBP	10.83	□□□□□ -0.68
PFKM-231	ENST00000553055	PALM3	A6NDB9	673 aa	Predicted RBP	10.82	□□□□□ -0.68
PFKM-231	ENST00000553055	TCF3	P15923	654 aa		10.82	□□□□□ -0.68

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