RNA–Protein interactions for RNA: ENST00000553055.1

PFKM-231, Transcript of phosphofructokinase, muscle, human

TSL 5

Gene PFKM, Length 289 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PFKM-231	ENST00000553055	CHIC1	Q5VXU3	224 aa		20.66	■□□□□ 0.9
PFKM-231	ENST00000553055	AEBP2	Q6ZN18	517 aa	Predicted RBP	19.69	■□□□□ 0.74
PFKM-231	ENST00000553055	PHF23	Q9BUL5	403 aa	Predicted RBP	18.22	■□□□□ 0.51
PFKM-231	ENST00000553055	PLPPR3	Q6T4P5	718 aa		17.45	■□□□□ 0.38
PFKM-231	ENST00000553055	EHMT2	Q96KQ7	1210 aa		17.27	■□□□□ 0.36
PFKM-231	ENST00000553055	SLC24A1	O60721	1099 aa		16.65	■□□□□ 0.26
PFKM-231	ENST00000553055	KCNA4	P22459	653 aa		16.65	■□□□□ 0.26
PFKM-231	ENST00000553055	SENP3	Q9H4L4	574 aa	Predicted RBP	16.65	■□□□□ 0.26
PFKM-231	ENST00000553055	CSRNP3	Q8WYN3	585 aa		16.37	■□□□□ 0.21
PFKM-231	ENST00000553055	SLC4A1AP	Q9BWU0	796 aa	Known RBP	16.18	■□□□□ 0.18
PFKM-231	ENST00000553055	ADRA2B	P18089	450 aa		16.14	■□□□□ 0.17
PFKM-231	ENST00000553055	AMER1	Q5JTC6	1135 aa	Predicted RBP	15.96	■□□□□ 0.15
PFKM-231	ENST00000553055	RTN4	Q9NQC3	1192 aa	Known RBP	15.85	■□□□□ 0.13
PFKM-231	ENST00000553055	PPP6R1	Q9UPN7	881 aa		15.61	■□□□□ 0.09
PFKM-231	ENST00000553055	NCBP3	Q53F19	620 aa	Known RBP	15.59	■□□□□ 0.09
PFKM-231	ENST00000553055	PPP4R3CP	Q6ZMV5	832 aa		15.49	■□□□□ 0.07
PFKM-231	ENST00000553055	ZBTB22	O15209	634 aa		15.29	■□□□□ 0.04
PFKM-231	ENST00000553055	NPM3	O75607	178 aa	Known RBP	15.25	■□□□□ 0.03
PFKM-231	ENST00000553055	FOXD1	Q16676	465 aa		15.18	■□□□□ 0.02
PFKM-231	ENST00000553055	FOXD4L1	Q9NU39	408 aa		15.02	■□□□□ -0
PFKM-231	ENST00000553055	CNKSR2	Q8WXI2	1034 aa		14.8	□□□□□ -0.04
PFKM-231	ENST00000553055	FKBP8	Q14318	412 aa		14.78	□□□□□ -0.04
PFKM-231	ENST00000553055	PIAS4	Q8N2W9	510 aa	Predicted RBP	14.73	□□□□□ -0.05
PFKM-231	ENST00000553055	DNAJC5B	Q9UF47	199 aa		14.63	□□□□□ -0.07
PFKM-231	ENST00000553055	BCAN	Q96GW7	911 aa		14.6	□□□□□ -0.07
PFKM-231	ENST00000553055	PLCB2	Q00722	1185 aa		14.58	□□□□□ -0.08
PFKM-231	ENST00000553055	SCAF1	Q9H7N4	1312 aa	Known RBP	14.55	□□□□□ -0.08
PFKM-231	ENST00000553055	PRKCSH	P14314	528 aa	Predicted RBP	14.45	□□□□□ -0.1
PFKM-231	ENST00000553055	TAOK2	Q9UL54	1235 aa		14.43	□□□□□ -0.1
PFKM-231	ENST00000553055	HAP1	P54257	671 aa	Predicted RBP	14.4	□□□□□ -0.1
PFKM-231	ENST00000553055	ATXN8OS	P0DMR3	200 aa		14.39	□□□□□ -0.11
PFKM-231	ENST00000553055	DAXX	Q9UER7	740 aa	Predicted RBP	14.25	□□□□□ -0.13
PFKM-231	ENST00000553055	VSIG10	Q8N0Z9	540 aa		14.23	□□□□□ -0.13
PFKM-231	ENST00000553055	TPRN	Q4KMQ1	711 aa		14.18	□□□□□ -0.14
PFKM-231	ENST00000553055	RNF216	Q9NWF9	866 aa	Predicted RBP	14.16	□□□□□ -0.14
PFKM-231	ENST00000553055	MYCN	P04198	464 aa	Predicted RBP	14.13	□□□□□ -0.15
PFKM-231	ENST00000553055	ARX	Q96QS3	562 aa		14.06	□□□□□ -0.16
PFKM-231	ENST00000553055	DCAF8L2	P0C7V8	631 aa		14.05	□□□□□ -0.16
PFKM-231	ENST00000553055	SLC4A2	P04920	1241 aa		14.01	□□□□□ -0.17
PFKM-231	ENST00000553055	FBXO3	Q9UK99	471 aa		13.99	□□□□□ -0.17
PFKM-231	ENST00000553055	ERICH6	Q7L0X2	663 aa		13.93	□□□□□ -0.18
PFKM-231	ENST00000553055	TIMELESS	Q9UNS1	1208 aa		13.92	□□□□□ -0.18
PFKM-231	ENST00000553055	TULP1	O00294	542 aa	Predicted RBP	13.86	□□□□□ -0.19
PFKM-231	ENST00000553055	MAPK8IP2	Q13387	824 aa	Predicted RBP	13.82	□□□□□ -0.2
PFKM-231	ENST00000553055	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	13.82	□□□□□ -0.2
PFKM-231	ENST00000553055	KDM2A	Q9Y2K7	1162 aa		13.77	□□□□□ -0.21
PFKM-231	ENST00000553055	GTF3C3	Q9Y5Q9	886 aa		13.73	□□□□□ -0.21
PFKM-231	ENST00000553055	HOXD11	P31277	338 aa	Predicted RBP	13.71	□□□□□ -0.21
PFKM-231	ENST00000553055	HOMEZ	Q8IX15	550 aa		13.7	□□□□□ -0.22
PFKM-231	ENST00000553055	BBX	Q8WY36	941 aa	Predicted RBP	13.69	□□□□□ -0.22
PFKM-231	ENST00000553055	VASP	P50552	380 aa	Predicted RBP	13.67	□□□□□ -0.22
PFKM-231	ENST00000553055	FBLN2	P98095	1184 aa		13.67	□□□□□ -0.22
PFKM-231	ENST00000553055	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.62	□□□□□ -0.23
PFKM-231	ENST00000553055	PKD2	Q13563	968 aa		13.6	□□□□□ -0.23
PFKM-231	ENST00000553055	CFAP44	Q96MT7	982 aa		13.59	□□□□□ -0.23
PFKM-231	ENST00000553055	MSH5	O43196	834 aa		13.58	□□□□□ -0.24
PFKM-231	ENST00000553055	NBR1	Q14596	966 aa		13.58	□□□□□ -0.24
PFKM-231	ENST00000553055	IFNLR1	Q8IU57	520 aa	Predicted RBP	13.53	□□□□□ -0.24
PFKM-231	ENST00000553055	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.51	□□□□□ -0.25
PFKM-231	ENST00000553055	SPDYE4	A6NLX3	237 aa		13.48	□□□□□ -0.25
PFKM-231	ENST00000553055	DMRT2	Q9Y5R5	561 aa		13.46	□□□□□ -0.25
PFKM-231	ENST00000553055	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	13.45	□□□□□ -0.26
PFKM-231	ENST00000553055	HNRNPUL2	Q1KMD3	747 aa	Known RBP	13.45	□□□□□ -0.26
PFKM-231	ENST00000553055	TMEM132A	Q24JP5	1023 aa		13.44	□□□□□ -0.26
PFKM-231	ENST00000553055	SPRYD3	Q8NCJ5	442 aa		13.44	□□□□□ -0.26
PFKM-231	ENST00000553055	SAMD1	Q6SPF0	538 aa	Predicted RBP	13.43	□□□□□ -0.26
PFKM-231	ENST00000553055	PROM2	Q8N271	834 aa		13.4	□□□□□ -0.26
PFKM-231	ENST00000553055	C14orf37	Q86TY3	774 aa		13.39	□□□□□ -0.27
PFKM-231	ENST00000553055	TSHZ2	Q9NRE2	1034 aa		13.38	□□□□□ -0.27
PFKM-231	ENST00000553055	NPM1	P06748	294 aa	Known RBP eCLIP	13.36	□□□□□ -0.27
PFKM-231	ENST00000553055	ECM2	O94769	699 aa	Predicted RBP	13.35	□□□□□ -0.27
PFKM-231	ENST00000553055	RANGAP1	P46060	587 aa	Predicted RBP	13.35	□□□□□ -0.27
PFKM-231	ENST00000553055	DNAJC5	Q9H3Z4	198 aa		13.26	□□□□□ -0.29
PFKM-231	ENST00000553055	SPOCK2	Q92563	424 aa		13.23	□□□□□ -0.29
PFKM-231	ENST00000553055	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.22	□□□□□ -0.29
PFKM-231	ENST00000553055	KLHL34	Q8N239	644 aa		13.17	□□□□□ -0.3
PFKM-231	ENST00000553055	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	13.13	□□□□□ -0.31
PFKM-231	ENST00000553055	RGL2	O15211	777 aa		13.11	□□□□□ -0.31
PFKM-231	ENST00000553055	PODXL2	Q9NZ53	605 aa		13.1	□□□□□ -0.31
PFKM-231	ENST00000553055	CHGA	P10645	457 aa	Known RBP	13.06	□□□□□ -0.32
PFKM-231	ENST00000553055	APLP2	Q06481	763 aa		13.03	□□□□□ -0.32
PFKM-231	ENST00000553055	MKRN4P	Q13434	485 aa	Predicted RBP	13.01	□□□□□ -0.33
PFKM-231	ENST00000553055		U3KPZ7	1027 aa	Predicted RBP	13	□□□□□ -0.33
PFKM-231	ENST00000553055	SUPT5H	O00267	1087 aa	Known RBP	12.9	□□□□□ -0.34
PFKM-231	ENST00000553055	HS6ST3	Q8IZP7	471 aa		12.87	□□□□□ -0.35
PFKM-231	ENST00000553055	DCAF8L1	A6NGE4	600 aa		12.86	□□□□□ -0.35
PFKM-231	ENST00000553055	PLCD3	Q8N3E9	789 aa		12.82	□□□□□ -0.36
PFKM-231	ENST00000553055	STAG3	Q9UJ98	1225 aa		12.82	□□□□□ -0.36
PFKM-231	ENST00000553055	NISCH	Q9Y2I1	1504 aa		12.82	□□□□□ -0.36
PFKM-231	ENST00000553055	TRIM41	Q8WV44	630 aa		12.8	□□□□□ -0.36
PFKM-231	ENST00000553055	CIZ1	Q9ULV3	898 aa	Predicted RBP	12.79	□□□□□ -0.36
PFKM-231	ENST00000553055	P3H3	Q8IVL6	736 aa		12.76	□□□□□ -0.37
PFKM-231	ENST00000553055	NPM2	Q86SE8	214 aa	Known RBP	12.75	□□□□□ -0.37
PFKM-231	ENST00000553055	BRPF1	P55201	1214 aa	Predicted RBP	12.72	□□□□□ -0.37
PFKM-231	ENST00000553055	ABCC9	O60706	1549 aa		12.71	□□□□□ -0.38
PFKM-231	ENST00000553055	LMOD2	Q6P5Q4	547 aa		12.68	□□□□□ -0.38
PFKM-231	ENST00000553055	ZBTB47	Q9UFB7	747 aa	Predicted RBP	12.66	□□□□□ -0.38
PFKM-231	ENST00000553055	UBTF	P17480	764 aa	Known RBP	12.65	□□□□□ -0.38
PFKM-231	ENST00000553055	MIER1	Q8N108	512 aa		12.64	□□□□□ -0.39
PFKM-231	ENST00000553055	TRIM26	Q12899	539 aa	Predicted RBP	12.63	□□□□□ -0.39

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