RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 TROQ12816 1431 aaPredicted RBP20.93■□□□□ 0.94
CUX1-213ENST00000549414 URB2Q14146 1524 aaKnown RBP20.93■□□□□ 0.94
CUX1-213ENST00000549414 EXOC6Q8TAG9 804 aa20.92■□□□□ 0.94
CUX1-213ENST00000549414 MIA2Q96PC5 1412 aa20.92■□□□□ 0.94
CUX1-213ENST00000549414 BIVM-ERCC5R4GMW8 1640 aa20.92■□□□□ 0.94
CUX1-213ENST00000549414 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.91■□□□□ 0.943e-6■□□□□ 10.3
CUX1-213ENST00000549414 EIF5BO60841 1220 aaKnown RBP20.91■□□□□ 0.94
CUX1-213ENST00000549414 HDGFP51858 240 aaKnown RBP20.9■□□□□ 0.94
CUX1-213ENST00000549414 PDE3BQ13370 1112 aa20.9■□□□□ 0.94
CUX1-213ENST00000549414 SYNJ2O15056 1496 aa20.89■□□□□ 0.93
CUX1-213ENST00000549414 APAF1O14727 1248 aa20.89■□□□□ 0.93
CUX1-213ENST00000549414 BCL2L13Q9BXK5 485 aa20.89■□□□□ 0.93
CUX1-213ENST00000549414 DAPK1P53355 1430 aa20.89■□□□□ 0.93
CUX1-213ENST00000549414 PNNQ9H307 717 aaKnown RBP20.88■□□□□ 0.93
CUX1-213ENST00000549414 C9orf84Q5VXU9 1444 aa20.88■□□□□ 0.93
CUX1-213ENST00000549414 ANP32BQ92688 251 aaKnown RBP20.88■□□□□ 0.93
CUX1-213ENST00000549414 ARHGAP5Q13017 1502 aa20.87■□□□□ 0.93
CUX1-213ENST00000549414 PAK3O75914 559 aaPredicted RBP20.86■□□□□ 0.93
CUX1-213ENST00000549414 TERF2IPQ9NYB0 399 aa20.86■□□□□ 0.93
CUX1-213ENST00000549414 MINK1Q8N4C8 1332 aaPredicted RBP20.86■□□□□ 0.93
CUX1-213ENST00000549414 HECW1Q76N89 1606 aa20.86■□□□□ 0.93
CUX1-213ENST00000549414 MS4A1P11836 297 aa20.86■□□□□ 0.93
CUX1-213ENST00000549414 KIAA0586Q9BVV6 1533 aa20.85■□□□□ 0.93
CUX1-213ENST00000549414 LAMC3Q9Y6N6 1575 aa20.85■□□□□ 0.93
CUX1-213ENST00000549414 TMEM132EQ6IEE7 984 aa20.85■□□□□ 0.93
CUX1-213ENST00000549414 PLB1Q6P1J6 1458 aa20.85■□□□□ 0.93
CUX1-213ENST00000549414 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.85■□□□□ 0.938e-6■□□□□ 8.4
CUX1-213ENST00000549414 SUPT6HQ7KZ85 1726 aaKnown RBP20.84■□□□□ 0.93
CUX1-213ENST00000549414 RRP1P56182 461 aaKnown RBP20.84■□□□□ 0.93
CUX1-213ENST00000549414 SPRYD3Q8NCJ5 442 aa20.84■□□□□ 0.93
CUX1-213ENST00000549414 KIAA1107Q9UPP5 1409 aa20.84■□□□□ 0.93
CUX1-213ENST00000549414 APBB1O00213 710 aa20.84■□□□□ 0.93
CUX1-213ENST00000549414 TCERG1O14776 1098 aaKnown RBP20.84■□□□□ 0.93
CUX1-213ENST00000549414 CFAP70Q5T0N1 1121 aa20.83■□□□□ 0.93
CUX1-213ENST00000549414 ITPRIPQ8IWB1 547 aa20.83■□□□□ 0.93
CUX1-213ENST00000549414 IQGAP2Q13576 1575 aa20.83■□□□□ 0.93
CUX1-213ENST00000549414 C11orf95C9JLR9 678 aaPredicted RBP20.83■□□□□ 0.93
CUX1-213ENST00000549414 ZNF608Q9ULD9 1512 aaPredicted RBP20.83■□□□□ 0.92
CUX1-213ENST00000549414 SMC4Q9NTJ3 1288 aa20.82■□□□□ 0.92
CUX1-213ENST00000549414 CENPJQ9HC77 1338 aaPredicted RBP20.81■□□□□ 0.92
CUX1-213ENST00000549414 VGFO15240 615 aaPredicted RBP20.81■□□□□ 0.92
CUX1-213ENST00000549414 CRBNQ96SW2 442 aa20.81■□□□□ 0.92
CUX1-213ENST00000549414 CDCA7LQ96GN5 454 aa20.78■□□□□ 0.92
CUX1-213ENST00000549414 TPRNQ4KMQ1 711 aa20.77■□□□□ 0.92
CUX1-213ENST00000549414 FAM69CQ0P6D2 419 aa20.77■□□□□ 0.92
CUX1-213ENST00000549414 CUL7Q14999 1698 aa20.77■□□□□ 0.91
CUX1-213ENST00000549414 ELL2O00472 640 aaPredicted RBP20.76■□□□□ 0.91
CUX1-213ENST00000549414 ARHGEF11O15085 1522 aa20.76■□□□□ 0.91
CUX1-213ENST00000549414 MAP3K1Q13233 1512 aa20.75■□□□□ 0.91
CUX1-213ENST00000549414 ADAMTS8Q9UP79 889 aa20.74■□□□□ 0.91
CUX1-213ENST00000549414 EVC2Q86UK5 1308 aa20.74■□□□□ 0.91
CUX1-213ENST00000549414 ABCC5O15440 1437 aa20.74■□□□□ 0.91
CUX1-213ENST00000549414 NCLP19338 710 aaKnown RBP20.74■□□□□ 0.91
CUX1-213ENST00000549414 RTF1Q92541 710 aaKnown RBP20.74■□□□□ 0.91
CUX1-213ENST00000549414 RTN4Q9NQC3 1192 aaKnown RBP20.74■□□□□ 0.91
CUX1-213ENST00000549414 CGNL1Q0VF96 1302 aa20.74■□□□□ 0.91
CUX1-213ENST00000549414 IPO8O15397 1037 aaKnown RBP20.74■□□□□ 0.91
CUX1-213ENST00000549414 PTPRKQ15262 1439 aa20.73■□□□□ 0.91
CUX1-213ENST00000549414 PTPN23Q9H3S7 1636 aa20.73■□□□□ 0.91
CUX1-213ENST00000549414 COG6Q9Y2V7 657 aa20.72■□□□□ 0.91
CUX1-213ENST00000549414 RWDD1Q9H446 243 aaPredicted RBP20.72■□□□□ 0.91
CUX1-213ENST00000549414 SLKQ9H2G2 1235 aaPredicted RBP20.71■□□□□ 0.91
CUX1-213ENST00000549414 CHMP4BQ9H444 224 aaKnown RBP20.71■□□□□ 0.91
CUX1-213ENST00000549414 ANKRD30BQ9BXX2 1392 aa20.71■□□□□ 0.91
CUX1-213ENST00000549414 SCAPERQ9BY12 1400 aa20.71■□□□□ 0.91
CUX1-213ENST00000549414 DEKP35659 375 aaKnown RBP20.71■□□□□ 0.91
CUX1-213ENST00000549414 IPO9Q96P70 1041 aaKnown RBP20.7■□□□□ 0.9
CUX1-213ENST00000549414 GRIN2AQ12879 1464 aa20.7■□□□□ 0.9
CUX1-213ENST00000549414 CASC1Q6TDU7 716 aa20.69■□□□□ 0.9
CUX1-213ENST00000549414 HSP90AB1P08238 724 aaKnown RBP20.69■□□□□ 0.9
CUX1-213ENST00000549414 NGDNQ8NEJ9 315 aaKnown RBP20.68■□□□□ 0.9
CUX1-213ENST00000549414 CABP2Q9NPB3 220 aa20.68■□□□□ 0.9
CUX1-213ENST00000549414 PDE4AP27815 886 aa20.68■□□□□ 0.9
CUX1-213ENST00000549414 LTV1Q96GA3 475 aaPredicted RBP20.68■□□□□ 0.9
CUX1-213ENST00000549414 OS9Q13438 667 aaPredicted RBP20.67■□□□□ 0.9
CUX1-213ENST00000549414 GGNBP2Q9H3C7 697 aa20.67■□□□□ 0.9
CUX1-213ENST00000549414 EID1Q9Y6B2 187 aa20.67■□□□□ 0.9
CUX1-213ENST00000549414 ROCK1Q13464 1354 aa20.67■□□□□ 0.9
CUX1-213ENST00000549414 E9PSI1 815 aa20.67■□□□□ 0.9
CUX1-213ENST00000549414 PNISRQ8TF01 805 aaKnown RBP20.67■□□□□ 0.9
CUX1-213ENST00000549414 NPHP1O15259 732 aa20.66■□□□□ 0.9
CUX1-213ENST00000549414 SLC4A3P48751 1232 aa20.66■□□□□ 0.9
CUX1-213ENST00000549414 CAMSAP2Q08AD1 1489 aa20.66■□□□□ 0.9
CUX1-213ENST00000549414 BRD4O60885 1362 aaPredicted RBP20.65■□□□□ 0.9
CUX1-213ENST00000549414 GOLGA6L22H0YM25 854 aa20.65■□□□□ 0.9
CUX1-213ENST00000549414 AKNAQ7Z591 1439 aa20.64■□□□□ 0.9
CUX1-213ENST00000549414 RAPGEF3O95398 923 aa20.64■□□□□ 0.89
CUX1-213ENST00000549414 MAGI1Q96QZ7 1491 aaPredicted RBP20.64■□□□□ 0.89
CUX1-213ENST00000549414 CSB-PGBD3P0DP91 1061 aa20.63■□□□□ 0.89
CUX1-213ENST00000549414 PPP2R1AP30153 589 aa20.63■□□□□ 0.89
CUX1-213ENST00000549414 MFAP1P55081 439 aaKnown RBP20.63■□□□□ 0.89
CUX1-213ENST00000549414 PMFBP1Q8TBY8 1022 aa20.63■□□□□ 0.89
CUX1-213ENST00000549414 CALD1Q05682 793 aaKnown RBP20.63■□□□□ 0.89
CUX1-213ENST00000549414 NCOA1Q15788 1441 aa20.62■□□□□ 0.89
CUX1-213ENST00000549414 SLC12A5Q9H2X9 1139 aa20.62■□□□□ 0.89
CUX1-213ENST00000549414 THOC2Q8NI27 1593 aaKnown RBP20.62■□□□□ 0.89
CUX1-213ENST00000549414 HSCBQ8IWL3 235 aa20.62■□□□□ 0.89
CUX1-213ENST00000549414 MAPKBP1O60336 1514 aa20.61■□□□□ 0.89
CUX1-213ENST00000549414 SLC4A10Q6U841 1118 aa20.61■□□□□ 0.89
CUX1-213ENST00000549414 MTHFSP49914 203 aa20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms