RNA–Protein interactions for RNA: ENST00000548860.5

CACNB3-209, Transcript of calcium voltage-gated channel auxiliary subunit beta 3, humanhuman

TSL 2

Gene CACNB3, Length 4,029 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNB3-209ENST00000548860 STAG3Q9UJ98 1225 aa18.52■□□□□ 0.55
CACNB3-209ENST00000548860 U2SURPO15042 1029 aaKnown RBP18.51■□□□□ 0.55
CACNB3-209ENST00000548860 SUPT6HQ7KZ85 1726 aaKnown RBP18.5■□□□□ 0.55
CACNB3-209ENST00000548860 C20orf194Q5TEA3 1177 aa18.49■□□□□ 0.55
CACNB3-209ENST00000548860 PTPRGP23470 1445 aa18.49■□□□□ 0.55
CACNB3-209ENST00000548860 NCOA1Q15788 1441 aa18.47■□□□□ 0.55
CACNB3-209ENST00000548860 NPM1P06748 294 aaKnown RBP eCLIP18.47■□□□□ 0.55
CACNB3-209ENST00000548860 KDM6BO15054 1643 aa18.47■□□□□ 0.55
CACNB3-209ENST00000548860 SLKQ9H2G2 1235 aaPredicted RBP18.46■□□□□ 0.55
CACNB3-209ENST00000548860 ABCA5Q8WWZ7 1642 aa18.45■□□□□ 0.54
CACNB3-209ENST00000548860 LRRIQ1Q96JM4 1722 aa18.45■□□□□ 0.54
CACNB3-209ENST00000548860 KIAA1107Q9UPP5 1409 aa18.44■□□□□ 0.54
CACNB3-209ENST00000548860 EFCAB2Q5VUJ9 269 aa18.44■□□□□ 0.54
CACNB3-209ENST00000548860 MORC1Q86VD1 984 aa18.44■□□□□ 0.54
CACNB3-209ENST00000548860 GOLGA2Q08379 1002 aa18.43■□□□□ 0.54
CACNB3-209ENST00000548860 IQGAP2Q13576 1575 aa18.42■□□□□ 0.54
CACNB3-209ENST00000548860 MIA2Q96PC5 1412 aa18.42■□□□□ 0.54
CACNB3-209ENST00000548860 ARHGEF11O15085 1522 aa18.42■□□□□ 0.54
CACNB3-209ENST00000548860 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.42■□□□□ 0.54
CACNB3-209ENST00000548860 TMEM132EQ6IEE7 984 aa18.42■□□□□ 0.54
CACNB3-209ENST00000548860 COG6Q9Y2V7 657 aa18.42■□□□□ 0.54
CACNB3-209ENST00000548860 SPAG9O60271 1321 aaKnown RBP18.41■□□□□ 0.54
CACNB3-209ENST00000548860 TCERG1O14776 1098 aaKnown RBP18.41■□□□□ 0.54
CACNB3-209ENST00000548860 CFAP70Q5T0N1 1121 aa18.41■□□□□ 0.54
CACNB3-209ENST00000548860 SOX12O15370 315 aa18.41■□□□□ 0.54
CACNB3-209ENST00000548860 MRC2Q9UBG0 1479 aa18.4■□□□□ 0.54
CACNB3-209ENST00000548860 TROQ12816 1431 aaPredicted RBP18.39■□□□□ 0.54
CACNB3-209ENST00000548860 UGGT2Q9NYU1 1516 aa18.39■□□□□ 0.54
CACNB3-209ENST00000548860 C9orf84Q5VXU9 1444 aa18.39■□□□□ 0.53
CACNB3-209ENST00000548860 RPRD2Q5VT52 1461 aaKnown RBP18.39■□□□□ 0.53
CACNB3-209ENST00000548860 MLECQ14165 292 aa18.39■□□□□ 0.53
CACNB3-209ENST00000548860 U2AF1L5P0DN76 240 aaPredicted RBP18.39■□□□□ 0.53
CACNB3-209ENST00000548860 U2AF1Q01081 240 aaKnown RBP eCLIP18.39■□□□□ 0.53
CACNB3-209ENST00000548860 SAMD9Q5K651 1589 aa18.38■□□□□ 0.53
CACNB3-209ENST00000548860 BCAR3O75815 825 aa18.38■□□□□ 0.53
CACNB3-209ENST00000548860 CDCA8Q53HL2 280 aa18.38■□□□□ 0.53
CACNB3-209ENST00000548860 TARBP1Q13395 1621 aaKnown RBP18.36■□□□□ 0.53
CACNB3-209ENST00000548860 SRPK2P78362 688 aaKnown RBP18.36■□□□□ 0.53
CACNB3-209ENST00000548860 FTSJ3Q8IY81 847 aaKnown RBP18.36■□□□□ 0.53
CACNB3-209ENST00000548860 PANK1Q8TE04 598 aa18.35■□□□□ 0.53
CACNB3-209ENST00000548860 HECW1Q76N89 1606 aa18.35■□□□□ 0.53
CACNB3-209ENST00000548860 UPF2Q9HAU5 1272 aaKnown RBP18.35■□□□□ 0.53
CACNB3-209ENST00000548860 CAMSAP2Q08AD1 1489 aa18.34■□□□□ 0.53
CACNB3-209ENST00000548860 HSP90AA1P07900 732 aaKnown RBP18.33■□□□□ 0.53
CACNB3-209ENST00000548860 DENND4BO75064 1496 aaPredicted RBP18.32■□□□□ 0.52
CACNB3-209ENST00000548860 DDRGK1Q96HY6 314 aa18.32■□□□□ 0.52
CACNB3-209ENST00000548860 PPP2R1AP30153 589 aa18.32■□□□□ 0.52
CACNB3-209ENST00000548860 IL27Q8NEV9 243 aa18.32■□□□□ 0.52
CACNB3-209ENST00000548860 GZF1Q9H116 711 aaPredicted RBP18.32■□□□□ 0.52
CACNB3-209ENST00000548860 SMG6Q86US8 1419 aaKnown RBP18.32■□□□□ 0.52
CACNB3-209ENST00000548860 ELL2O00472 640 aaPredicted RBP18.31■□□□□ 0.52
CACNB3-209ENST00000548860 NUP153P49790 1475 aaKnown RBP18.3■□□□□ 0.52
CACNB3-209ENST00000548860 POGKQ9P215 609 aa18.3■□□□□ 0.52
CACNB3-209ENST00000548860 PDE3BQ13370 1112 aa18.3■□□□□ 0.52
CACNB3-209ENST00000548860 BRD4O60885 1362 aaPredicted RBP18.29■□□□□ 0.52
CACNB3-209ENST00000548860 NUTM2FA1L443 756 aa18.28■□□□□ 0.52
CACNB3-209ENST00000548860 SLC12A5Q9H2X9 1139 aa18.28■□□□□ 0.52
CACNB3-209ENST00000548860 KIAA0586Q9BVV6 1533 aa18.28■□□□□ 0.52
CACNB3-209ENST00000548860 TPRNQ4KMQ1 711 aa18.28■□□□□ 0.52
CACNB3-209ENST00000548860 CFAP53Q96M91 514 aa18.27■□□□□ 0.52
CACNB3-209ENST00000548860 ROCK1Q13464 1354 aa18.27■□□□□ 0.52
CACNB3-209ENST00000548860 PBRM1Q86U86 1689 aa18.27■□□□□ 0.52
CACNB3-209ENST00000548860 APBB1O00213 710 aa18.27■□□□□ 0.52
CACNB3-209ENST00000548860 ADAMTS12P58397 1594 aa18.27■□□□□ 0.52
CACNB3-209ENST00000548860 DISP3Q9P2K9 1392 aa18.27■□□□□ 0.51
CACNB3-209ENST00000548860 DISP1Q96F81 1524 aa18.26■□□□□ 0.51
CACNB3-209ENST00000548860 GPATCH8Q9UKJ3 1502 aaKnown RBP18.26■□□□□ 0.51
CACNB3-209ENST00000548860 DHX29Q7Z478 1369 aaKnown RBP18.26■□□□□ 0.51
CACNB3-209ENST00000548860 GRIN2AQ12879 1464 aa18.26■□□□□ 0.51
CACNB3-209ENST00000548860 WDR62O43379 1518 aa18.26■□□□□ 0.51
CACNB3-209ENST00000548860 IFT140Q96RY7 1462 aa18.25■□□□□ 0.51
CACNB3-209ENST00000548860 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.24■□□□□ 0.51
CACNB3-209ENST00000548860 BACH2Q9BYV9 841 aa18.24■□□□□ 0.51
CACNB3-209ENST00000548860 CENPJQ9HC77 1338 aaPredicted RBP18.23■□□□□ 0.51
CACNB3-209ENST00000548860 FOXD4L1Q9NU39 408 aa18.23■□□□□ 0.51
CACNB3-209ENST00000548860 RSPH4AQ5TD94 716 aa18.22■□□□□ 0.51
CACNB3-209ENST00000548860 MAPK8IP3Q9UPT6 1336 aa18.22■□□□□ 0.51
CACNB3-209ENST00000548860 ITPRIPQ8IWB1 547 aa18.21■□□□□ 0.51
CACNB3-209ENST00000548860 ARHGAP5Q13017 1502 aa18.21■□□□□ 0.51
CACNB3-209ENST00000548860 MFAP1P55081 439 aaKnown RBP18.21■□□□□ 0.51
CACNB3-209ENST00000548860 KDM5BQ9UGL1 1544 aa18.2■□□□□ 0.5
CACNB3-209ENST00000548860 KANK1Q14678 1352 aa18.2■□□□□ 0.5
CACNB3-209ENST00000548860 CABP2Q9NPB3 220 aa18.2■□□□□ 0.5
CACNB3-209ENST00000548860 MINK1Q8N4C8 1332 aaPredicted RBP18.19■□□□□ 0.5
CACNB3-209ENST00000548860 WASHC2CQ9Y4E1 1318 aa18.19■□□□□ 0.5
CACNB3-209ENST00000548860 GGNBP2Q9H3C7 697 aa18.19■□□□□ 0.5
CACNB3-209ENST00000548860 ZBTB7CA1YPR0 619 aa18.19■□□□□ 0.5
CACNB3-209ENST00000548860 PZPP20742 1482 aa18.18■□□□□ 0.5
CACNB3-209ENST00000548860 TCOF1Q13428 1488 aaKnown RBP18.18■□□□□ 0.5
CACNB3-209ENST00000548860 SMC4Q9NTJ3 1288 aa18.18■□□□□ 0.5
CACNB3-209ENST00000548860 BRPF3Q9ULD4 1205 aa18.18■□□□□ 0.5
CACNB3-209ENST00000548860 MTHFSP49914 203 aa18.18■□□□□ 0.5
CACNB3-209ENST00000548860 FAM161AQ3B820 660 aa18.18■□□□□ 0.5
CACNB3-209ENST00000548860 CENPQQ7L2Z9 268 aaPredicted RBP18.17■□□□□ 0.5
CACNB3-209ENST00000548860 PLEKHH2Q8IVE3 1493 aa18.17■□□□□ 0.5
CACNB3-209ENST00000548860 ARID4BQ4LE39 1312 aaPredicted RBP18.17■□□□□ 0.5
CACNB3-209ENST00000548860 TSR2Q969E8 191 aaKnown RBP18.16■□□□□ 0.5
CACNB3-209ENST00000548860 MAGI1Q96QZ7 1491 aaPredicted RBP18.16■□□□□ 0.5
CACNB3-209ENST00000548860 KIAA0556O60303 1618 aa18.16■□□□□ 0.5
CACNB3-209ENST00000548860 FRAT2O75474 233 aaPredicted RBP18.16■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms